Wall clock time and date at job start Tue Mar 31 2020 15:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47035 * 2 1 4 4 C 1.52998 * 109.46938 * 240.00143 * 2 1 3 5 5 C 1.53005 * 109.46938 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46963 * 59.99984 * 5 4 2 7 7 H 1.08997 * 109.47349 * 60.00065 * 6 5 4 8 8 N 1.46497 * 109.46848 * 180.02562 * 6 5 4 9 9 C 1.34774 * 120.00075 * 274.99818 * 8 6 5 10 10 O 1.21584 * 119.99694 * 4.97973 * 9 8 6 11 11 N 1.34778 * 120.00192 * 184.97939 * 9 8 6 12 12 C 1.46927 * 120.63203 * 174.77271 * 11 9 8 13 13 C 1.53184 * 108.77659 * 126.36693 * 12 11 9 14 14 C 1.53048 * 109.31417 * 54.63592 * 13 12 11 15 15 C 1.52997 * 109.46178 * 178.62704 * 14 13 12 16 16 C 1.50705 * 109.47005 * 185.02686 * 15 14 13 17 17 H 1.07992 * 120.00124 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99787 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99956 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 120.00042 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47170 * 89.99922 * 20 18 16 22 22 H 1.48500 * 109.46721 * 209.99976 * 20 18 16 23 23 H 1.48500 * 109.47186 * 329.99438 * 20 18 16 24 24 C 1.53039 * 109.53548 * 298.63494 * 14 13 12 25 25 C 1.46931 * 120.63205 * 354.74802 * 11 9 8 26 26 C 1.53004 * 109.46877 * 300.00024 * 6 5 4 27 27 H 1.08993 * 109.47366 * 299.99669 * 26 6 5 28 28 C 1.53002 * 109.46877 * 180.02562 * 26 6 5 29 29 C 1.52992 * 109.46925 * 120.00114 * 2 1 3 30 30 H 1.08994 * 109.47544 * 299.99690 * 1 2 3 31 31 H 1.09005 * 109.46838 * 59.99935 * 1 2 3 32 32 H 1.09002 * 109.46974 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47618 * 299.99559 * 4 2 1 34 34 H 1.09005 * 109.47420 * 60.00279 * 4 2 1 35 35 H 1.09005 * 109.46678 * 300.00336 * 5 4 2 36 36 H 1.08994 * 109.47544 * 180.02562 * 5 4 2 37 37 H 0.97000 * 119.99972 * 95.00202 * 8 6 5 38 38 H 1.08997 * 109.58284 * 6.57932 * 12 11 9 39 39 H 1.08999 * 109.58427 * 246.15621 * 12 11 9 40 40 H 1.08999 * 109.50306 * 294.68450 * 13 12 11 41 41 H 1.09001 * 109.49661 * 174.58478 * 13 12 11 42 42 H 1.08998 * 109.45807 * 58.65496 * 14 13 12 43 43 H 1.08998 * 109.47106 * 305.02439 * 15 14 13 44 44 H 1.08997 * 109.47326 * 65.02756 * 15 14 13 45 45 H 0.97000 * 119.99967 * 180.02562 * 19 18 16 46 46 H 1.08996 * 109.49714 * 181.31661 * 24 14 13 47 47 H 1.08996 * 109.49543 * 301.41088 * 24 14 13 48 48 H 1.09006 * 109.57908 * 353.41823 * 25 11 9 49 49 H 1.08997 * 109.58793 * 113.84299 * 25 11 9 50 50 H 1.09007 * 109.47175 * 60.00092 * 28 26 6 51 51 H 1.09001 * 109.47545 * 179.97438 * 28 26 6 52 52 H 1.09005 * 109.47136 * 300.00609 * 28 26 6 53 53 H 1.09006 * 109.47193 * 60.00097 * 29 2 1 54 54 H 1.08996 * 109.47676 * 300.00385 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2489 6 6 4.0795 -1.4434 0.0003 7 1 3.7158 -2.4709 0.0001 8 7 5.5445 -1.4434 0.0009 9 6 6.2186 -2.3993 -0.6686 10 8 5.6144 -3.2076 -1.3467 11 7 7.5625 -2.4593 -0.5863 12 6 8.3027 -3.5613 -1.2160 13 6 9.3791 -2.9718 -2.1328 14 6 10.2533 -2.0051 -1.3306 15 6 11.3509 -1.4404 -2.2346 16 6 12.2847 -0.5856 -1.4171 17 1 12.1124 -0.4575 -0.3587 18 6 13.3591 0.0330 -2.0204 19 7 14.1743 0.7786 -1.3069 20 14 13.6568 -0.1878 -3.8513 21 1 12.9411 0.8756 -4.6010 22 1 15.1124 -0.0964 -4.1306 23 1 13.1536 -1.5184 -4.2777 24 6 9.3917 -0.8580 -0.7976 25 6 8.3154 -1.4235 0.1343 26 6 3.5694 -0.7222 1.2496 27 1 3.9331 0.3053 1.2499 28 6 4.0794 -1.4434 2.4988 29 6 2.0400 -0.7212 1.2492 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6768 -1.7489 -1.2493 34 1 1.6767 -0.2073 -2.1393 35 1 3.9337 0.3058 -1.2486 36 1 3.9334 -1.2351 -2.1391 37 1 6.0292 -0.7555 0.4832 38 1 7.6177 -4.1730 -1.8031 39 1 8.7732 -4.1724 -0.4459 40 1 8.9038 -2.4361 -2.9544 41 1 9.9975 -3.7760 -2.5316 42 1 10.7088 -2.5359 -0.4946 43 1 11.9095 -2.2613 -2.6841 44 1 10.8987 -0.8353 -3.0205 45 1 14.9300 1.2141 -1.7314 46 1 10.0190 -0.1577 -0.2462 47 1 8.9163 -0.3422 -1.6319 48 1 7.6387 -0.6248 0.4381 49 1 8.7870 -1.8604 1.0145 50 1 5.1695 -1.4434 2.4988 51 1 3.7164 -0.9294 3.3888 52 1 3.7161 -2.4712 2.4987 53 1 1.6766 -1.7490 1.2491 54 1 1.6766 -0.2076 2.1392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591936932.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:52 Heat of formation + Delta-G solvation = -86.141692 kcal Electronic energy + Delta-G solvation = -28575.549366 eV Core-core repulsion = 24930.678489 eV Total energy + Delta-G solvation = -3644.870878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.65422 -40.07001 -38.64262 -35.82850 -35.63135 -34.12166 -33.51457 -32.28790 -31.49372 -30.17326 -27.47911 -26.98123 -25.84493 -24.21078 -23.49901 -22.81716 -21.59307 -21.32437 -20.98380 -20.24584 -19.09210 -18.73928 -17.49902 -16.58893 -16.35261 -16.16666 -15.74672 -15.46971 -15.30059 -15.24281 -14.94224 -14.91767 -14.66891 -14.49356 -14.14965 -14.08012 -13.78790 -13.52719 -13.33897 -13.21457 -13.10163 -13.01718 -12.87877 -12.68455 -12.41588 -12.18868 -12.14728 -11.98860 -11.96518 -11.74346 -11.67655 -11.51649 -11.37900 -11.30427 -11.15424 -11.07930 -10.93198 -10.89080 -10.72105 -10.10086 -9.42157 -8.25376 -6.26378 1.34950 1.37231 1.47986 1.68970 2.15413 2.37473 2.91293 3.10393 3.62890 3.73659 3.87461 3.92403 3.99316 4.04585 4.09724 4.20628 4.21175 4.38373 4.40679 4.45093 4.46748 4.53197 4.54617 4.64866 4.76544 4.80115 4.82891 4.84379 4.87511 4.94027 4.94963 5.01568 5.06042 5.08736 5.12372 5.18044 5.19365 5.21602 5.24805 5.26342 5.34135 5.38741 5.42184 5.44132 5.46858 5.59848 5.60678 5.67789 5.73529 5.75024 6.02444 6.34760 6.80928 6.98160 7.37448 7.58347 8.90648 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.020967 B = 0.002481 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.096641 B =11283.682958 C =11390.780577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.075 0.925 4 C -0.107 4.107 5 C -0.127 4.127 6 C 0.172 3.828 7 H 0.062 0.938 8 N -0.731 5.731 9 C 0.704 3.296 10 O -0.634 6.634 11 N -0.625 5.625 12 C 0.135 3.865 13 C -0.123 4.123 14 C -0.068 4.068 15 C -0.008 4.008 16 C -0.513 4.513 17 H 0.044 0.956 18 C 0.004 3.996 19 N -0.951 5.951 20 Si 0.940 3.060 21 H -0.272 1.272 22 H -0.287 1.287 23 H -0.251 1.251 24 C -0.115 4.115 25 C 0.120 3.880 26 C -0.091 4.091 27 H 0.085 0.915 28 C -0.145 4.145 29 C -0.101 4.101 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.038 0.962 37 H 0.405 0.595 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.051 0.949 41 H 0.080 0.920 42 H 0.061 0.939 43 H 0.015 0.985 44 H 0.008 0.992 45 H 0.263 0.737 46 H 0.067 0.933 47 H 0.049 0.951 48 H 0.095 0.905 49 H 0.080 0.920 50 H 0.052 0.948 51 H 0.071 0.929 52 H 0.046 0.954 53 H 0.060 0.940 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.849 -2.717 6.240 27.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.093 0.907 4 C -0.145 4.145 5 C -0.166 4.166 6 C 0.067 3.933 7 H 0.081 0.919 8 N -0.388 5.388 9 C 0.406 3.594 10 O -0.516 6.516 11 N -0.362 5.362 12 C 0.012 3.988 13 C -0.161 4.161 14 C -0.087 4.087 15 C -0.045 4.045 16 C -0.551 4.551 17 H 0.063 0.937 18 C -0.192 4.192 19 N -0.592 5.592 20 Si 0.765 3.235 21 H -0.197 1.197 22 H -0.213 1.213 23 H -0.174 1.174 24 C -0.153 4.153 25 C -0.003 4.003 26 C -0.110 4.110 27 H 0.103 0.897 28 C -0.202 4.202 29 C -0.139 4.139 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.243 0.757 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.033 0.967 44 H 0.027 0.973 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.068 0.932 48 H 0.113 0.887 49 H 0.098 0.902 50 H 0.071 0.929 51 H 0.090 0.910 52 H 0.066 0.934 53 H 0.079 0.921 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -27.136 -3.214 5.773 27.929 hybrid contribution 1.235 0.480 -0.813 1.555 sum -25.901 -2.734 4.959 26.513 Atomic orbital electron populations 1.21804 0.94406 1.01920 1.02139 1.21156 0.96078 0.99638 0.94072 0.90703 1.21530 0.93571 1.00786 0.98639 1.21893 0.96797 1.00485 0.97412 1.20876 0.77477 0.99594 0.95358 0.91944 1.45324 1.07302 1.30611 1.55565 1.16003 0.81628 0.81766 0.80034 1.90846 1.68388 1.45652 1.46730 1.47378 1.03844 1.27689 1.57280 1.21447 0.93137 0.87993 0.96266 1.21956 0.96824 0.99340 0.97980 1.20903 0.94523 0.95473 0.97772 1.19589 0.94223 0.95254 0.95456 1.21448 1.09450 1.28133 0.96062 0.93738 1.25902 0.95901 0.94823 1.02585 1.70050 1.16983 1.34111 1.38056 0.85810 0.77120 0.79895 0.80722 1.19748 1.21291 1.17425 1.21779 0.96436 0.97953 0.99135 1.21741 0.93834 0.90158 0.94530 1.21364 0.96737 0.99974 0.92898 0.89656 1.21802 1.01000 1.00183 0.97201 1.21589 0.92924 1.01104 0.98304 0.91809 0.92592 0.92830 0.92493 0.91498 0.91408 0.94279 0.75673 0.90130 0.90409 0.93036 0.90156 0.92021 0.96656 0.97315 0.92773 0.91419 0.93178 0.88737 0.90183 0.92937 0.91017 0.93439 0.92079 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.19 71.98 0.66 -0.77 16 2 C -0.09 -1.06 2.72 -10.80 -0.03 -1.09 16 3 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.11 -1.67 5.20 30.60 0.16 -1.51 16 5 C -0.13 -2.52 5.49 30.60 0.17 -2.35 16 6 C 0.17 3.36 1.86 44.99 0.08 3.45 16 7 H 0.06 1.53 7.65 -2.39 -0.02 1.51 16 8 N -0.73 -15.92 4.29 -457.82 -1.96 -17.88 16 9 C 0.70 20.62 8.26 179.05 1.48 22.10 16 10 O -0.63 -23.28 15.43 -3.98 -0.06 -23.34 16 11 N -0.63 -17.24 2.97 -836.92 -2.49 -19.73 16 12 C 0.13 3.77 6.44 86.36 0.56 4.32 16 13 C -0.12 -3.78 5.36 30.67 0.16 -3.61 16 14 C -0.07 -2.46 2.10 -10.77 -0.02 -2.48 16 15 C -0.01 -0.35 3.52 29.85 0.10 -0.25 16 16 C -0.51 -28.22 8.94 25.60 0.23 -27.99 16 17 H 0.04 2.64 7.30 -2.91 -0.02 2.62 16 18 C 0.00 0.25 5.47 84.65 0.46 0.71 16 19 N -0.95 -58.63 13.96 21.45 0.30 -58.33 16 20 Si 0.94 44.33 27.47 68.60 1.88 46.21 16 21 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 24 C -0.11 -3.77 5.19 30.67 0.16 -3.61 16 25 C 0.12 2.96 6.39 86.36 0.55 3.51 16 26 C -0.09 -1.20 2.29 -10.81 -0.02 -1.22 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 C -0.14 -1.88 9.04 71.98 0.65 -1.23 16 29 C -0.10 -1.14 4.48 30.57 0.14 -1.00 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.04 1.02 8.10 -2.39 -0.02 1.00 16 37 H 0.40 7.06 5.87 -92.71 -0.54 6.52 16 38 H 0.08 2.40 6.99 -2.39 -0.02 2.38 16 39 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.02 0.69 7.20 -2.39 -0.02 0.67 16 44 H 0.01 0.39 7.57 -2.39 -0.02 0.37 16 45 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 46 H 0.07 2.52 6.91 -2.39 -0.02 2.50 16 47 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.09 1.81 5.65 -2.38 -0.01 1.80 16 49 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.05 0.74 7.44 -2.38 -0.02 0.72 16 51 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 52 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 53 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 54 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -68.82 402.38 3.40 -65.42 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.24 Total: 20.69 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 5.49 Total: -13.04 kcal Atomic # 7 Polarization: -91.79 SS G_CDS: -4.15 Total: -95.94 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.06 Total: -23.34 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.21 kcal Total: -68.82 3.40 -65.42 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591936932.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.720 kcal (2) G-P(sol) polarization free energy of solvation -68.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds