Wall clock time and date at job start Tue Mar 31 2020 15:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47001 * 2 1 4 4 C 1.53001 * 109.47212 * 239.99981 * 2 1 3 5 5 C 1.52992 * 109.47181 * 179.97438 * 4 2 1 6 6 C 1.53007 * 109.47245 * 59.99917 * 5 4 2 7 7 H 1.09002 * 109.46780 * 59.99946 * 6 5 4 8 8 N 1.46494 * 109.47365 * 179.97438 * 6 5 4 9 9 C 1.34771 * 120.00356 * 275.00195 * 8 6 5 10 10 O 1.21591 * 120.00248 * 5.06803 * 9 8 6 11 11 N 1.34773 * 120.00277 * 185.06778 * 9 8 6 12 12 C 1.46931 * 120.62942 * 354.96431 * 11 9 8 13 13 C 1.53195 * 108.77325 * 126.37108 * 12 11 9 14 14 C 1.53039 * 109.31407 * 54.63491 * 13 12 11 15 15 C 1.53000 * 109.44551 * 178.61861 * 14 13 12 16 16 C 1.50700 * 109.47551 * 295.06172 * 15 14 13 17 17 H 1.08004 * 119.99475 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00230 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00093 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99998 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47009 * 90.00206 * 20 18 16 22 22 H 1.48494 * 109.47086 * 210.00405 * 20 18 16 23 23 H 1.48505 * 109.47133 * 330.00448 * 20 18 16 24 24 C 1.53037 * 109.53728 * 298.63510 * 14 13 12 25 25 C 1.46927 * 120.63450 * 174.94347 * 11 9 8 26 26 C 1.53001 * 109.47099 * 300.00133 * 6 5 4 27 27 C 1.53004 * 109.47048 * 120.00020 * 2 1 3 28 28 H 1.08994 * 109.47094 * 60.00404 * 27 2 1 29 29 C 1.53001 * 109.47083 * 300.00041 * 27 2 1 30 30 H 1.09002 * 109.47001 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47246 * 299.99712 * 1 2 3 32 32 H 1.08999 * 109.47121 * 60.00061 * 1 2 3 33 33 H 1.08999 * 109.47112 * 59.99952 * 4 2 1 34 34 H 1.09002 * 109.47153 * 299.99926 * 4 2 1 35 35 H 1.09002 * 109.47275 * 300.00167 * 5 4 2 36 36 H 1.09000 * 109.47516 * 179.97438 * 5 4 2 37 37 H 0.97001 * 119.99760 * 94.99997 * 8 6 5 38 38 H 1.09001 * 109.58572 * 246.15754 * 12 11 9 39 39 H 1.08993 * 109.58399 * 6.58216 * 12 11 9 40 40 H 1.09001 * 109.49622 * 174.58857 * 13 12 11 41 41 H 1.08998 * 109.49554 * 294.68296 * 13 12 11 42 42 H 1.09003 * 109.46075 * 58.65881 * 14 13 12 43 43 H 1.08998 * 109.47363 * 55.06424 * 15 14 13 44 44 H 1.09002 * 109.46638 * 175.06253 * 15 14 13 45 45 H 0.96996 * 119.99949 * 180.02562 * 19 18 16 46 46 H 1.08998 * 109.49591 * 301.41229 * 24 14 13 47 47 H 1.09003 * 109.52228 * 181.33380 * 24 14 13 48 48 H 1.08999 * 109.58422 * 353.41583 * 25 11 9 49 49 H 1.08998 * 109.59091 * 113.69970 * 25 11 9 50 50 H 1.08999 * 109.47112 * 179.97438 * 26 6 5 51 51 H 1.08991 * 109.47268 * 300.00102 * 26 6 5 52 52 H 1.08999 * 109.47338 * 59.99854 * 29 27 2 53 53 H 1.08994 * 109.47063 * 180.02562 * 29 27 2 54 54 H 1.09002 * 109.47153 * 300.00133 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2496 6 6 4.0806 -1.4416 -0.0003 7 1 3.7176 -2.4694 -0.0001 8 7 5.5455 -1.4416 -0.0008 9 6 6.2192 -2.3978 -0.6703 10 8 5.6146 -3.2056 -1.3488 11 7 7.5630 -2.4588 -0.5876 12 6 8.3160 -1.4263 0.1375 13 6 9.2156 -2.1082 1.1732 14 6 10.0914 -3.1509 0.4747 15 6 11.0155 -3.8096 1.5009 16 6 11.9739 -2.7825 2.0463 17 1 11.9287 -1.7619 1.6957 18 6 12.9092 -3.1457 2.9920 19 7 13.7452 -2.2492 3.4683 20 14 12.9878 -4.9110 3.5978 21 1 13.9184 -5.6878 2.7400 22 1 13.4738 -4.9317 5.0008 23 1 11.6335 -5.5170 3.5341 24 6 9.2025 -4.2171 -0.1695 25 6 8.3028 -3.5592 -1.2205 26 6 3.5705 -0.7203 1.2490 27 6 2.0400 -0.7213 1.2493 28 1 1.6768 -1.7489 1.2492 29 6 1.5300 0.0000 2.4985 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6767 -0.2074 -2.1392 34 1 1.6767 -1.7489 -1.2492 35 1 3.9330 0.3071 -1.2498 36 1 3.9334 -1.2349 -2.1393 37 1 6.0307 -0.7533 0.4806 38 1 8.9297 -0.8612 -0.5641 39 1 7.6218 -0.7545 0.6422 40 1 9.8498 -1.3619 1.6517 41 1 8.5975 -2.5975 1.9259 42 1 10.6912 -2.6647 -0.2947 43 1 10.4195 -4.2195 2.3163 44 1 11.5767 -4.6120 1.0220 45 1 14.4034 -2.5049 4.1333 46 1 8.5846 -4.6866 0.5959 47 1 9.8271 -4.9723 -0.6467 48 1 7.5999 -4.2946 -1.6117 49 1 8.9136 -3.1685 -2.0344 50 1 3.9339 -1.2341 2.1390 51 1 3.9334 0.3074 1.2488 52 1 0.4400 0.0000 2.4985 53 1 1.8937 -0.5136 3.3884 54 1 1.8933 1.0277 2.4985 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592010575.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:37 Heat of formation + Delta-G solvation = -85.670034 kcal Electronic energy + Delta-G solvation = -28343.989478 eV Core-core repulsion = 24699.139053 eV Total energy + Delta-G solvation = -3644.850425 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.61791 -40.10719 -38.72246 -35.92987 -35.66244 -34.10171 -33.14011 -32.42755 -31.49479 -30.16545 -28.04347 -26.54494 -25.77072 -24.21830 -23.32980 -22.86665 -21.95331 -21.29882 -20.85735 -20.19782 -19.13781 -18.74802 -17.39081 -16.53499 -16.35675 -16.18287 -15.56565 -15.55967 -15.29394 -15.24532 -15.12983 -15.01014 -14.87360 -14.34037 -14.28341 -14.16782 -13.72194 -13.54191 -13.40347 -13.06730 -12.95453 -12.88036 -12.67542 -12.64059 -12.45913 -12.38949 -12.16135 -11.99995 -11.88543 -11.83471 -11.73378 -11.51477 -11.33193 -11.28118 -11.13746 -11.02153 -10.91582 -10.89923 -10.70667 -10.13136 -9.43720 -8.24938 -6.26027 1.35614 1.37782 1.48511 1.66780 2.14466 2.37949 2.88837 3.10849 3.67672 3.74546 3.87836 3.94463 3.99018 4.04435 4.07770 4.16924 4.20608 4.39224 4.41174 4.44636 4.51447 4.52530 4.60630 4.65134 4.73546 4.74647 4.80313 4.87502 4.88810 4.93894 4.95340 5.00124 5.06319 5.11201 5.13829 5.17875 5.18860 5.23048 5.24039 5.29079 5.31020 5.35675 5.42605 5.45436 5.55083 5.60416 5.63175 5.66369 5.74072 5.75326 6.01302 6.35155 6.81344 6.96852 7.37799 7.56563 8.91120 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.020456 B = 0.002446 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.477089 B =11442.659172 C =12167.706376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.076 0.924 4 C -0.108 4.108 5 C -0.123 4.123 6 C 0.165 3.835 7 H 0.059 0.941 8 N -0.735 5.735 9 C 0.704 3.296 10 O -0.634 6.634 11 N -0.626 5.626 12 C 0.119 3.881 13 C -0.114 4.114 14 C -0.069 4.069 15 C -0.008 4.008 16 C -0.513 4.513 17 H 0.044 0.956 18 C 0.004 3.996 19 N -0.951 5.951 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.288 1.288 23 H -0.252 1.252 24 C -0.122 4.122 25 C 0.135 3.865 26 C -0.115 4.115 27 C -0.080 4.080 28 H 0.064 0.936 29 C -0.146 4.146 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.041 0.959 37 H 0.406 0.594 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.011 0.989 44 H 0.014 0.986 45 H 0.263 0.737 46 H 0.053 0.947 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.075 0.925 50 H 0.067 0.933 51 H 0.081 0.919 52 H 0.066 0.934 53 H 0.052 0.948 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.322 5.757 -6.634 27.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.102 4.102 3 H 0.095 0.905 4 C -0.146 4.146 5 C -0.162 4.162 6 C 0.060 3.940 7 H 0.077 0.923 8 N -0.392 5.392 9 C 0.405 3.595 10 O -0.516 6.516 11 N -0.362 5.362 12 C -0.003 4.003 13 C -0.152 4.152 14 C -0.087 4.087 15 C -0.045 4.045 16 C -0.551 4.551 17 H 0.062 0.938 18 C -0.193 4.193 19 N -0.592 5.592 20 Si 0.766 3.234 21 H -0.195 1.195 22 H -0.214 1.214 23 H -0.176 1.176 24 C -0.160 4.160 25 C 0.012 3.988 26 C -0.153 4.153 27 C -0.099 4.099 28 H 0.083 0.917 29 C -0.203 4.203 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.244 0.756 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.030 0.970 44 H 0.032 0.968 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.100 0.900 48 H 0.099 0.901 49 H 0.094 0.906 50 H 0.086 0.914 51 H 0.100 0.900 52 H 0.085 0.915 53 H 0.072 0.928 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -26.622 5.194 -6.984 28.009 hybrid contribution 1.144 -0.495 0.718 1.439 sum -25.478 4.699 -6.266 26.655 Atomic orbital electron populations 1.21876 0.94485 1.01877 1.02263 1.21172 0.96083 0.99531 0.93412 0.90546 1.21531 0.93706 1.00746 0.98598 1.21863 0.96634 1.00553 0.97124 1.20844 0.77439 0.99638 0.96031 0.92271 1.45359 1.07360 1.30887 1.55553 1.16013 0.81609 0.81737 0.80113 1.90847 1.68333 1.45507 1.46885 1.47385 1.03930 1.27967 1.56914 1.21755 0.94855 0.89421 0.94315 1.21775 0.97287 0.98822 0.97346 1.20906 0.95168 0.95668 0.97007 1.19588 0.94460 0.95496 0.94965 1.21451 1.15224 0.96663 1.21778 0.93805 1.25911 0.95235 1.01394 0.96717 1.70052 1.21513 1.36123 1.31548 0.85794 0.79493 0.80716 0.77432 1.19520 1.21382 1.17567 1.21957 0.97677 0.98169 0.98242 1.21442 0.94125 0.88586 0.94670 1.21849 0.96382 1.01233 0.95815 1.21085 0.93362 0.99927 0.95567 0.91733 1.21857 1.01612 1.00512 0.96335 0.93012 0.91559 0.92422 0.91081 0.92657 0.91019 0.93991 0.75585 0.90384 0.88591 0.91448 0.92933 0.92157 0.97040 0.96795 0.92781 0.92857 0.90032 0.90143 0.90647 0.91438 0.90033 0.91528 0.92844 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.84 71.98 0.64 -0.82 16 2 C -0.08 -0.97 2.25 -10.79 -0.02 -1.00 16 3 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 4 C -0.11 -1.59 5.20 30.59 0.16 -1.43 16 5 C -0.12 -2.28 5.49 30.59 0.17 -2.11 16 6 C 0.17 3.29 2.42 45.00 0.11 3.40 16 7 H 0.06 1.50 7.65 -2.39 -0.02 1.48 16 8 N -0.73 -16.29 4.99 -457.82 -2.28 -18.57 16 9 C 0.70 20.78 8.26 179.06 1.48 22.26 16 10 O -0.63 -23.29 15.45 -4.00 -0.06 -23.35 16 11 N -0.63 -17.36 2.97 -836.91 -2.49 -19.85 16 12 C 0.12 2.96 6.43 86.36 0.56 3.51 16 13 C -0.11 -3.71 5.19 30.67 0.16 -3.55 16 14 C -0.07 -2.48 2.10 -10.77 -0.02 -2.50 16 15 C -0.01 -0.35 3.52 29.85 0.10 -0.24 16 16 C -0.51 -28.15 8.94 25.60 0.23 -27.92 16 17 H 0.04 2.60 7.30 -2.91 -0.02 2.58 16 18 C 0.00 0.22 5.47 84.65 0.46 0.68 16 19 N -0.95 -58.54 13.96 21.45 0.30 -58.24 16 20 Si 0.94 44.13 27.47 68.60 1.88 46.01 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 23 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 24 C -0.12 -3.72 5.36 30.67 0.16 -3.55 16 25 C 0.13 3.79 6.42 86.36 0.55 4.34 16 26 C -0.11 -1.64 4.68 30.61 0.14 -1.50 16 27 C -0.08 -1.00 2.25 -10.78 -0.02 -1.03 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 C -0.15 -1.49 8.84 71.98 0.64 -0.85 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.55 6.43 -2.39 -0.02 0.54 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.04 1.02 8.09 -2.39 -0.02 1.00 16 37 H 0.41 7.13 6.06 -92.71 -0.56 6.57 16 38 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 39 H 0.10 1.83 5.56 -2.39 -0.01 1.82 16 40 H 0.07 2.49 6.91 -2.39 -0.02 2.47 16 41 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.01 0.52 7.20 -2.39 -0.02 0.50 16 44 H 0.01 0.61 7.57 -2.39 -0.02 0.60 16 45 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 46 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 48 H 0.08 2.39 7.03 -2.39 -0.02 2.38 16 49 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.07 0.59 6.43 -2.39 -0.02 0.58 16 53 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 54 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -68.65 400.21 3.07 -65.58 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.23 Total: 20.74 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 5.49 Total: -12.31 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -4.47 Total: -96.67 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.06 Total: -23.35 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.01 kcal Total: -68.65 3.07 -65.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592010575.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.091 kcal (2) G-P(sol) polarization free energy of solvation -68.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds