Wall clock time and date at job start Tue Mar 31 2020 15:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46751 * 2 1 4 4 C 1.52998 * 109.47292 * 240.00412 * 2 1 3 5 5 C 1.52994 * 109.47224 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.46963 * 60.00362 * 5 4 2 7 7 H 1.08994 * 109.47178 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47582 * 59.99555 * 6 5 4 9 9 C 1.34775 * 119.99834 * 84.99940 * 8 6 5 10 10 O 1.21585 * 119.99921 * 354.93952 * 9 8 6 11 11 N 1.34773 * 120.00062 * 174.93636 * 9 8 6 12 12 C 1.46927 * 120.63503 * 184.75875 * 11 9 8 13 13 C 1.53618 * 108.54674 * 126.36205 * 12 11 9 14 14 C 1.53038 * 109.24080 * 54.86208 * 13 12 11 15 15 C 1.53000 * 109.46106 * 178.48844 * 14 13 12 16 16 C 1.50694 * 109.47213 * 295.06498 * 15 14 13 17 17 H 1.08002 * 120.00309 * 0.02562 * 16 15 14 18 18 C 1.37883 * 120.00152 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99766 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99896 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47129 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46990 * 120.00451 * 20 18 16 23 23 H 1.48504 * 109.47210 * 239.99929 * 20 18 16 24 24 C 1.53044 * 109.53500 * 298.50805 * 14 13 12 25 25 C 1.46931 * 120.63123 * 5.02987 * 11 9 8 26 26 C 1.53010 * 109.46742 * 299.99645 * 6 5 4 27 27 C 1.52997 * 109.47075 * 119.99933 * 2 1 3 28 28 H 1.09002 * 109.47010 * 60.00869 * 27 2 1 29 29 C 1.53001 * 109.47276 * 300.00054 * 27 2 1 30 30 H 1.09002 * 109.47208 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47242 * 299.99689 * 1 2 3 32 32 H 1.08998 * 109.47302 * 60.00191 * 1 2 3 33 33 H 1.09002 * 109.46881 * 300.00062 * 4 2 1 34 34 H 1.09009 * 109.47042 * 59.99661 * 4 2 1 35 35 H 1.09001 * 109.47174 * 179.97438 * 5 4 2 36 36 H 1.08992 * 109.47665 * 300.00108 * 5 4 2 37 37 H 0.97003 * 120.00175 * 265.00266 * 8 6 5 38 38 H 1.08998 * 109.58507 * 246.19987 * 12 11 9 39 39 H 1.09003 * 109.58215 * 6.62115 * 12 11 9 40 40 H 1.09000 * 109.64119 * 294.86617 * 13 12 11 41 41 H 1.09008 * 109.45843 * 174.73908 * 13 12 11 42 42 H 1.08994 * 109.46542 * 58.52697 * 14 13 12 43 43 H 1.09003 * 109.47377 * 55.06874 * 15 14 13 44 44 H 1.08999 * 109.46929 * 175.06430 * 15 14 13 45 45 H 0.96998 * 119.99855 * 179.97438 * 19 18 16 46 46 H 1.09001 * 109.50000 * 301.41018 * 24 14 13 47 47 H 1.09009 * 109.52367 * 181.33352 * 24 14 13 48 48 H 1.08997 * 109.58685 * 353.37796 * 25 11 9 49 49 H 1.09003 * 109.58060 * 113.80083 * 25 11 9 50 50 H 1.08997 * 109.46646 * 179.97438 * 26 6 5 51 51 H 1.09002 * 109.47121 * 300.00342 * 26 6 5 52 52 H 1.08999 * 109.46948 * 60.00717 * 29 27 2 53 53 H 1.09001 * 109.47023 * 179.97438 * 29 27 2 54 54 H 1.08992 * 109.47248 * 300.00359 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4416 -0.0004 7 1 5.1704 -1.4409 -0.0003 8 7 3.5926 -2.8230 -0.0001 9 6 4.2696 -3.7768 -0.6697 10 8 5.2321 -3.4759 -1.3488 11 7 3.8796 -5.0642 -0.5864 12 6 4.6669 -6.1278 -1.2249 13 6 4.9911 -7.1962 -0.1698 14 6 3.6901 -7.6790 0.4754 15 6 4.0039 -8.7705 1.5006 16 6 4.5714 -9.9748 0.7945 17 1 4.6962 -9.9628 -0.2782 18 6 4.9323 -11.0916 1.5181 19 7 4.7808 -11.1061 2.8244 20 14 5.6351 -12.5847 0.6427 21 1 5.7029 -12.3166 -0.8163 22 1 6.9996 -12.8639 1.1581 23 1 4.7623 -13.7602 0.8905 24 6 2.9995 -6.5059 1.1747 25 6 2.6558 -5.4303 0.1396 26 6 3.5704 -0.7204 1.2490 27 6 2.0400 -0.7212 1.2492 28 1 1.6767 -1.7489 1.2491 29 6 1.5300 0.0000 2.4985 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6767 -1.7488 -1.2493 34 1 1.6766 -0.2072 -2.1393 35 1 3.9333 -1.2347 -2.1394 36 1 3.9330 0.3071 -1.2497 37 1 2.7823 -3.0511 0.4819 38 1 4.0897 -6.5735 -2.0349 39 1 5.5928 -5.7098 -1.6202 40 1 5.6404 -6.7705 0.5953 41 1 5.4943 -8.0371 -0.6472 42 1 3.0312 -8.0822 -0.2936 43 1 4.7315 -8.3948 2.2201 44 1 3.0894 -9.0527 2.0223 45 1 5.0344 -11.8919 3.3334 46 1 3.6675 -6.0866 1.9271 47 1 2.0849 -6.8549 1.6542 48 1 2.2542 -4.5520 0.6450 49 1 1.9179 -5.8203 -0.5615 50 1 3.9337 -1.2343 2.1389 51 1 3.9334 0.3074 1.2488 52 1 0.4400 -0.0001 2.4985 53 1 1.8929 -0.5141 3.3885 54 1 1.8932 1.0276 2.4985 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592010574.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:34 Heat of formation + Delta-G solvation = -84.510869 kcal Electronic energy + Delta-G solvation = -28855.958184 eV Core-core repulsion = 25211.158024 eV Total energy + Delta-G solvation = -3644.800160 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.72767 -40.14209 -38.62500 -35.72889 -35.58623 -34.01797 -33.09242 -32.39125 -31.49142 -29.66551 -28.05270 -26.48220 -26.19132 -24.18661 -23.67732 -22.75161 -22.00344 -21.51749 -20.63077 -19.89223 -19.13198 -18.38002 -17.20933 -16.67113 -16.54717 -16.10817 -15.83143 -15.49172 -15.30962 -15.14160 -14.95180 -14.80870 -14.64907 -14.46103 -14.25880 -13.93607 -13.76185 -13.46653 -13.22745 -13.03428 -12.90935 -12.72255 -12.65497 -12.62547 -12.52046 -12.41318 -12.31932 -12.25608 -12.09665 -11.82858 -11.76277 -11.34545 -11.31363 -11.24244 -11.03445 -10.96472 -10.84745 -10.76575 -10.52258 -10.10638 -9.41115 -8.16950 -6.25520 1.39483 1.40936 1.52971 1.69506 2.17586 2.42333 2.93885 3.16919 3.74829 3.77166 3.78262 3.91864 4.00723 4.07996 4.11017 4.21326 4.22624 4.42432 4.43568 4.47712 4.51816 4.55068 4.67190 4.68340 4.70099 4.80670 4.82679 4.87041 4.90137 4.97558 4.99192 5.04666 5.06551 5.12234 5.15284 5.18960 5.25265 5.31007 5.32527 5.33209 5.34050 5.39358 5.48028 5.55528 5.58768 5.61790 5.64267 5.70092 5.82156 5.90975 6.02838 6.30726 6.91400 7.00210 7.42966 7.59183 8.95046 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.022989 B = 0.002562 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.666755 B =10927.506816 C =11467.363095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 H 0.076 0.924 4 C -0.107 4.107 5 C -0.126 4.126 6 C 0.162 3.838 7 H 0.061 0.939 8 N -0.727 5.727 9 C 0.702 3.298 10 O -0.636 6.636 11 N -0.626 5.626 12 C 0.137 3.863 13 C -0.109 4.109 14 C -0.072 4.072 15 C 0.034 3.966 16 C -0.527 4.527 17 H 0.062 0.938 18 C -0.002 4.002 19 N -0.936 5.936 20 Si 0.957 3.043 21 H -0.261 1.261 22 H -0.283 1.283 23 H -0.280 1.280 24 C -0.123 4.123 25 C 0.120 3.880 26 C -0.115 4.115 27 C -0.085 4.085 28 H 0.064 0.936 29 C -0.147 4.147 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.404 0.596 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.067 0.933 42 H 0.063 0.937 43 H -0.017 1.017 44 H -0.008 1.008 45 H 0.261 0.739 46 H 0.049 0.951 47 H 0.081 0.919 48 H 0.096 0.904 49 H 0.085 0.915 50 H 0.067 0.933 51 H 0.092 0.908 52 H 0.064 0.936 53 H 0.053 0.947 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.230 25.590 -4.400 27.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 H 0.095 0.905 4 C -0.145 4.145 5 C -0.164 4.164 6 C 0.057 3.943 7 H 0.079 0.921 8 N -0.385 5.385 9 C 0.404 3.596 10 O -0.518 6.518 11 N -0.363 5.363 12 C 0.014 3.986 13 C -0.148 4.148 14 C -0.091 4.091 15 C -0.004 4.004 16 C -0.565 4.565 17 H 0.081 0.919 18 C -0.200 4.200 19 N -0.577 5.577 20 Si 0.782 3.218 21 H -0.185 1.185 22 H -0.209 1.209 23 H -0.205 1.205 24 C -0.161 4.161 25 C -0.002 4.002 26 C -0.153 4.153 27 C -0.103 4.103 28 H 0.082 0.918 29 C -0.204 4.204 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.243 0.757 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.057 0.943 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.002 0.998 44 H 0.011 0.989 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.100 0.900 48 H 0.114 0.886 49 H 0.103 0.897 50 H 0.086 0.914 51 H 0.110 0.890 52 H 0.083 0.917 53 H 0.072 0.928 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.521 25.718 -4.723 27.828 hybrid contribution 0.448 -1.520 0.185 1.596 sum -9.073 24.198 -4.538 26.238 Atomic orbital electron populations 1.21882 0.94702 1.01872 1.02107 1.21136 0.95832 0.99544 0.93403 0.90521 1.21505 0.94219 1.00442 0.98296 1.21867 0.96839 1.00642 0.97098 1.20846 0.98008 0.79268 0.96168 0.92073 1.45344 1.30024 1.07835 1.55334 1.16049 0.82255 0.81124 0.80193 1.90846 1.32135 1.81844 1.46975 1.47371 1.27552 1.04562 1.56796 1.21513 0.95920 0.86601 0.94556 1.21834 0.97780 0.97427 0.97710 1.21020 0.95852 0.94611 0.97581 1.19013 0.94449 0.93028 0.93862 1.21712 1.40817 0.99809 0.94140 0.91945 1.25924 0.96516 1.02002 0.95509 1.70101 1.49892 1.30470 1.07201 0.85513 0.77838 0.79190 0.79221 1.18486 1.20914 1.20535 1.21930 1.00993 0.95496 0.97721 1.21758 0.85687 0.98442 0.94330 1.21882 0.96228 1.01417 0.95754 1.21145 0.94089 0.99651 0.95453 0.91759 1.21862 1.01557 1.00551 0.96430 0.92996 0.91597 0.92702 0.92930 0.91797 0.94119 0.89917 0.75669 0.90574 0.90708 0.94267 0.91465 0.91848 0.99840 0.98921 0.93034 0.93170 0.90041 0.88555 0.89716 0.91398 0.88954 0.91734 0.92828 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.84 71.98 0.64 -0.80 16 2 C -0.08 -0.87 2.25 -10.80 -0.02 -0.90 16 3 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 4 C -0.11 -1.54 5.04 30.59 0.15 -1.39 16 5 C -0.13 -2.26 5.60 30.59 0.17 -2.09 16 6 C 0.16 3.15 2.74 45.00 0.12 3.27 16 7 H 0.06 1.50 7.66 -2.39 -0.02 1.48 16 8 N -0.73 -15.92 4.15 -457.81 -1.90 -17.82 16 9 C 0.70 21.30 8.26 179.06 1.48 22.78 16 10 O -0.64 -24.35 15.44 -3.98 -0.06 -24.41 16 11 N -0.63 -18.06 2.97 -836.08 -2.48 -20.54 16 12 C 0.14 4.38 6.45 86.51 0.56 4.94 16 13 C -0.11 -4.08 5.21 30.81 0.16 -3.92 16 14 C -0.07 -2.77 2.10 -10.77 -0.02 -2.79 16 15 C 0.03 1.71 4.45 29.85 0.13 1.84 16 16 C -0.53 -29.17 8.39 25.60 0.21 -28.96 16 17 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 18 C 0.00 -0.14 5.46 84.66 0.46 0.33 16 19 N -0.94 -56.89 13.29 21.45 0.28 -56.61 16 20 Si 0.96 44.33 29.54 68.60 2.03 46.35 16 21 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 22 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 24 C -0.12 -3.70 5.36 30.67 0.16 -3.54 16 25 C 0.12 2.78 6.43 86.36 0.56 3.34 16 26 C -0.11 -1.52 4.89 30.61 0.15 -1.37 16 27 C -0.08 -0.93 2.08 -10.78 -0.02 -0.96 16 28 H 0.06 0.75 6.51 -2.39 -0.02 0.74 16 29 C -0.15 -1.36 8.84 71.98 0.64 -0.73 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.54 6.43 -2.39 -0.02 0.53 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.05 0.86 7.61 -2.39 -0.02 0.85 16 34 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.04 0.98 8.09 -2.39 -0.02 0.96 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.40 7.03 4.32 -92.71 -0.40 6.63 16 38 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.07 2.57 7.03 -2.39 -0.02 2.55 16 40 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.07 2.70 6.91 -2.38 -0.02 2.68 16 42 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 43 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 44 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 45 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 46 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 48 H 0.10 1.64 5.57 -2.39 -0.01 1.62 16 49 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.09 0.99 8.14 -2.39 -0.02 0.98 16 52 H 0.06 0.54 6.43 -2.39 -0.02 0.53 16 53 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 54 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -69.72 399.41 3.85 -65.87 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.45 Total: 18.11 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 5.53 Total: -10.94 kcal Atomic # 7 Polarization: -90.88 SS G_CDS: -4.09 Total: -94.97 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.06 Total: -24.41 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -69.72 3.85 -65.87 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592010574.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.645 kcal (2) G-P(sol) polarization free energy of solvation -69.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds