Wall clock time and date at job start Tue Mar 31 2020 15:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.09002 * 110.43101 * 2 1 4 4 C 1.54889 * 110.48641 * 122.54067 * 2 1 3 5 5 C 1.54886 * 102.74835 * 156.62061 * 4 2 1 6 6 C 1.54264 * 104.19549 * 322.06029 * 5 4 2 7 7 C 1.53006 * 110.03114 * 142.94315 * 6 5 4 8 8 C 1.50695 * 110.03126 * 264.32304 * 6 5 4 9 9 O 1.21286 * 119.99921 * 7.08222 * 8 6 5 10 10 N 1.34776 * 120.00255 * 187.08432 * 8 6 5 11 11 C 1.46500 * 120.00051 * 180.02562 * 10 8 6 12 12 C 1.53048 * 109.45930 * 204.99613 * 11 10 8 13 13 C 1.53190 * 109.31370 * 178.61679 * 12 11 10 14 14 N 1.46923 * 108.77755 * 54.63365 * 13 12 11 15 15 C 1.36938 * 120.62697 * 126.36931 * 14 13 12 16 16 H 1.07998 * 120.00306 * 328.52888 * 15 14 13 17 17 C 1.38810 * 119.99677 * 148.53508 * 15 14 13 18 18 N 1.31622 * 120.00060 * 335.66565 * 17 15 14 19 19 Si 1.86802 * 120.00209 * 155.67153 * 17 15 14 20 20 H 1.48499 * 109.46650 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47415 * 239.99543 * 19 17 15 22 22 H 1.48507 * 109.47235 * 119.99342 * 19 17 15 23 23 C 1.46928 * 118.74107 * 306.64815 * 14 13 12 24 24 C 1.52763 * 109.00684 * 53.30395 * 23 14 13 25 25 C 1.53875 * 106.60089 * 23.60833 * 6 5 4 26 26 C 1.52999 * 110.03243 * 119.28399 * 25 6 5 27 27 C 1.53002 * 110.03233 * 240.71777 * 25 6 5 28 28 H 1.08999 * 109.46950 * 298.91071 * 1 2 3 29 29 H 1.08998 * 109.46407 * 58.91258 * 1 2 3 30 30 H 1.08995 * 109.46795 * 178.91247 * 1 2 3 31 31 H 1.09004 * 110.75514 * 38.30394 * 4 2 1 32 32 H 1.09005 * 110.75904 * 274.94212 * 4 2 1 33 33 H 1.08996 * 110.48478 * 203.37528 * 5 4 2 34 34 H 1.08998 * 110.48375 * 80.74030 * 5 4 2 35 35 H 1.08998 * 109.46704 * 182.09027 * 7 6 5 36 36 H 1.09000 * 109.46752 * 302.09123 * 7 6 5 37 37 H 1.09000 * 109.46774 * 62.09013 * 7 6 5 38 38 H 0.97002 * 119.99836 * 359.97438 * 10 8 6 39 39 H 1.08997 * 109.45410 * 324.96051 * 11 10 8 40 40 H 1.08997 * 109.49457 * 58.66222 * 12 11 10 41 41 H 1.09001 * 109.49601 * 298.56926 * 12 11 10 42 42 H 1.09005 * 109.58502 * 294.84819 * 13 12 11 43 43 H 1.08997 * 109.58490 * 174.42805 * 13 12 11 44 44 H 0.96999 * 120.00089 * 354.07170 * 18 17 15 45 45 H 1.08994 * 109.59013 * 173.14091 * 23 14 13 46 46 H 1.09000 * 109.58360 * 293.56922 * 23 14 13 47 47 H 1.09001 * 109.56100 * 185.55652 * 24 23 14 48 48 H 1.09001 * 109.36076 * 65.50285 * 24 23 14 49 49 H 1.09004 * 109.47294 * 59.99935 * 26 25 6 50 50 H 1.08992 * 109.47217 * 180.02562 * 26 25 6 51 51 H 1.09003 * 109.47337 * 300.00318 * 26 25 6 52 52 H 1.08999 * 109.47366 * 57.50330 * 27 25 6 53 53 H 1.08999 * 109.46932 * 177.50918 * 27 25 6 54 54 H 1.08999 * 109.46754 * 297.50630 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0722 -0.7805 1.2232 5 6 3.4908 -1.1970 0.7615 6 6 3.3166 -1.5413 -0.7321 7 6 4.5472 -1.0894 -1.5211 8 6 3.1130 -3.0251 -0.8994 9 8 2.9769 -3.7323 0.0765 10 7 3.0821 -3.5662 -2.1334 11 6 2.8835 -5.0085 -2.2960 12 6 3.4854 -5.4590 -3.6291 13 6 3.3067 -6.9729 -3.7800 14 7 1.8832 -7.2993 -3.6197 15 6 1.2213 -8.0225 -4.5758 16 1 1.5095 -7.9374 -5.6131 17 6 0.1799 -8.8649 -4.2116 18 7 0.1209 -9.3477 -2.9885 19 14 -1.1378 -9.3136 -5.4573 20 1 -0.8445 -8.6450 -6.7504 21 1 -2.4631 -8.8665 -4.9588 22 1 -1.1534 -10.7857 -5.6530 23 6 1.1817 -6.8298 -2.4170 24 6 1.3857 -5.3221 -2.2789 25 6 2.0700 -0.7803 -1.2163 26 6 2.4508 0.1912 -2.3352 27 6 1.0140 -1.7683 -1.7159 28 1 -0.3633 0.4968 0.8996 29 1 -0.3632 0.5306 -0.8801 30 1 -0.3633 -1.0275 -0.0195 31 1 1.4581 -1.6583 1.4244 32 1 2.1252 -0.1356 2.1004 33 1 3.8317 -2.0705 1.3172 34 1 4.1898 -0.3696 0.8833 35 1 4.3988 -1.3033 -2.5795 36 1 4.6933 -0.0180 -1.3839 37 1 5.4259 -1.6249 -1.1618 38 1 3.1905 -3.0005 -2.9139 39 1 3.3746 -5.5370 -1.4789 40 1 4.5473 -5.2141 -3.6500 41 1 2.9779 -4.9493 -4.4481 42 1 3.8880 -7.4875 -3.0148 43 1 3.6439 -7.2839 -4.7687 44 1 0.8482 -9.1857 -2.3675 45 1 0.1173 -7.0464 -2.5068 46 1 1.5862 -7.3324 -1.5385 47 1 0.9532 -4.9800 -1.3387 48 1 0.8980 -4.8138 -3.1106 49 1 2.8775 -0.3651 -3.1699 50 1 1.5619 0.7253 -2.6708 51 1 3.1843 0.9058 -1.9620 52 1 0.7639 -2.4673 -0.9178 53 1 0.1189 -1.2229 -2.0151 54 1 1.4069 -2.3185 -2.5709 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590905267.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:03 Heat of formation + Delta-G solvation = -56.569543 kcal Electronic energy + Delta-G solvation = -30178.869838 eV Core-core repulsion = 26535.281305 eV Total energy + Delta-G solvation = -3643.588533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.31482 -39.95224 -38.70313 -36.28669 -34.44562 -33.73051 -33.03167 -31.94280 -31.02923 -29.09601 -28.46333 -26.77018 -25.17161 -24.55949 -24.16492 -23.87354 -22.30594 -21.29303 -20.56169 -19.54299 -19.00959 -17.57792 -17.39940 -16.59300 -16.37583 -16.17161 -15.91593 -15.54289 -15.39089 -15.22187 -14.89861 -14.61727 -14.42122 -14.33500 -14.25574 -14.01321 -13.85343 -13.51216 -13.34749 -13.24245 -13.00499 -12.77622 -12.59269 -12.51114 -12.35123 -12.17618 -12.13291 -12.03679 -11.92441 -11.82809 -11.75017 -11.63514 -11.58165 -11.37415 -11.31107 -11.30064 -11.10597 -10.57241 -10.49343 -9.96012 -8.97416 -8.26737 -5.47943 1.57457 1.65621 1.69093 1.81555 2.18090 2.63932 3.19414 3.39105 3.47551 3.50506 3.62276 3.75342 3.92598 4.03625 4.17703 4.19697 4.24678 4.28448 4.33288 4.34489 4.43492 4.47146 4.52230 4.62421 4.65409 4.70323 4.75672 4.79184 4.84982 4.88680 4.89737 4.92566 4.95275 4.98674 5.02607 5.07404 5.09687 5.11188 5.16978 5.18294 5.22157 5.26499 5.27276 5.35600 5.37324 5.46203 5.53101 5.54715 5.62249 5.85357 6.35097 6.60573 7.02399 7.31588 7.73196 8.20337 8.96511 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.019277 B = 0.003352 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.192260 B = 8351.359505 C = 8766.788263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 H 0.100 0.900 4 C -0.121 4.121 5 C -0.107 4.107 6 C -0.074 4.074 7 C -0.139 4.139 8 C 0.527 3.473 9 O -0.589 6.589 10 N -0.709 5.709 11 C 0.164 3.836 12 C -0.121 4.121 13 C 0.143 3.857 14 N -0.614 5.614 15 C -0.356 4.356 16 H 0.056 0.944 17 C -0.075 4.075 18 N -0.943 5.943 19 Si 1.120 2.880 20 H -0.268 1.268 21 H -0.289 1.289 22 H -0.291 1.291 23 C 0.166 3.834 24 C -0.120 4.120 25 C -0.045 4.045 26 C -0.139 4.139 27 C -0.151 4.151 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.039 0.961 31 H 0.037 0.963 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.051 0.949 38 H 0.411 0.589 39 H 0.053 0.947 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.010 0.990 43 H 0.064 0.936 44 H 0.251 0.749 45 H 0.040 0.960 46 H -0.008 1.008 47 H 0.044 0.956 48 H 0.063 0.937 49 H 0.065 0.935 50 H 0.061 0.939 51 H 0.079 0.921 52 H 0.024 0.976 53 H 0.070 0.930 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.754 26.203 1.349 27.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.098 4.098 3 H 0.118 0.882 4 C -0.158 4.158 5 C -0.145 4.145 6 C -0.077 4.077 7 C -0.196 4.196 8 C 0.315 3.685 9 O -0.469 6.469 10 N -0.361 5.361 11 C 0.059 3.941 12 C -0.160 4.160 13 C 0.018 3.982 14 N -0.339 5.339 15 C -0.486 4.486 16 H 0.073 0.927 17 C -0.272 4.272 18 N -0.585 5.585 19 Si 0.944 3.056 20 H -0.192 1.192 21 H -0.216 1.216 22 H -0.218 1.218 23 C 0.039 3.961 24 C -0.160 4.160 25 C -0.046 4.046 26 C -0.196 4.196 27 C -0.209 4.209 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.070 0.930 38 H 0.249 0.751 39 H 0.071 0.929 40 H 0.110 0.890 41 H 0.093 0.907 42 H 0.028 0.972 43 H 0.082 0.918 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.010 0.990 47 H 0.063 0.937 48 H 0.082 0.918 49 H 0.084 0.916 50 H 0.080 0.920 51 H 0.098 0.902 52 H 0.043 0.957 53 H 0.089 0.911 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.261 24.886 1.780 25.723 hybrid contribution 1.183 -0.126 0.511 1.295 sum 7.444 24.760 2.290 25.956 Atomic orbital electron populations 1.21897 0.95183 1.01165 1.02141 1.22059 0.95498 0.99449 0.92812 0.88219 1.22530 0.95697 0.99065 0.98545 1.22355 0.98098 1.01364 0.92648 1.21583 0.98583 0.88878 0.98618 1.22069 0.94274 1.03407 0.99846 1.21059 0.73880 0.91202 0.82314 1.90671 1.51545 1.64316 1.40365 1.46162 1.73339 1.08113 1.08504 1.20558 0.94526 0.81121 0.97930 1.22114 1.01383 0.96885 0.95615 1.21033 0.84507 0.93613 0.99096 1.44343 1.05820 1.61771 1.21996 1.20261 1.18161 1.21309 0.88853 0.92670 1.27340 1.04280 0.93938 1.01608 1.70846 1.35910 1.43450 1.08250 0.82818 0.73603 0.75869 0.73325 1.19236 1.21604 1.21766 1.20542 0.95954 0.91853 0.87721 1.22081 0.96993 0.96780 1.00152 1.21147 0.92017 0.94807 0.96607 1.22045 1.02240 0.98421 0.96853 1.22286 0.99748 0.98595 1.00232 0.92242 0.91532 0.94209 0.94433 0.90093 0.93068 0.88421 0.90688 0.88536 0.93022 0.75136 0.92895 0.88984 0.90712 0.97221 0.91769 0.93890 0.94119 0.98953 0.93705 0.91825 0.91565 0.91951 0.90214 0.95654 0.91112 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.00 71.99 0.58 -1.84 16 2 C -0.08 -1.25 2.91 -9.72 -0.03 -1.28 16 3 H 0.10 1.13 7.84 -2.39 -0.02 1.11 16 4 C -0.12 -2.40 6.33 31.88 0.20 -2.19 16 5 C -0.11 -2.15 5.65 31.67 0.18 -1.98 16 6 C -0.07 -1.42 0.81 -52.20 -0.04 -1.47 16 7 C -0.14 -1.79 7.01 71.98 0.50 -1.29 16 8 C 0.53 15.09 4.61 87.66 0.40 15.49 16 9 O -0.59 -23.01 15.13 -3.05 -0.05 -23.06 16 10 N -0.71 -18.64 3.37 -442.40 -1.49 -20.13 16 11 C 0.16 5.61 2.42 45.02 0.11 5.72 16 12 C -0.12 -3.78 5.55 30.67 0.17 -3.61 16 13 C 0.14 5.93 6.52 86.36 0.56 6.49 16 14 N -0.61 -31.47 2.80 -699.94 -1.96 -33.43 16 15 C -0.36 -20.09 9.45 84.03 0.79 -19.29 16 16 H 0.06 3.06 7.94 -2.91 -0.02 3.04 16 17 C -0.08 -4.36 4.67 84.86 0.40 -3.96 16 18 N -0.94 -59.51 12.56 21.65 0.27 -59.24 16 19 Si 1.12 51.56 29.98 68.60 2.06 53.61 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 22 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 23 C 0.17 8.40 4.72 86.22 0.41 8.81 16 24 C -0.12 -4.85 5.63 30.53 0.17 -4.68 16 25 C -0.05 -0.75 0.86 -51.46 -0.04 -0.79 16 26 C -0.14 -1.45 7.21 71.98 0.52 -0.93 16 27 C -0.15 -3.33 5.97 71.98 0.43 -2.90 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.93 7.85 -2.39 -0.02 0.91 16 30 H 0.04 0.83 6.38 -2.39 -0.02 0.82 16 31 H 0.04 0.99 8.06 -2.38 -0.02 0.97 16 32 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.05 1.36 6.95 -2.39 -0.02 1.35 16 34 H 0.10 1.39 7.84 -2.39 -0.02 1.37 16 35 H 0.07 0.78 5.85 -2.39 -0.01 0.77 16 36 H 0.10 0.79 6.68 -2.39 -0.02 0.77 16 37 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.41 8.11 6.81 -92.71 -0.63 7.48 16 39 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 40 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 42 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 43 H 0.06 2.58 7.93 -2.39 -0.02 2.56 16 44 H 0.25 16.40 6.86 -92.71 -0.64 15.76 16 45 H 0.04 2.31 6.58 -2.39 -0.02 2.30 16 46 H -0.01 -0.41 7.87 -2.39 -0.02 -0.43 16 47 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 49 H 0.07 0.62 6.76 -2.39 -0.02 0.60 16 50 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.08 0.57 6.70 -2.39 -0.02 0.55 16 52 H 0.02 0.73 6.85 -2.39 -0.02 0.71 16 53 H 0.07 1.39 6.73 -2.39 -0.02 1.37 16 54 H 0.06 1.35 5.70 -2.39 -0.01 1.34 16 Total: -1.00 -73.70 388.54 4.51 -69.19 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.37 Total: 22.74 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 5.31 Total: -9.69 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -3.18 Total: -112.80 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.05 Total: -23.06 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 2.06 Total: 53.61 kcal Total: -73.70 4.51 -69.19 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590905267.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.622 kcal (2) G-P(sol) polarization free energy of solvation -73.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds