Wall clock time and date at job start Tue Mar 31 2020 15:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47032 * 2 1 4 4 C 1.53003 * 109.46803 * 240.00208 * 2 1 3 5 5 C 1.53004 * 109.47195 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.46878 * 60.00011 * 5 4 2 7 7 H 1.09004 * 109.47223 * 180.02562 * 6 5 4 8 8 N 1.46495 * 109.47171 * 60.00064 * 6 5 4 9 9 C 1.34780 * 119.99870 * 85.00284 * 8 6 5 10 10 O 1.21590 * 119.99860 * 354.92255 * 9 8 6 11 11 N 1.34776 * 120.00138 * 174.92987 * 9 8 6 12 12 C 1.46932 * 120.62995 * 4.73885 * 11 9 8 13 13 C 1.52758 * 109.00900 * 233.58492 * 12 11 9 14 14 C 1.53043 * 109.38283 * 305.59086 * 13 12 11 15 15 C 1.53003 * 109.45962 * 181.26118 * 14 13 12 16 16 C 1.50702 * 109.47001 * 64.92851 * 15 14 13 17 17 H 1.07998 * 120.00071 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99852 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99575 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99965 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47181 * 90.00005 * 20 18 16 22 22 H 1.48505 * 109.47127 * 210.00050 * 20 18 16 23 23 H 1.48503 * 109.47265 * 329.99914 * 20 18 16 24 24 C 1.53033 * 109.54095 * 61.23808 * 14 13 12 25 25 C 1.46923 * 120.63343 * 185.01670 * 11 9 8 26 26 C 1.53003 * 109.47198 * 299.99987 * 6 5 4 27 27 H 1.09001 * 109.47156 * 300.00164 * 26 6 5 28 28 C 1.53004 * 109.46868 * 180.02562 * 26 6 5 29 29 C 1.52994 * 109.47664 * 120.00378 * 2 1 3 30 30 H 1.08994 * 109.46801 * 299.99378 * 1 2 3 31 31 H 1.09000 * 109.47183 * 59.99873 * 1 2 3 32 32 H 1.09001 * 109.47032 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47401 * 300.00171 * 4 2 1 34 34 H 1.09000 * 109.47317 * 60.00001 * 4 2 1 35 35 H 1.08994 * 109.47193 * 180.02562 * 5 4 2 36 36 H 1.09001 * 109.47103 * 300.00075 * 5 4 2 37 37 H 0.96998 * 120.00333 * 264.99988 * 8 6 5 38 38 H 1.08997 * 109.58210 * 353.42139 * 12 11 9 39 39 H 1.08997 * 109.58495 * 113.84287 * 12 11 9 40 40 H 1.08992 * 109.56310 * 185.55370 * 13 12 11 41 41 H 1.09003 * 109.35617 * 65.49860 * 13 12 11 42 42 H 1.09001 * 109.45775 * 301.21790 * 14 13 12 43 43 H 1.08998 * 109.46898 * 184.92920 * 15 14 13 44 44 H 1.09001 * 109.46632 * 304.93202 * 15 14 13 45 45 H 0.97003 * 119.99892 * 180.02562 * 19 18 16 46 46 H 1.08999 * 109.50167 * 178.68705 * 24 14 13 47 47 H 1.09003 * 109.52651 * 58.60341 * 24 14 13 48 48 H 1.09001 * 109.58962 * 246.15447 * 25 11 9 49 49 H 1.08997 * 109.58517 * 6.58401 * 25 11 9 50 50 H 1.09001 * 109.47209 * 299.99940 * 28 26 6 51 51 H 1.09000 * 109.47050 * 60.00323 * 28 26 6 52 52 H 1.09000 * 109.46560 * 180.02562 * 28 26 6 53 53 H 1.09001 * 109.47204 * 59.99728 * 29 2 1 54 54 H 1.09003 * 109.47061 * 300.00268 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2497 6 6 4.0805 -1.4417 -0.0006 7 1 5.1705 -1.4409 -0.0006 8 7 3.5926 -2.8230 -0.0003 9 6 4.2696 -3.7769 -0.6698 10 8 5.2321 -3.4760 -1.3491 11 7 3.8797 -5.0643 -0.5864 12 6 2.6593 -5.4310 0.1451 13 6 3.0009 -6.5054 1.1758 14 6 3.6917 -7.6786 0.4768 15 6 4.0064 -8.7694 1.5025 16 6 2.7193 -9.3309 2.0496 17 1 1.7717 -8.9484 1.7003 18 6 2.7516 -10.3331 2.9960 19 7 3.9056 -10.7992 3.4209 20 14 1.1564 -11.0286 3.6746 21 1 0.7199 -12.1744 2.8369 22 1 1.3711 -11.4891 5.0700 23 1 0.1098 -9.9752 3.6566 24 6 4.9922 -7.1957 -0.1692 25 6 4.6701 -6.1285 -1.2200 26 6 3.5705 -0.7204 1.2487 27 1 3.9335 0.3074 1.2485 28 6 4.0816 -1.4411 2.4979 29 6 2.0401 -0.7213 1.2491 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6766 -1.7489 -1.2494 34 1 1.6766 -0.2074 -2.1393 35 1 3.9332 -1.2341 -2.1399 36 1 3.9330 0.3071 -1.2499 37 1 2.7824 -3.0511 0.4817 38 1 2.2601 -4.5531 0.6529 39 1 1.9182 -5.8206 -0.5528 40 1 2.0867 -6.8549 1.6554 41 1 3.6691 -6.0853 1.9276 42 1 3.0326 -8.0824 -0.2918 43 1 4.5755 -9.5658 1.0229 44 1 4.5924 -8.3438 2.3171 45 1 3.9284 -11.5045 4.0865 46 1 5.4953 -8.0364 -0.6469 47 1 5.6422 -6.7693 0.5949 48 1 4.0963 -6.5761 -2.0315 49 1 5.5972 -5.7106 -1.6125 50 1 3.7190 -2.4690 2.4983 51 1 5.1716 -1.4403 2.4974 52 1 3.7180 -0.9275 3.3879 53 1 1.6768 -1.7490 1.2491 54 1 1.6768 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591936931.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:49 Heat of formation + Delta-G solvation = -84.563538 kcal Electronic energy + Delta-G solvation = -29166.016802 eV Core-core repulsion = 25521.214358 eV Total energy + Delta-G solvation = -3644.802444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.77551 -40.11701 -38.57126 -35.68628 -35.40877 -34.07761 -33.48765 -32.30357 -31.47563 -29.70848 -27.50577 -27.03309 -26.13923 -24.18265 -23.73038 -22.91306 -21.66477 -21.54362 -20.58864 -19.96598 -19.11029 -18.38936 -17.17618 -16.66627 -16.54534 -16.23120 -15.75773 -15.57440 -15.21891 -15.20989 -14.79911 -14.73281 -14.68060 -14.39318 -14.24987 -14.00786 -13.88367 -13.37139 -13.31627 -13.19889 -12.96185 -12.80990 -12.73624 -12.67632 -12.50390 -12.30420 -12.25741 -12.13001 -12.08080 -11.76410 -11.73979 -11.38951 -11.32786 -11.22061 -11.09807 -10.98805 -10.86699 -10.83091 -10.50901 -10.07850 -9.40293 -8.15020 -6.24648 1.42802 1.43360 1.53922 1.70668 2.18829 2.43941 2.94228 3.18896 3.66787 3.77075 3.80885 3.91380 4.01296 4.09511 4.11405 4.21106 4.23185 4.40260 4.42959 4.43941 4.51844 4.54593 4.65732 4.67301 4.69405 4.78166 4.81346 4.87598 4.90356 4.94558 4.98275 5.03244 5.08057 5.09542 5.14284 5.17971 5.24202 5.29569 5.32294 5.33413 5.39272 5.40725 5.44503 5.48955 5.56435 5.60915 5.61274 5.71577 5.82907 5.90894 6.03218 6.30424 6.92392 7.00053 7.44201 7.60049 8.97039 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.015148 B = 0.003038 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.019438 B = 9215.689058 C =10073.982649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 H 0.079 0.921 4 C -0.107 4.107 5 C -0.126 4.126 6 C 0.167 3.833 7 H 0.061 0.939 8 N -0.725 5.725 9 C 0.704 3.296 10 O -0.635 6.635 11 N -0.626 5.626 12 C 0.120 3.880 13 C -0.111 4.111 14 C -0.071 4.071 15 C 0.033 3.967 16 C -0.525 4.525 17 H 0.068 0.932 18 C -0.004 4.004 19 N -0.938 5.938 20 Si 0.960 3.040 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.257 1.257 24 C -0.121 4.121 25 C 0.138 3.862 26 C -0.089 4.089 27 H 0.099 0.901 28 C -0.147 4.147 29 C -0.108 4.108 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.042 0.958 36 H 0.083 0.917 37 H 0.402 0.598 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.043 0.957 42 H 0.063 0.937 43 H -0.015 1.015 44 H -0.017 1.017 45 H 0.260 0.740 46 H 0.071 0.929 47 H 0.043 0.957 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.045 0.955 51 H 0.045 0.955 52 H 0.070 0.930 53 H 0.056 0.944 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.933 24.372 -6.362 26.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 H 0.097 0.903 4 C -0.145 4.145 5 C -0.165 4.165 6 C 0.062 3.938 7 H 0.079 0.921 8 N -0.383 5.383 9 C 0.405 3.595 10 O -0.517 6.517 11 N -0.363 5.363 12 C -0.002 4.002 13 C -0.150 4.150 14 C -0.090 4.090 15 C -0.004 4.004 16 C -0.563 4.563 17 H 0.086 0.914 18 C -0.201 4.201 19 N -0.579 5.579 20 Si 0.785 3.215 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.181 1.181 24 C -0.160 4.160 25 C 0.015 3.985 26 C -0.108 4.108 27 H 0.117 0.883 28 C -0.205 4.205 29 C -0.146 4.146 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.102 0.898 37 H 0.242 0.758 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.003 0.997 44 H 0.002 0.998 45 H 0.069 0.931 46 H 0.090 0.910 47 H 0.062 0.938 48 H 0.096 0.904 49 H 0.096 0.904 50 H 0.064 0.936 51 H 0.065 0.935 52 H 0.089 0.911 53 H 0.075 0.925 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.180 24.485 -6.714 26.130 hybrid contribution -0.382 -1.296 0.794 1.567 sum -6.562 23.189 -5.920 24.816 Atomic orbital electron populations 1.21815 0.94724 1.01808 1.02047 1.21117 0.95745 0.99751 0.93907 0.90295 1.21509 0.94270 1.00389 0.98304 1.21873 0.96792 1.00712 0.97095 1.20868 0.97915 0.79321 0.95659 0.92093 1.45317 1.29947 1.07857 1.55190 1.16017 0.82213 0.81080 0.80176 1.90842 1.32070 1.81835 1.46967 1.47361 1.27544 1.04613 1.56744 1.21675 0.85878 0.98388 0.94310 1.21690 1.01180 0.94867 0.97233 1.21014 0.95608 0.95209 0.97177 1.19013 0.95439 0.92821 0.93113 1.21672 0.93828 1.18778 1.22047 0.91355 1.25977 0.99451 0.97404 0.97287 1.70119 1.26882 1.28993 1.31940 0.85516 0.79808 0.78930 0.77219 1.20161 1.21433 1.18122 1.21924 0.97908 0.98058 0.98085 1.21397 0.96025 0.86572 0.94477 1.21397 0.96552 1.00208 0.92624 0.88269 1.21813 1.00654 1.00307 0.97688 1.21675 0.93623 1.00731 0.98542 0.92003 0.92536 0.93074 0.93033 0.91764 0.93946 0.89834 0.75790 0.88996 0.89918 0.90482 0.93769 0.91821 0.99679 0.99839 0.93096 0.91028 0.93771 0.90418 0.90368 0.93633 0.93548 0.91065 0.92507 0.90234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.19 71.98 0.66 -0.87 16 2 C -0.09 -0.98 2.72 -10.79 -0.03 -1.01 16 3 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 4 C -0.11 -1.59 5.04 30.60 0.15 -1.43 16 5 C -0.13 -2.28 5.60 30.59 0.17 -2.11 16 6 C 0.17 3.31 2.19 44.99 0.10 3.41 16 7 H 0.06 1.52 7.66 -2.39 -0.02 1.50 16 8 N -0.72 -16.24 3.45 -457.82 -1.58 -17.82 16 9 C 0.70 21.24 8.26 179.05 1.48 22.72 16 10 O -0.63 -23.84 15.45 -4.00 -0.06 -23.91 16 11 N -0.63 -18.03 2.98 -837.74 -2.50 -20.53 16 12 C 0.12 3.00 6.40 86.22 0.55 3.55 16 13 C -0.11 -3.69 5.17 30.53 0.16 -3.53 16 14 C -0.07 -2.75 2.10 -10.77 -0.02 -2.77 16 15 C 0.03 1.70 4.45 29.85 0.13 1.83 16 16 C -0.53 -28.40 8.39 25.60 0.21 -28.19 16 17 H 0.07 3.45 7.06 -2.91 -0.02 3.43 16 18 C 0.00 -0.24 5.46 84.66 0.46 0.23 16 19 N -0.94 -56.95 13.29 21.45 0.28 -56.67 16 20 Si 0.96 43.14 29.54 68.60 2.03 45.16 16 21 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 22 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 24 C -0.12 -4.19 5.36 30.67 0.16 -4.02 16 25 C 0.14 4.17 6.42 86.36 0.55 4.73 16 26 C -0.09 -1.24 2.51 -10.78 -0.03 -1.27 16 27 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 28 C -0.15 -2.36 9.04 71.98 0.65 -1.71 16 29 C -0.11 -1.26 4.32 30.61 0.13 -1.13 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 0.88 7.61 -2.39 -0.02 0.86 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.04 1.01 8.09 -2.39 -0.02 0.99 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.40 7.56 4.11 -92.71 -0.38 7.18 16 38 H 0.09 1.79 5.57 -2.39 -0.01 1.78 16 39 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.08 2.67 6.91 -2.39 -0.02 2.65 16 41 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 43 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 44 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 45 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 46 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.08 2.51 7.03 -2.39 -0.02 2.49 16 50 H 0.04 0.84 7.45 -2.39 -0.02 0.83 16 51 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 52 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 53 H 0.06 0.72 6.51 -2.39 -0.02 0.71 16 54 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -68.41 401.50 4.14 -64.27 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.46 Total: 21.06 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 5.51 Total: -11.57 kcal Atomic # 7 Polarization: -91.22 SS G_CDS: -3.79 Total: -95.01 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.06 Total: -23.91 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -68.41 4.14 -64.27 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591936931.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.293 kcal (2) G-P(sol) polarization free energy of solvation -68.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds