Wall clock time and date at job start Tue Mar 31 2020 15:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47370 * 2 1 4 4 C 1.53005 * 109.46855 * 240.00043 * 2 1 3 5 5 C 1.53006 * 109.46737 * 300.00078 * 4 2 1 6 6 C 1.52995 * 109.47304 * 300.00011 * 5 4 2 7 7 H 1.09000 * 109.47259 * 300.00145 * 6 5 4 8 8 N 1.46504 * 109.46921 * 180.02562 * 6 5 4 9 9 C 1.34781 * 119.99861 * 85.00070 * 8 6 5 10 10 O 1.21583 * 119.99750 * 355.01882 * 9 8 6 11 11 N 1.34773 * 119.99698 * 175.02018 * 9 8 6 12 12 C 1.46926 * 120.63221 * 4.93942 * 11 9 8 13 13 C 1.53624 * 108.54344 * 126.37053 * 12 11 9 14 14 C 1.53040 * 109.24123 * 54.85650 * 13 12 11 15 15 C 1.53004 * 109.46045 * 178.49277 * 14 13 12 16 16 C 1.50697 * 109.47075 * 295.06779 * 15 14 13 17 17 H 1.07998 * 119.99992 * 359.97438 * 16 15 14 18 18 C 1.37868 * 119.99989 * 180.02562 * 16 15 14 19 19 N 1.31522 * 120.00079 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00176 * 0.02562 * 18 16 15 21 21 H 1.48489 * 109.47096 * 90.00021 * 20 18 16 22 22 H 1.48505 * 109.46971 * 210.00100 * 20 18 16 23 23 H 1.48503 * 109.46751 * 329.99668 * 20 18 16 24 24 C 1.53042 * 109.53727 * 298.51298 * 14 13 12 25 25 C 1.46927 * 120.62763 * 185.22532 * 11 9 8 26 26 C 1.52996 * 109.47014 * 60.00291 * 6 5 4 27 27 H 1.09000 * 109.47679 * 60.00117 * 26 6 5 28 28 C 1.53011 * 109.46801 * 180.02562 * 26 6 5 29 29 C 1.52997 * 109.47103 * 299.99671 * 26 6 5 30 30 H 1.08992 * 109.47367 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46395 * 300.00097 * 1 2 3 32 32 H 1.08996 * 109.47117 * 59.99182 * 1 2 3 33 33 H 1.08995 * 109.46739 * 59.99698 * 4 2 1 34 34 H 1.08990 * 109.47121 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.47081 * 60.00265 * 5 4 2 36 36 H 1.08997 * 109.46804 * 179.97438 * 5 4 2 37 37 H 0.96995 * 120.00204 * 264.99668 * 8 6 5 38 38 H 1.09000 * 109.58672 * 246.20390 * 12 11 9 39 39 H 1.08995 * 109.58693 * 6.62901 * 12 11 9 40 40 H 1.09000 * 109.63164 * 294.87105 * 13 12 11 41 41 H 1.08996 * 109.46218 * 174.74055 * 13 12 11 42 42 H 1.08996 * 109.46141 * 58.53277 * 14 13 12 43 43 H 1.08998 * 109.46867 * 55.06743 * 15 14 13 44 44 H 1.09006 * 109.46698 * 175.07052 * 15 14 13 45 45 H 0.97000 * 119.99892 * 180.02562 * 19 18 16 46 46 H 1.08997 * 109.49846 * 301.40868 * 24 14 13 47 47 H 1.09005 * 109.49639 * 181.31791 * 24 14 13 48 48 H 1.09002 * 109.58914 * 353.36748 * 25 11 9 49 49 H 1.08995 * 109.58911 * 113.79842 * 25 11 9 50 50 H 1.09000 * 109.47190 * 60.00354 * 28 26 6 51 51 H 1.09005 * 109.46585 * 179.97438 * 28 26 6 52 52 H 1.08996 * 109.46865 * 299.99447 * 28 26 6 53 53 H 1.09000 * 109.47212 * 300.00172 * 29 26 6 54 54 H 1.09001 * 109.47493 * 180.02562 * 29 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5299 -2.1638 -1.2492 6 6 2.0398 -2.8850 0.0000 7 1 3.1299 -2.8851 0.0000 8 7 1.5519 -4.2664 -0.0003 9 6 2.2291 -5.2202 -0.6699 10 8 3.1928 -4.9193 -1.3473 11 7 1.8379 -6.5073 -0.5884 12 6 0.6138 -6.8732 0.1372 13 6 -0.2807 -7.6995 -0.7994 14 6 0.5142 -8.8936 -1.3325 15 6 -0.3835 -9.7410 -2.2364 16 6 -1.5006 -10.3367 -1.4189 17 1 -1.5637 -10.1317 -0.3604 18 6 -2.4414 -11.1441 -2.0221 19 7 -3.4166 -11.6635 -1.3087 20 14 -2.3310 -11.5003 -3.8525 21 1 -1.5090 -12.7174 -4.0712 22 1 -3.6950 -11.7197 -4.3972 23 1 -1.7015 -10.3467 -4.5441 24 6 1.7166 -8.3909 -2.1348 25 6 2.6308 -7.5720 -1.2181 26 6 1.5299 -2.1638 1.2492 27 1 0.4399 -2.1637 1.2493 28 6 2.0405 -2.8848 2.4985 29 6 2.0400 -0.7213 1.2492 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.6766 -0.2074 -2.1392 34 1 3.1299 -0.7217 -1.2491 35 1 0.4399 -2.1637 -1.2492 36 1 1.8928 -2.6775 -2.1394 37 1 0.7415 -4.4946 0.4813 38 1 0.8726 -7.4646 1.0155 39 1 0.0873 -5.9697 0.4445 40 1 -0.6090 -7.0794 -1.6336 41 1 -1.1501 -8.0580 -0.2484 42 1 0.8633 -9.4998 -0.4966 43 1 -0.8033 -9.1135 -3.0226 44 1 0.2049 -10.5413 -2.6854 45 1 -4.0783 -12.2319 -1.7330 46 1 1.3695 -7.7644 -2.9564 47 1 2.2691 -9.2417 -2.5338 48 1 3.4356 -7.1296 -1.8053 49 1 3.0507 -8.2191 -0.4481 50 1 3.1305 -2.8844 2.4982 51 1 1.6775 -2.3706 3.3885 52 1 1.6774 -3.9125 2.4987 53 1 3.1300 -0.7214 1.2492 54 1 1.6771 -0.2076 2.1394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591936934.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:00 Heat of formation + Delta-G solvation = -81.863385 kcal Electronic energy + Delta-G solvation = -28814.245738 eV Core-core repulsion = 25169.560381 eV Total energy + Delta-G solvation = -3644.685356 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.69146 -40.24740 -38.66982 -35.77114 -35.59712 -34.08518 -33.49000 -32.13617 -31.19709 -30.10136 -27.54475 -27.20519 -26.05820 -24.24368 -23.70319 -22.80963 -22.08252 -21.31875 -20.62696 -19.68106 -18.95137 -18.69465 -17.50435 -16.51634 -16.36209 -16.32863 -15.80112 -15.67860 -15.38903 -15.24399 -14.94615 -14.81887 -14.64816 -14.39421 -14.17562 -14.06478 -13.87272 -13.64214 -13.44927 -13.14944 -13.01561 -12.86892 -12.86380 -12.67084 -12.41735 -12.25308 -12.16245 -11.99141 -11.95501 -11.75367 -11.73943 -11.41392 -11.30559 -11.27353 -11.12388 -10.99050 -10.91737 -10.89651 -10.70942 -10.09352 -9.41730 -8.25331 -6.26375 1.35110 1.37384 1.48114 1.69321 2.15818 2.37613 2.91414 3.10530 3.64503 3.75920 3.87151 3.93818 3.99391 4.04514 4.13289 4.20704 4.22263 4.36533 4.40604 4.43449 4.50154 4.52009 4.57526 4.64981 4.69813 4.76815 4.81635 4.86949 4.87932 4.94691 4.98651 5.01709 5.06613 5.11833 5.12754 5.17553 5.18681 5.23741 5.25658 5.28279 5.34892 5.40569 5.41217 5.44144 5.47717 5.60508 5.62940 5.69267 5.73998 5.75212 6.02685 6.34834 6.80988 6.98426 7.37571 7.58675 8.90754 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.019212 B = 0.002635 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.076615 B =10625.358662 C =10894.562417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 H 0.081 0.919 4 C -0.109 4.109 5 C -0.128 4.128 6 C 0.173 3.827 7 H 0.062 0.938 8 N -0.731 5.731 9 C 0.704 3.296 10 O -0.634 6.634 11 N -0.625 5.625 12 C 0.120 3.880 13 C -0.114 4.114 14 C -0.068 4.068 15 C -0.008 4.008 16 C -0.513 4.513 17 H 0.044 0.956 18 C 0.005 3.995 19 N -0.951 5.951 20 Si 0.940 3.060 21 H -0.269 1.269 22 H -0.288 1.288 23 H -0.253 1.253 24 C -0.123 4.123 25 C 0.135 3.865 26 C -0.092 4.092 27 H 0.087 0.913 28 C -0.145 4.145 29 C -0.102 4.102 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.036 0.964 37 H 0.404 0.596 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.049 0.951 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.010 0.990 44 H 0.014 0.986 45 H 0.263 0.737 46 H 0.050 0.950 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.078 0.922 50 H 0.046 0.954 51 H 0.071 0.929 52 H 0.051 0.949 53 H 0.062 0.938 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.979 24.061 6.260 27.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.108 4.108 3 H 0.099 0.901 4 C -0.147 4.147 5 C -0.167 4.167 6 C 0.068 3.932 7 H 0.080 0.920 8 N -0.388 5.388 9 C 0.406 3.594 10 O -0.516 6.516 11 N -0.362 5.362 12 C -0.003 4.003 13 C -0.153 4.153 14 C -0.086 4.086 15 C -0.045 4.045 16 C -0.551 4.551 17 H 0.063 0.937 18 C -0.192 4.192 19 N -0.592 5.592 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.214 1.214 23 H -0.177 1.177 24 C -0.161 4.161 25 C 0.012 3.988 26 C -0.111 4.111 27 H 0.105 0.895 28 C -0.202 4.202 29 C -0.140 4.140 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.243 0.757 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.028 0.972 44 H 0.032 0.968 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.099 0.901 48 H 0.099 0.901 49 H 0.096 0.904 50 H 0.066 0.934 51 H 0.090 0.910 52 H 0.070 0.930 53 H 0.080 0.920 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.536 24.169 5.790 27.400 hybrid contribution -0.826 -1.025 -0.810 1.546 sum 10.710 23.144 4.980 25.984 Atomic orbital electron populations 1.21941 0.94915 1.01986 1.01951 1.21121 0.96235 0.99421 0.94038 0.90095 1.21510 1.00403 0.94094 0.98679 1.21919 1.01220 0.96226 0.97293 1.20865 0.98281 0.78714 0.95377 0.92003 1.45329 1.29899 1.07991 1.55583 1.16005 0.82357 0.81038 0.80035 1.90845 1.32237 1.81758 1.46775 1.47374 1.26959 1.04738 1.57116 1.21828 0.84155 0.99860 0.94426 1.21850 0.98189 0.96159 0.99059 1.20899 0.94364 0.95623 0.97762 1.19590 0.94404 0.95001 0.95529 1.21449 1.09457 1.28171 0.96042 0.93737 1.25896 0.95005 0.95700 1.02550 1.70054 1.16047 1.35070 1.38071 0.85805 0.77342 0.79536 0.80823 1.19461 1.21366 1.17676 1.21957 0.96628 0.99548 0.97962 1.21450 0.93304 0.87823 0.96269 1.21409 1.01485 0.95367 0.92835 0.89455 1.21810 1.00886 1.00279 0.97261 1.21578 1.00686 0.93431 0.98342 0.92552 0.91853 0.92904 0.91513 0.92391 0.91112 0.94474 0.75722 0.90146 0.88749 0.93205 0.91462 0.92016 0.97184 0.96800 0.92768 0.93110 0.90093 0.90133 0.90400 0.93449 0.91049 0.92982 0.91971 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.50 71.98 0.61 -1.05 16 2 C -0.09 -1.03 3.20 -10.79 -0.03 -1.07 16 3 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 4 C -0.11 -1.68 5.45 30.60 0.17 -1.52 16 5 C -0.13 -2.54 5.22 30.59 0.16 -2.38 16 6 C 0.17 3.38 1.86 44.99 0.08 3.46 16 7 H 0.06 1.51 7.65 -2.39 -0.02 1.50 16 8 N -0.73 -15.93 4.29 -457.82 -1.97 -17.90 16 9 C 0.70 20.63 8.26 179.05 1.48 22.11 16 10 O -0.63 -23.30 15.43 -3.98 -0.06 -23.36 16 11 N -0.63 -17.25 2.97 -836.07 -2.48 -19.73 16 12 C 0.12 2.96 6.42 86.51 0.56 3.52 16 13 C -0.11 -3.76 5.21 30.82 0.16 -3.60 16 14 C -0.07 -2.45 2.10 -10.76 -0.02 -2.48 16 15 C -0.01 -0.36 3.52 29.85 0.10 -0.25 16 16 C -0.51 -28.24 8.94 25.60 0.23 -28.01 16 17 H 0.04 2.64 7.30 -2.91 -0.02 2.62 16 18 C 0.00 0.28 5.47 84.65 0.46 0.74 16 19 N -0.95 -58.65 13.96 21.45 0.30 -58.35 16 20 Si 0.94 44.33 27.47 68.60 1.88 46.21 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 23 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 24 C -0.12 -3.78 5.36 30.67 0.16 -3.61 16 25 C 0.13 3.77 6.44 86.36 0.56 4.32 16 26 C -0.09 -1.22 2.02 -10.79 -0.02 -1.24 16 27 H 0.09 1.04 6.43 -2.39 -0.02 1.03 16 28 C -0.15 -1.89 9.04 71.99 0.65 -1.24 16 29 C -0.10 -1.14 4.73 30.59 0.14 -0.99 16 30 H 0.06 0.69 4.81 -2.39 -0.01 0.67 16 31 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 1.31 6.43 -2.39 -0.02 1.30 16 36 H 0.04 0.97 8.10 -2.39 -0.02 0.95 16 37 H 0.40 7.08 5.88 -92.71 -0.54 6.54 16 38 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.09 1.81 5.64 -2.39 -0.01 1.80 16 40 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.07 2.50 6.91 -2.39 -0.02 2.49 16 42 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.01 0.46 7.20 -2.39 -0.02 0.44 16 44 H 0.01 0.62 7.57 -2.38 -0.02 0.60 16 45 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 46 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 48 H 0.08 2.40 7.00 -2.39 -0.02 2.38 16 49 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 50 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 52 H 0.05 0.73 7.45 -2.39 -0.02 0.72 16 53 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 54 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -68.90 395.39 3.38 -65.52 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.26 Total: 20.88 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: 5.45 Total: -13.27 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -4.15 Total: -95.98 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.06 Total: -23.36 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.21 kcal Total: -68.90 3.38 -65.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591936934.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.342 kcal (2) G-P(sol) polarization free energy of solvation -68.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds