Wall clock time and date at job start Tue Mar 31 2020 15:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46948 * 2 1 4 4 C 1.52995 * 109.47550 * 239.99822 * 2 1 3 5 5 C 1.53000 * 109.47550 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46880 * 60.00034 * 5 4 2 7 7 H 1.08998 * 109.47466 * 59.99851 * 6 5 4 8 8 N 1.46504 * 109.47028 * 180.02562 * 6 5 4 9 9 C 1.34780 * 119.99603 * 274.99558 * 8 6 5 10 10 O 1.21580 * 120.00282 * 355.01063 * 9 8 6 11 11 N 1.34772 * 119.99436 * 175.00775 * 9 8 6 12 12 C 1.46928 * 120.63478 * 4.94573 * 11 9 8 13 13 C 1.53625 * 108.54521 * 126.36660 * 12 11 9 14 14 C 1.53039 * 109.23987 * 54.85616 * 13 12 11 15 15 C 1.53000 * 109.46031 * 178.48872 * 14 13 12 16 16 C 1.50696 * 109.47454 * 295.07165 * 15 14 13 17 17 H 1.07999 * 119.99868 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00318 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00467 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99965 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47045 * 90.00259 * 20 18 16 22 22 H 1.48496 * 109.47298 * 210.00522 * 20 18 16 23 23 H 1.48503 * 109.47032 * 330.00297 * 20 18 16 24 24 C 1.53040 * 109.54232 * 298.51025 * 14 13 12 25 25 C 1.46932 * 120.63056 * 185.22373 * 11 9 8 26 26 C 1.53005 * 109.47004 * 299.99908 * 6 5 4 27 27 C 1.52997 * 109.46873 * 60.00297 * 26 6 5 28 28 H 1.08998 * 109.47016 * 179.97438 * 27 26 6 29 29 C 1.53000 * 109.47024 * 59.99952 * 27 26 6 30 30 H 1.08998 * 109.47369 * 300.00231 * 1 2 3 31 31 H 1.09002 * 109.47078 * 60.00413 * 1 2 3 32 32 H 1.09002 * 109.46948 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47140 * 300.00061 * 4 2 1 34 34 H 1.09002 * 109.47122 * 59.99792 * 4 2 1 35 35 H 1.09002 * 109.46948 * 300.00178 * 5 4 2 36 36 H 1.08998 * 109.47369 * 179.97438 * 5 4 2 37 37 H 0.96998 * 119.99974 * 95.00029 * 8 6 5 38 38 H 1.08997 * 109.58510 * 246.19894 * 12 11 9 39 39 H 1.08995 * 109.58784 * 6.62560 * 12 11 9 40 40 H 1.09004 * 109.63378 * 294.86715 * 13 12 11 41 41 H 1.09000 * 109.43011 * 174.72429 * 13 12 11 42 42 H 1.09003 * 109.46247 * 58.52938 * 14 13 12 43 43 H 1.09004 * 109.46766 * 55.07245 * 15 14 13 44 44 H 1.09005 * 109.47298 * 175.06601 * 15 14 13 45 45 H 0.96995 * 120.00620 * 179.97438 * 19 18 16 46 46 H 1.08997 * 109.49504 * 301.42073 * 24 14 13 47 47 H 1.09000 * 109.50139 * 181.31372 * 24 14 13 48 48 H 1.08999 * 109.58292 * 353.37311 * 25 11 9 49 49 H 1.08997 * 109.58884 * 113.79676 * 25 11 9 50 50 H 1.09002 * 109.47125 * 180.02562 * 26 6 5 51 51 H 1.08998 * 109.46962 * 300.00252 * 26 6 5 52 52 H 1.09002 * 109.47573 * 60.00169 * 29 27 26 53 53 H 1.09004 * 109.46929 * 179.97438 * 29 27 26 54 54 H 1.08998 * 109.47148 * 299.99825 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4415 -0.0002 7 1 3.7176 -2.4693 0.0001 8 7 5.5456 -1.4405 -0.0002 9 6 6.2201 -2.3963 -0.6696 10 8 5.6163 -3.3101 -1.1973 11 7 7.5640 -2.3388 -0.7540 12 6 8.3159 -1.3031 -0.0325 13 6 9.3937 -1.9875 0.8218 14 6 10.2556 -2.8802 -0.0739 15 6 11.3544 -3.5353 0.7653 16 6 12.2872 -2.4737 1.2886 17 1 12.1139 -1.4356 1.0465 18 6 13.3624 -2.8277 2.0757 19 7 14.1768 -1.9013 2.5319 20 14 13.6626 -4.6234 2.4940 21 1 14.5364 -5.2332 1.4596 22 1 14.3244 -4.7189 3.8199 23 1 12.3657 -5.3457 2.5349 24 6 9.3821 -3.9658 -0.7070 25 6 8.3046 -3.3071 -1.5742 26 6 3.5705 -0.7202 1.2490 27 6 2.0406 -0.7208 1.2493 28 1 1.6772 -0.2073 2.1394 29 6 1.5311 -2.1635 1.2497 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6768 -1.7489 -1.2491 34 1 1.6768 -0.2075 -2.1392 35 1 3.9330 0.3071 -1.2497 36 1 3.9335 -1.2349 -2.1392 37 1 6.0301 -0.7520 0.4817 38 1 8.7864 -0.6283 -0.7475 39 1 7.6389 -0.7420 0.6116 40 1 8.9192 -2.5951 1.5924 41 1 10.0206 -1.2290 1.2906 42 1 10.7101 -2.2761 -0.8591 43 1 10.9033 -4.0676 1.6028 44 1 11.9136 -4.2378 0.1473 45 1 14.9330 -2.1503 3.0859 46 1 8.9077 -4.5546 0.0779 47 1 10.0007 -4.6153 -1.3264 48 1 7.6201 -4.0688 -1.9476 49 1 8.7742 -2.7924 -2.4124 50 1 3.9346 -1.2335 2.1391 51 1 3.9335 0.3076 1.2487 52 1 1.8948 -2.6771 2.1397 53 1 0.4411 -2.1639 1.2503 54 1 1.8945 -2.6774 0.3597 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592010576.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:41 Heat of formation + Delta-G solvation = -81.929973 kcal Electronic energy + Delta-G solvation = -28486.235133 eV Core-core repulsion = 24841.546889 eV Total energy + Delta-G solvation = -3644.688244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.65605 -40.30962 -38.73097 -35.87803 -35.65280 -34.08365 -32.66015 -32.42825 -31.47798 -30.16640 -28.28532 -26.63518 -25.80140 -24.22321 -23.43889 -23.20574 -22.18871 -21.32859 -20.61741 -19.56814 -18.90195 -18.66571 -17.62801 -16.56504 -16.52185 -16.34469 -15.82015 -15.40911 -15.26534 -15.20664 -14.95531 -14.89107 -14.72456 -14.35532 -14.21563 -14.14302 -14.04562 -13.50045 -13.41700 -13.30203 -13.05053 -12.88268 -12.76068 -12.57247 -12.41943 -12.31081 -12.16613 -12.00281 -11.97456 -11.77454 -11.65190 -11.46223 -11.31320 -11.21593 -11.10325 -11.00763 -10.91445 -10.83333 -10.70961 -10.12150 -9.43208 -8.25237 -6.26292 1.35183 1.37438 1.48185 1.68543 2.14125 2.37621 2.90682 3.10466 3.67060 3.76141 3.88044 3.93973 3.99571 4.04568 4.14892 4.19692 4.22019 4.39633 4.40281 4.42811 4.45644 4.51577 4.56940 4.65062 4.73556 4.76798 4.80733 4.83506 4.87845 4.94479 4.97772 5.03461 5.07937 5.10237 5.11067 5.18508 5.20143 5.22629 5.24096 5.27174 5.33135 5.35720 5.42423 5.47386 5.51470 5.60477 5.66474 5.68062 5.73796 5.75061 6.02159 6.34834 6.81006 6.97438 7.37515 7.57343 8.90778 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.024841 B = 0.002370 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.909433 B =11813.383714 C =12154.230275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.077 0.923 4 C -0.109 4.109 5 C -0.123 4.123 6 C 0.161 3.839 7 H 0.066 0.934 8 N -0.735 5.735 9 C 0.704 3.296 10 O -0.635 6.635 11 N -0.626 5.626 12 C 0.119 3.881 13 C -0.114 4.114 14 C -0.069 4.069 15 C -0.008 4.008 16 C -0.513 4.513 17 H 0.044 0.956 18 C 0.004 3.996 19 N -0.951 5.951 20 Si 0.941 3.059 21 H -0.269 1.269 22 H -0.287 1.287 23 H -0.253 1.253 24 C -0.123 4.123 25 C 0.134 3.866 26 C -0.117 4.117 27 C -0.077 4.077 28 H 0.087 0.913 29 C -0.156 4.156 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.039 0.961 37 H 0.405 0.595 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.050 0.950 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.010 0.990 44 H 0.014 0.986 45 H 0.263 0.737 46 H 0.051 0.949 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.078 0.922 50 H 0.067 0.933 51 H 0.082 0.918 52 H 0.050 0.950 53 H 0.067 0.933 54 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.505 4.745 -5.178 28.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.095 0.905 4 C -0.147 4.147 5 C -0.162 4.162 6 C 0.056 3.944 7 H 0.084 0.916 8 N -0.392 5.392 9 C 0.405 3.595 10 O -0.517 6.517 11 N -0.362 5.362 12 C -0.003 4.003 13 C -0.153 4.153 14 C -0.087 4.087 15 C -0.045 4.045 16 C -0.551 4.551 17 H 0.062 0.938 18 C -0.192 4.192 19 N -0.592 5.592 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.214 1.214 23 H -0.177 1.177 24 C -0.161 4.161 25 C 0.011 3.989 26 C -0.155 4.155 27 C -0.096 4.096 28 H 0.105 0.895 29 C -0.213 4.213 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.244 0.756 38 H 0.098 0.902 39 H 0.114 0.886 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.029 0.971 44 H 0.032 0.968 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.099 0.901 48 H 0.099 0.901 49 H 0.096 0.904 50 H 0.086 0.914 51 H 0.101 0.899 52 H 0.069 0.931 53 H 0.086 0.914 54 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -27.792 4.124 -5.461 28.623 hybrid contribution 1.274 -0.494 0.621 1.501 sum -26.519 3.630 -4.840 27.200 Atomic orbital electron populations 1.21868 0.94476 1.02081 1.02072 1.21150 0.96086 0.99357 0.93673 0.90506 1.21570 0.93622 1.01027 0.98524 1.21868 0.96741 1.00598 0.96973 1.20927 0.77321 1.00159 0.95985 0.91562 1.45374 1.07448 1.30780 1.55566 1.16017 0.81647 0.82362 0.79458 1.90840 1.68453 1.37436 1.54967 1.47390 1.03869 1.33804 1.51142 1.21840 0.93853 0.89380 0.95255 1.21853 0.96407 0.99403 0.97592 1.20906 0.94540 0.96136 0.97137 1.19591 0.94231 0.95494 0.95224 1.21447 1.09409 0.94457 1.29788 0.93756 1.25908 0.95896 1.01547 0.95897 1.70047 1.16911 1.35159 1.37087 0.85799 0.79172 0.80902 0.77591 1.19468 1.21355 1.17670 1.21958 0.96820 0.97975 0.99347 1.21456 0.93143 0.91699 0.92581 1.21828 0.96515 1.01212 0.95960 1.21064 0.93254 0.96521 0.98789 0.89492 1.22025 1.01684 0.96232 1.01396 0.91990 0.92495 0.92496 0.92254 0.91247 0.90996 0.94177 0.75627 0.90189 0.88616 0.93131 0.91441 0.92035 0.97147 0.96776 0.92770 0.93044 0.90060 0.90119 0.90419 0.91444 0.89937 0.93131 0.91377 0.93323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.84 71.98 0.64 -0.75 16 2 C -0.08 -0.93 2.49 -10.79 -0.03 -0.96 16 3 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 4 C -0.11 -1.57 4.93 30.59 0.15 -1.42 16 5 C -0.12 -2.23 5.49 30.59 0.17 -2.06 16 6 C 0.16 3.15 2.22 44.99 0.10 3.25 16 7 H 0.07 1.66 5.80 -2.39 -0.01 1.65 16 8 N -0.73 -16.18 4.99 -457.80 -2.28 -18.47 16 9 C 0.70 20.80 8.26 179.05 1.48 22.28 16 10 O -0.63 -23.46 15.39 -3.97 -0.06 -23.52 16 11 N -0.63 -17.38 2.97 -836.06 -2.48 -19.85 16 12 C 0.12 2.96 6.42 86.51 0.56 3.51 16 13 C -0.11 -3.76 5.21 30.82 0.16 -3.60 16 14 C -0.07 -2.48 2.10 -10.77 -0.02 -2.50 16 15 C -0.01 -0.36 3.52 29.85 0.10 -0.26 16 16 C -0.51 -28.24 8.94 25.60 0.23 -28.01 16 17 H 0.04 2.63 7.30 -2.91 -0.02 2.61 16 18 C 0.00 0.23 5.47 84.65 0.46 0.69 16 19 N -0.95 -58.62 13.96 21.45 0.30 -58.32 16 20 Si 0.94 44.32 27.47 68.60 1.88 46.21 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 23 H -0.25 -11.26 6.54 99.48 0.65 -10.61 16 24 C -0.12 -3.78 5.36 30.67 0.16 -3.61 16 25 C 0.13 3.77 6.44 86.36 0.56 4.33 16 26 C -0.12 -1.62 4.92 30.60 0.15 -1.47 16 27 C -0.08 -0.91 2.72 -10.79 -0.03 -0.94 16 28 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 29 C -0.16 -2.13 8.15 71.98 0.59 -1.55 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.56 6.43 -2.39 -0.02 0.54 16 33 H 0.06 0.96 6.43 -2.39 -0.02 0.94 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.41 7.04 6.09 -92.71 -0.56 6.48 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.10 1.83 5.64 -2.39 -0.01 1.82 16 40 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 41 H 0.07 2.51 6.91 -2.39 -0.02 2.49 16 42 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.01 0.47 7.20 -2.38 -0.02 0.46 16 44 H 0.01 0.63 7.57 -2.38 -0.02 0.61 16 45 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 46 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 48 H 0.08 2.41 7.00 -2.39 -0.02 2.39 16 49 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 51 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 52 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 53 H 0.07 0.78 6.43 -2.38 -0.02 0.76 16 54 H 0.05 0.82 4.81 -2.39 -0.01 0.81 16 Total: -1.00 -69.10 393.19 3.03 -66.07 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.24 Total: 20.95 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 5.43 Total: -13.07 kcal Atomic # 7 Polarization: -92.18 SS G_CDS: -4.46 Total: -96.64 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.06 Total: -23.52 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.88 Total: 46.21 kcal Total: -69.10 3.03 -66.07 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592010576.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.861 kcal (2) G-P(sol) polarization free energy of solvation -69.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds