Wall clock time and date at job start Tue Mar 31 2020 15:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47066 * 2 1 4 4 C 1.53005 * 109.46948 * 240.00442 * 2 1 3 5 5 C 1.52998 * 109.47054 * 299.99362 * 4 2 1 6 6 C 1.52994 * 109.47536 * 300.00533 * 5 4 2 7 7 C 1.53005 * 109.47385 * 59.99669 * 6 5 4 8 8 H 1.08996 * 109.46772 * 60.00097 * 7 6 5 9 9 C 1.52992 * 109.47222 * 180.02562 * 7 6 5 10 10 C 1.52992 * 109.47451 * 120.00225 * 2 1 3 11 11 N 1.46504 * 109.46943 * 299.99846 * 10 2 1 12 12 C 1.34768 * 120.00357 * 274.72178 * 11 10 2 13 13 O 1.21587 * 119.99731 * 355.28760 * 12 11 10 14 14 N 1.34776 * 120.00394 * 175.28606 * 12 11 10 15 15 C 1.46926 * 120.62780 * 4.94417 * 14 12 11 16 16 C 1.53627 * 108.54334 * 126.36794 * 15 14 12 17 17 C 1.53039 * 109.24113 * 54.85618 * 16 15 14 18 18 C 1.53001 * 109.46003 * 178.48795 * 17 16 15 19 19 C 1.50700 * 109.47198 * 295.06865 * 18 17 16 20 20 H 1.07995 * 120.00098 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99607 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99744 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 120.00434 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47608 * 89.99103 * 23 21 19 25 25 H 1.48492 * 109.47277 * 209.99946 * 23 21 19 26 26 H 1.48505 * 109.46874 * 329.99627 * 23 21 19 27 27 C 1.53034 * 109.53954 * 298.51423 * 17 16 15 28 28 C 1.46920 * 120.63386 * 185.22424 * 14 12 11 29 29 H 1.09000 * 109.47290 * 299.99756 * 1 2 3 30 30 H 1.08998 * 109.47616 * 59.99791 * 1 2 3 31 31 H 1.09002 * 109.47440 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46889 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47381 * 59.99968 * 4 2 1 34 34 H 1.08995 * 109.47238 * 179.97438 * 5 4 2 35 35 H 1.09004 * 109.47068 * 60.00360 * 5 4 2 36 36 H 1.09004 * 109.46801 * 299.99990 * 6 5 4 37 37 H 1.08993 * 109.47616 * 179.97438 * 6 5 4 38 38 H 1.09000 * 109.47413 * 180.02562 * 9 7 6 39 39 H 1.08999 * 109.47438 * 299.99519 * 9 7 6 40 40 H 1.08996 * 109.47450 * 60.00166 * 9 7 6 41 41 H 1.08996 * 109.47450 * 180.02562 * 10 2 1 42 42 H 0.97009 * 119.99708 * 95.00435 * 11 10 2 43 43 H 1.09003 * 109.58757 * 246.19984 * 15 14 12 44 44 H 1.08999 * 109.59120 * 6.62576 * 15 14 12 45 45 H 1.08998 * 109.63485 * 294.86744 * 16 15 14 46 46 H 1.09004 * 109.45786 * 174.74112 * 16 15 14 47 47 H 1.09005 * 109.44963 * 58.52669 * 17 16 15 48 48 H 1.09003 * 109.46822 * 55.06909 * 18 17 16 49 49 H 1.09004 * 109.46960 * 175.06602 * 18 17 16 50 50 H 0.97004 * 120.00369 * 180.02562 * 22 21 19 51 51 H 1.09005 * 109.49393 * 301.41000 * 27 17 16 52 52 H 1.09000 * 109.50010 * 181.31600 * 27 17 16 53 53 H 1.08997 * 109.58985 * 353.37327 * 28 14 12 54 54 H 1.08998 * 109.58880 * 113.65669 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5300 -2.1637 -1.2494 6 6 2.0400 -2.8850 -0.0002 7 6 1.5300 -2.1638 1.2492 8 1 0.4401 -2.1638 1.2491 9 6 2.0405 -2.8847 2.4983 10 6 2.0400 -0.7212 1.2491 11 7 1.5517 -0.0306 2.4453 12 6 2.2315 1.0226 2.9401 13 8 3.2941 1.3467 2.4460 14 7 1.7334 1.7168 3.9825 15 6 0.5067 1.2740 4.6590 16 6 0.7957 1.1495 6.1627 17 6 1.3544 2.4769 6.6804 18 6 1.6088 2.3705 8.1854 19 6 0.2980 2.1804 8.9042 20 1 -0.6243 2.1400 8.3438 21 6 0.2762 2.0581 10.2774 22 7 -0.8677 1.8928 10.9048 23 14 1.8714 2.1287 11.2468 24 1 2.1590 3.5356 11.6251 25 1 1.7418 1.3028 12.4740 26 1 2.9817 1.6039 10.4119 27 6 2.6681 2.7941 5.9624 28 6 2.4035 2.9340 4.4600 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 -0.7208 -1.2496 33 1 1.6766 -0.2073 -2.1393 34 1 1.8929 -2.6773 -2.1396 35 1 0.4400 -2.1638 -1.2493 36 1 3.1300 -2.8849 -0.0002 37 1 1.6764 -3.9125 0.0001 38 1 1.6769 -2.3712 3.3883 39 1 1.6775 -3.9125 2.4985 40 1 3.1305 -2.8843 2.4981 41 1 3.1300 -0.7208 1.2493 42 1 0.7413 -0.3341 2.8837 43 1 -0.2850 2.0052 4.4956 44 1 0.2001 0.3058 4.2631 45 1 1.5252 0.3573 6.3311 46 1 -0.1275 0.9124 6.6915 47 1 0.6347 3.2729 6.4892 48 1 2.2593 1.5188 8.3846 49 1 2.0877 3.2838 8.5384 50 1 -0.8831 1.8071 11.8709 51 1 3.3800 1.9863 6.1328 52 1 3.0774 3.7277 6.3482 53 1 3.3489 3.0615 3.9328 54 1 1.7644 3.7981 4.2784 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591971045.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:23 Heat of formation + Delta-G solvation = -80.179355 kcal Electronic energy + Delta-G solvation = -29057.906156 eV Core-core repulsion = 25413.293824 eV Total energy + Delta-G solvation = -3644.612331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.76561 -40.25636 -38.61319 -35.69720 -35.26656 -34.11006 -33.95928 -32.10903 -31.11437 -30.11806 -27.54986 -27.24598 -26.06959 -24.23057 -23.67574 -22.71612 -22.16134 -21.27657 -20.40757 -19.84290 -19.00187 -18.71220 -17.48585 -16.63021 -16.35183 -16.31700 -15.71409 -15.68027 -15.37260 -15.21059 -14.99059 -14.84685 -14.71221 -14.29188 -14.18760 -14.10848 -13.99301 -13.50552 -13.48225 -13.20194 -13.04838 -12.90459 -12.85256 -12.48721 -12.41465 -12.22877 -12.16468 -12.02348 -11.96530 -11.77452 -11.73059 -11.42597 -11.31707 -11.28878 -11.16494 -11.00201 -10.91373 -10.87183 -10.70936 -10.05554 -9.40847 -8.25253 -6.26255 1.35142 1.37437 1.48135 1.69863 2.16358 2.37660 2.92180 3.10602 3.62715 3.77592 3.87227 3.93424 3.99106 4.04579 4.16325 4.17881 4.20879 4.38434 4.39778 4.41623 4.50329 4.53418 4.56559 4.64719 4.69082 4.77724 4.80919 4.86543 4.88484 4.94797 4.99158 4.99836 5.04924 5.09235 5.13202 5.18565 5.22461 5.24116 5.27383 5.29843 5.34270 5.36419 5.40538 5.42410 5.48701 5.59918 5.61171 5.70722 5.74069 5.75340 6.02974 6.34910 6.81059 6.98830 7.37619 7.59312 8.90828 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.022113 B = 0.002707 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.921748 B =10342.086783 C =10732.509988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.042 0.958 4 C -0.110 4.110 5 C -0.118 4.118 6 C -0.108 4.108 7 C -0.092 4.092 8 H 0.092 0.908 9 C -0.147 4.147 10 C 0.174 3.826 11 N -0.728 5.728 12 C 0.705 3.295 13 O -0.636 6.636 14 N -0.625 5.625 15 C 0.120 3.880 16 C -0.114 4.114 17 C -0.068 4.068 18 C -0.008 4.008 19 C -0.513 4.513 20 H 0.044 0.956 21 C 0.005 3.995 22 N -0.951 5.951 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.288 1.288 26 H -0.253 1.253 27 C -0.122 4.122 28 C 0.135 3.865 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.043 0.957 41 H 0.058 0.942 42 H 0.404 0.596 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.050 0.950 46 H 0.067 0.933 47 H 0.061 0.939 48 H 0.010 0.990 49 H 0.013 0.987 50 H 0.263 0.737 51 H 0.051 0.949 52 H 0.080 0.920 53 H 0.080 0.920 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.421 -8.792 -25.347 27.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.061 0.939 4 C -0.148 4.148 5 C -0.155 4.155 6 C -0.146 4.146 7 C -0.111 4.111 8 H 0.110 0.890 9 C -0.204 4.204 10 C 0.069 3.931 11 N -0.384 5.384 12 C 0.406 3.594 13 O -0.518 6.518 14 N -0.362 5.362 15 C -0.002 4.002 16 C -0.152 4.152 17 C -0.086 4.086 18 C -0.045 4.045 19 C -0.551 4.551 20 H 0.063 0.937 21 C -0.191 4.191 22 N -0.592 5.592 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.214 1.214 26 H -0.177 1.177 27 C -0.161 4.161 28 C 0.012 3.988 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.243 0.757 43 H 0.098 0.902 44 H 0.112 0.888 45 H 0.069 0.931 46 H 0.085 0.915 47 H 0.079 0.921 48 H 0.028 0.972 49 H 0.032 0.968 50 H 0.072 0.928 51 H 0.069 0.931 52 H 0.099 0.901 53 H 0.098 0.902 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.100 -8.578 -25.545 27.257 hybrid contribution 0.188 0.211 1.507 1.534 sum 4.289 -8.367 -24.037 25.811 Atomic orbital electron populations 1.21858 0.93846 1.02734 1.01521 1.21423 0.97205 0.98434 0.94864 0.93918 1.21520 1.00214 0.96485 0.96612 1.21585 1.01601 0.94407 0.97926 1.21551 1.00693 0.99481 0.92907 1.21413 1.01653 0.91937 0.96095 0.89001 1.21819 1.00722 1.00844 0.97046 1.20874 0.98040 0.91371 0.82809 1.45275 1.29835 1.32244 1.31063 1.15993 0.83027 0.80358 0.80003 1.90843 1.24119 1.72131 1.64702 1.47364 1.28354 1.27934 1.32518 1.21822 0.85877 1.00778 0.91770 1.21848 1.01401 0.97373 0.94591 1.20896 0.96152 0.97280 0.94310 1.19588 0.95202 0.95851 0.93865 1.21448 0.93821 1.47953 0.91893 0.93746 1.25895 0.99175 0.94791 0.99284 1.70050 1.27451 1.52517 1.09204 0.85805 0.80910 0.78655 0.78142 1.19485 1.21357 1.17667 1.21951 0.97454 1.02094 0.94557 1.21436 0.98088 0.85586 0.93723 0.93505 0.92444 0.90571 0.92864 0.91135 0.90832 0.90613 0.92470 0.89977 0.93380 0.91022 0.93822 0.92404 0.75742 0.90233 0.88791 0.93146 0.91463 0.92062 0.97161 0.96819 0.92768 0.93066 0.90114 0.90198 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.34 71.98 0.60 -1.44 16 2 C -0.10 -1.79 2.88 -10.80 -0.03 -1.82 16 3 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 4 C -0.11 -1.57 5.45 30.60 0.17 -1.40 16 5 C -0.12 -1.22 5.65 30.59 0.17 -1.05 16 6 C -0.11 -1.23 5.20 30.59 0.16 -1.07 16 7 C -0.09 -1.27 2.02 -10.79 -0.02 -1.29 16 8 H 0.09 1.05 6.43 -2.39 -0.02 1.03 16 9 C -0.15 -2.28 9.03 71.98 0.65 -1.63 16 10 C 0.17 3.42 1.63 44.99 0.07 3.49 16 11 N -0.73 -15.85 3.53 -457.83 -1.61 -17.46 16 12 C 0.70 20.72 8.27 179.06 1.48 22.20 16 13 O -0.64 -23.53 15.39 -3.99 -0.06 -23.60 16 14 N -0.63 -17.32 2.97 -836.09 -2.48 -19.80 16 15 C 0.12 2.98 6.42 86.51 0.56 3.54 16 16 C -0.11 -3.74 5.21 30.82 0.16 -3.58 16 17 C -0.07 -2.45 2.10 -10.77 -0.02 -2.47 16 18 C -0.01 -0.35 3.52 29.85 0.10 -0.24 16 19 C -0.51 -28.23 8.94 25.60 0.23 -28.00 16 20 H 0.04 2.64 7.30 -2.91 -0.02 2.61 16 21 C 0.00 0.28 5.47 84.65 0.46 0.75 16 22 N -0.95 -58.61 13.96 21.45 0.30 -58.31 16 23 Si 0.94 44.31 27.47 68.60 1.88 46.20 16 24 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 25 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 26 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 27 C -0.12 -3.77 5.36 30.67 0.16 -3.61 16 28 C 0.13 3.80 6.44 86.36 0.56 4.35 16 29 H 0.05 0.74 7.60 -2.39 -0.02 0.73 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 0.84 4.81 -2.39 -0.01 0.83 16 32 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.08 0.67 6.43 -2.38 -0.02 0.66 16 36 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.05 0.83 7.45 -2.39 -0.02 0.82 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 1.49 7.50 -2.39 -0.02 1.48 16 42 H 0.40 7.14 5.87 -92.70 -0.54 6.60 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.09 1.82 5.64 -2.39 -0.01 1.80 16 45 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.07 2.50 6.91 -2.39 -0.02 2.49 16 47 H 0.06 2.25 8.14 -2.38 -0.02 2.24 16 48 H 0.01 0.47 7.20 -2.39 -0.02 0.45 16 49 H 0.01 0.61 7.57 -2.38 -0.02 0.59 16 50 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 51 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 52 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 53 H 0.08 2.40 7.00 -2.39 -0.02 2.38 16 54 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -69.10 394.13 3.75 -65.36 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.26 Total: 20.89 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: 5.46 Total: -13.27 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -3.79 Total: -95.57 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.06 Total: -23.60 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.88 Total: 46.20 kcal Total: -69.10 3.75 -65.36 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591971045.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.823 kcal (2) G-P(sol) polarization free energy of solvation -69.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds