Wall clock time and date at job start Tue Mar 31 2020 15:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47213 * 2 1 4 4 C 1.53004 * 109.46784 * 240.00373 * 2 1 3 5 5 C 1.53007 * 109.47013 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.46785 * 60.00528 * 5 4 2 7 7 C 1.53004 * 109.46913 * 299.99533 * 6 5 4 8 8 H 1.08996 * 109.47314 * 300.00149 * 7 6 5 9 9 C 1.52998 * 109.46913 * 180.02562 * 7 6 5 10 10 C 1.52997 * 109.47005 * 60.00597 * 7 6 5 11 11 H 1.08996 * 109.47450 * 59.99635 * 10 7 6 12 12 N 1.46498 * 109.47205 * 180.02562 * 10 7 6 13 13 C 1.34773 * 120.00135 * 204.99925 * 12 10 7 14 14 O 1.21589 * 120.00149 * 5.31663 * 13 12 10 15 15 N 1.34781 * 120.00294 * 185.31304 * 13 12 10 16 16 C 1.46921 * 120.63283 * 174.96679 * 15 13 12 17 17 C 1.53190 * 108.77951 * 233.63176 * 16 15 13 18 18 C 1.53039 * 109.31180 * 305.37113 * 17 16 15 19 19 C 1.52998 * 109.46007 * 181.38280 * 18 17 16 20 20 C 1.50697 * 109.47324 * 174.96720 * 19 18 17 21 21 H 1.08004 * 120.00185 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00192 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99984 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00057 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47211 * 90.00080 * 24 22 20 26 26 H 1.48505 * 109.47073 * 209.99858 * 24 22 20 27 27 H 1.48500 * 109.47322 * 329.99870 * 24 22 20 28 28 C 1.53029 * 109.53197 * 61.36547 * 18 17 16 29 29 C 1.46925 * 120.62755 * 354.99277 * 15 13 12 30 30 H 1.09010 * 109.46690 * 299.99482 * 1 2 3 31 31 H 1.09000 * 109.47530 * 59.99392 * 1 2 3 32 32 H 1.09000 * 109.47213 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47278 * 60.00420 * 4 2 1 34 34 H 1.08996 * 109.47314 * 300.00128 * 4 2 1 35 35 H 1.08996 * 109.47454 * 300.00372 * 5 4 2 36 36 H 1.09004 * 109.47038 * 179.97438 * 5 4 2 37 37 H 1.09005 * 109.47285 * 179.97438 * 6 5 4 38 38 H 1.09000 * 109.47712 * 59.99544 * 6 5 4 39 39 H 1.09000 * 109.47712 * 300.00011 * 9 7 6 40 40 H 1.09005 * 109.47285 * 60.00247 * 9 7 6 41 41 H 1.09002 * 109.47276 * 180.02562 * 9 7 6 42 42 H 0.97006 * 120.00338 * 24.99056 * 12 10 7 43 43 H 1.08998 * 109.58811 * 113.84405 * 16 15 13 44 44 H 1.09004 * 109.58762 * 353.42554 * 16 15 13 45 45 H 1.08998 * 109.50170 * 185.41392 * 17 16 15 46 46 H 1.09003 * 109.52057 * 65.33393 * 17 16 15 47 47 H 1.09000 * 109.45743 * 301.34827 * 18 17 16 48 48 H 1.08995 * 109.47613 * 294.97101 * 19 18 17 49 49 H 1.09009 * 109.47188 * 54.97255 * 19 18 17 50 50 H 0.96999 * 120.00077 * 179.97438 * 23 22 20 51 51 H 1.09005 * 109.49646 * 58.58379 * 28 18 17 52 52 H 1.09005 * 109.50243 * 178.67937 * 28 18 17 53 53 H 1.08995 * 109.58681 * 246.15656 * 29 15 13 54 54 H 1.08998 * 109.58605 * 6.43984 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2497 6 6 4.0804 -1.4418 -0.0006 7 6 3.5705 -0.7206 1.2487 8 1 3.9335 0.3072 1.2486 9 6 4.0815 -1.4413 2.4979 10 6 2.0405 -0.7211 1.2491 11 1 1.6775 -1.7488 1.2492 12 7 1.5522 -0.0300 2.4450 13 6 0.3305 -0.3160 2.9369 14 8 -0.3269 -1.2142 2.4477 15 7 -0.1626 0.3936 3.9713 16 6 -1.5341 0.1684 4.4475 17 6 -2.2760 1.5085 4.4662 18 6 -1.4794 2.5164 5.2978 19 6 -2.2344 3.8462 5.3473 20 6 -1.5139 4.7991 6.2659 21 1 -0.6081 4.4874 6.7648 22 6 -2.0108 6.0690 6.4693 23 7 -1.3822 6.9005 7.2714 24 14 -3.5777 6.6081 5.6070 25 1 -4.7491 6.2819 6.4593 26 1 -3.5322 8.0731 5.3679 27 1 -3.6974 5.8981 4.3083 28 6 -0.1055 2.7337 4.6599 29 6 0.6612 1.4075 4.6438 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6766 -0.2072 -2.1393 34 1 1.6765 -1.7488 -1.2494 35 1 3.9330 0.3071 -1.2498 36 1 3.9333 -1.2349 -2.1396 37 1 5.1705 -1.4418 -0.0010 38 1 3.7174 -2.4695 -0.0004 39 1 3.7188 -2.4692 2.4983 40 1 5.1715 -1.4406 2.4974 41 1 3.7179 -0.9278 3.3880 42 1 2.1083 0.6333 2.8830 43 1 -1.5075 -0.2486 5.4542 44 1 -2.0448 -0.5228 3.7770 45 1 -3.2631 1.3718 4.9078 46 1 -2.3817 1.8805 3.4471 47 1 -1.3532 2.1327 6.3102 48 1 -2.2833 4.2739 4.3460 49 1 -3.2448 3.6767 5.7198 50 1 -1.7316 7.7940 7.4142 51 1 -0.2313 3.0939 3.6388 52 1 0.4526 3.4692 5.2394 53 1 0.8668 1.0916 5.6665 54 1 1.5999 1.5322 4.1041 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591971042.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:54 Heat of formation + Delta-G solvation = -81.431463 kcal Electronic energy + Delta-G solvation = -29212.797186 eV Core-core repulsion = 25568.130559 eV Total energy + Delta-G solvation = -3644.666627 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.76956 -40.04803 -38.53364 -35.67926 -35.21221 -34.39686 -33.98849 -32.15991 -31.24196 -30.13131 -27.43896 -27.10820 -26.02981 -24.21516 -23.43632 -22.46960 -21.67833 -21.23919 -21.12247 -20.20891 -19.05179 -18.72381 -17.50211 -16.73432 -16.35844 -16.14294 -15.77959 -15.44829 -15.29211 -15.22558 -14.92295 -14.84413 -14.68347 -14.32651 -14.17630 -14.01489 -13.79387 -13.49647 -13.29899 -13.23627 -13.16942 -13.04237 -12.87558 -12.60741 -12.41120 -12.16931 -12.15255 -11.98944 -11.89533 -11.73570 -11.68481 -11.43208 -11.36146 -11.28656 -11.16735 -11.10206 -10.92260 -10.89681 -10.70939 -9.98603 -9.39315 -8.25314 -6.26427 1.35224 1.37386 1.48144 1.71645 2.22831 2.37643 2.93556 3.10568 3.60350 3.78718 3.86826 3.93407 3.99255 4.05659 4.12349 4.21052 4.21684 4.40456 4.41961 4.45019 4.48133 4.53366 4.55286 4.65571 4.72591 4.79767 4.82123 4.87068 4.88961 4.93146 4.95200 5.00200 5.02981 5.08217 5.16582 5.18574 5.23499 5.24850 5.27432 5.31818 5.33928 5.35852 5.39724 5.43582 5.45980 5.56944 5.61711 5.72170 5.74300 5.75879 6.06034 6.34845 6.80973 7.02120 7.37487 7.64317 8.90837 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.018601 B = 0.002829 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.910135 B = 9895.258747 C = 9921.592501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.109 4.109 5 C -0.118 4.118 6 C -0.108 4.108 7 C -0.092 4.092 8 H 0.084 0.916 9 C -0.144 4.144 10 C 0.175 3.825 11 H 0.065 0.935 12 N -0.732 5.732 13 C 0.707 3.293 14 O -0.625 6.625 15 N -0.627 5.627 16 C 0.136 3.864 17 C -0.122 4.122 18 C -0.068 4.068 19 C -0.007 4.007 20 C -0.514 4.514 21 H 0.043 0.957 22 C 0.005 3.995 23 N -0.951 5.951 24 Si 0.941 3.059 25 H -0.270 1.270 26 H -0.287 1.287 27 H -0.252 1.252 28 C -0.113 4.113 29 C 0.120 3.880 30 H 0.030 0.970 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.403 0.597 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.052 0.948 47 H 0.059 0.941 48 H 0.011 0.989 49 H 0.013 0.987 50 H 0.263 0.737 51 H 0.051 0.949 52 H 0.065 0.935 53 H 0.076 0.924 54 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.558 -17.584 -15.766 26.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.118 4.118 3 H 0.090 0.910 4 C -0.147 4.147 5 C -0.155 4.155 6 C -0.146 4.146 7 C -0.111 4.111 8 H 0.102 0.898 9 C -0.201 4.201 10 C 0.070 3.930 11 H 0.083 0.917 12 N -0.389 5.389 13 C 0.409 3.591 14 O -0.507 6.507 15 N -0.364 5.364 16 C 0.013 3.987 17 C -0.160 4.160 18 C -0.086 4.086 19 C -0.045 4.045 20 C -0.552 4.552 21 H 0.062 0.938 22 C -0.192 4.192 23 N -0.593 5.593 24 Si 0.765 3.235 25 H -0.195 1.195 26 H -0.213 1.213 27 H -0.176 1.176 28 C -0.151 4.151 29 C -0.003 4.003 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.241 0.759 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.029 0.971 49 H 0.031 0.969 50 H 0.072 0.928 51 H 0.069 0.931 52 H 0.084 0.916 53 H 0.095 0.905 54 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.079 -18.066 -16.050 26.585 hybrid contribution -0.776 1.256 0.443 1.541 sum 10.303 -16.810 -15.607 25.146 Atomic orbital electron populations 1.21710 0.96125 1.00916 0.99999 1.21536 0.94926 1.00024 0.95297 0.91002 1.21548 0.96438 1.00274 0.96450 1.21559 0.94392 1.01337 0.98234 1.21551 1.01220 0.99036 0.92750 1.21385 0.92051 1.01280 0.96420 0.89786 1.21794 1.01547 0.99995 0.96796 1.20916 0.93942 0.95580 0.82575 0.91707 1.45308 1.16551 1.45777 1.31286 1.15892 0.82122 0.81527 0.79529 1.90856 1.61086 1.34747 1.63973 1.47374 1.15198 1.39908 1.33893 1.21411 0.80678 0.96772 0.99815 1.21954 0.99285 0.94781 1.00001 1.20892 0.94956 0.94574 0.98222 1.19581 0.95568 0.93881 0.95420 1.21454 1.10165 0.97474 1.26075 0.93826 1.25900 1.00465 0.97012 0.95778 1.70053 1.42120 1.07675 1.39412 0.85800 0.80167 0.77216 0.80288 1.19503 1.21346 1.17605 1.21760 0.96468 0.96526 1.00386 1.21716 0.93440 0.87010 0.98121 0.95093 0.93066 0.93788 0.91376 0.92402 0.91388 0.90668 0.89997 0.92087 0.93487 0.91078 0.93076 0.75887 0.90827 0.90070 0.90176 0.92956 0.92222 0.97100 0.96854 0.92766 0.93053 0.91591 0.90532 0.88787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 7.79 71.98 0.56 -2.67 16 2 C -0.10 -1.88 2.43 -10.79 -0.03 -1.90 16 3 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 4 C -0.11 -1.63 5.20 30.60 0.16 -1.47 16 5 C -0.12 -1.31 5.92 30.60 0.18 -1.13 16 6 C -0.11 -1.19 5.20 30.59 0.16 -1.03 16 7 C -0.09 -1.24 2.30 -10.79 -0.02 -1.26 16 8 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 9 C -0.14 -1.92 9.04 71.98 0.65 -1.27 16 10 C 0.17 3.38 1.64 44.99 0.07 3.45 16 11 H 0.06 1.58 7.51 -2.39 -0.02 1.57 16 12 N -0.73 -15.77 4.19 -457.82 -1.92 -17.69 16 13 C 0.71 20.05 6.45 179.05 1.16 21.21 16 14 O -0.63 -21.69 13.33 -3.99 -0.05 -21.74 16 15 N -0.63 -17.12 2.97 -836.92 -2.49 -19.60 16 16 C 0.14 3.80 6.42 86.36 0.55 4.35 16 17 C -0.12 -3.72 5.36 30.67 0.16 -3.55 16 18 C -0.07 -2.45 2.10 -10.77 -0.02 -2.47 16 19 C -0.01 -0.32 3.52 29.85 0.10 -0.22 16 20 C -0.51 -28.27 8.94 25.60 0.23 -28.04 16 21 H 0.04 2.59 7.30 -2.91 -0.02 2.57 16 22 C 0.00 0.28 5.47 84.65 0.46 0.74 16 23 N -0.95 -58.67 13.96 21.45 0.30 -58.37 16 24 Si 0.94 44.23 27.47 68.60 1.88 46.11 16 25 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 26 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 27 H -0.25 -11.19 6.54 99.48 0.65 -10.53 16 28 C -0.11 -3.70 5.19 30.67 0.16 -3.54 16 29 C 0.12 2.98 6.43 86.36 0.56 3.54 16 30 H 0.03 0.91 5.86 -2.38 -0.01 0.90 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.04 1.23 7.63 -2.39 -0.02 1.21 16 33 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.05 0.74 7.45 -2.39 -0.02 0.72 16 42 H 0.40 7.14 5.85 -92.70 -0.54 6.60 16 43 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.08 2.39 7.03 -2.39 -0.02 2.37 16 45 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.01 0.49 7.20 -2.39 -0.02 0.48 16 49 H 0.01 0.59 7.57 -2.38 -0.02 0.57 16 50 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 51 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 52 H 0.07 2.46 6.91 -2.38 -0.02 2.44 16 53 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 54 H 0.09 1.82 5.56 -2.39 -0.01 1.81 16 Total: -1.00 -67.69 394.67 3.07 -64.61 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.25 Total: 21.96 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 5.10 Total: -15.27 kcal Atomic # 7 Polarization: -91.56 SS G_CDS: -4.10 Total: -95.66 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.05 Total: -21.74 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.88 Total: 46.11 kcal Total: -67.69 3.07 -64.61 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591971042.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.820 kcal (2) G-P(sol) polarization free energy of solvation -67.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds