Wall clock time and date at job start Tue Mar 31 2020 15:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08988 * 109.59102 * 2 1 4 4 C 1.53194 * 109.70201 * 239.63806 * 2 1 3 5 5 C 1.53035 * 109.31459 * 185.50997 * 4 2 1 6 6 C 1.53041 * 109.53553 * 61.36839 * 5 4 2 7 7 C 1.53192 * 109.31694 * 298.63213 * 6 5 4 8 8 H 1.08996 * 109.58909 * 294.84981 * 7 6 5 9 9 C 1.52999 * 109.58884 * 174.42010 * 7 6 5 10 10 N 1.46934 * 109.58203 * 120.28653 * 2 1 3 11 11 C 1.34771 * 120.63446 * 353.51214 * 10 2 1 12 12 O 1.21286 * 119.99861 * 21.53692 * 11 10 2 13 13 C 1.50695 * 120.00252 * 201.54240 * 11 10 2 14 14 N 1.46904 * 109.47507 * 170.09219 * 13 11 10 15 15 C 1.46850 * 110.99797 * 294.20918 * 14 13 11 16 16 C 1.53035 * 109.52235 * 174.15585 * 15 14 13 17 17 C 1.53117 * 109.27578 * 59.17983 * 16 15 14 18 18 C 1.52999 * 109.52217 * 182.43907 * 17 16 15 19 19 C 1.50694 * 109.47427 * 294.68390 * 18 17 16 20 20 H 1.08004 * 119.99666 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00040 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00417 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99961 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47047 * 90.00065 * 23 21 19 25 25 H 1.48494 * 109.47426 * 210.00176 * 23 21 19 26 26 H 1.48505 * 109.46885 * 330.00656 * 23 21 19 27 27 C 1.53121 * 109.16451 * 302.34489 * 17 16 15 28 28 C 1.46839 * 111.00265 * 169.99794 * 14 13 11 29 29 H 1.09001 * 109.47076 * 299.06567 * 1 2 3 30 30 H 1.09002 * 109.47048 * 59.06045 * 1 2 3 31 31 H 1.08998 * 109.47681 * 179.06650 * 1 2 3 32 32 H 1.08995 * 109.50125 * 305.46863 * 4 2 1 33 33 H 1.09008 * 109.49315 * 65.53228 * 4 2 1 34 34 H 1.08998 * 109.46832 * 181.39041 * 5 4 2 35 35 H 1.09004 * 109.46299 * 301.35077 * 5 4 2 36 36 H 1.09004 * 109.49804 * 178.68160 * 6 5 4 37 37 H 1.08998 * 109.49790 * 58.59034 * 6 5 4 38 38 H 1.09004 * 109.47224 * 291.26621 * 9 7 6 39 39 H 1.08995 * 109.46844 * 51.26808 * 9 7 6 40 40 H 1.08999 * 109.46883 * 171.27142 * 9 7 6 41 41 H 1.09000 * 109.47011 * 290.09251 * 13 11 10 42 42 H 1.09003 * 109.47322 * 50.09086 * 13 11 10 43 43 H 1.08997 * 109.46277 * 294.17475 * 15 14 13 44 44 H 1.09001 * 109.46004 * 54.14775 * 15 14 13 45 45 H 1.09006 * 109.50142 * 299.24288 * 16 15 14 46 46 H 1.08995 * 109.54023 * 179.14167 * 16 15 14 47 47 H 1.08999 * 109.57667 * 62.28376 * 17 16 15 48 48 H 1.09002 * 109.46825 * 54.68811 * 18 17 16 49 49 H 1.09004 * 109.47146 * 174.68583 * 18 17 16 50 50 H 0.96999 * 120.00163 * 180.02562 * 22 21 19 51 51 H 1.08994 * 109.50378 * 297.71434 * 27 17 16 52 52 H 1.08995 * 109.50565 * 177.59493 * 27 17 16 53 53 H 1.09005 * 109.46396 * 305.85848 * 28 14 13 54 54 H 1.09009 * 109.45985 * 65.83636 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0268 0.0000 4 6 2.0465 -0.7290 -1.2444 5 6 3.5705 -0.8446 -1.1674 6 6 3.9600 -1.6610 0.0671 7 6 3.4654 -0.9427 1.3265 8 1 3.9886 0.0073 1.4347 9 6 3.7277 -1.8187 2.5531 10 7 2.0224 -0.6982 1.1954 11 6 1.1671 -1.1061 2.1537 12 8 -0.0067 -1.2634 1.8918 13 6 1.6689 -1.3666 3.5505 14 7 0.5263 -1.5649 4.4524 15 6 -0.2613 -0.3323 4.5827 16 6 -1.5185 -0.6137 5.4087 17 6 -1.1099 -1.1291 6.7914 18 6 -2.3628 -1.4699 7.6007 19 6 -3.1460 -0.2106 7.8682 20 1 -2.7863 0.7380 7.4976 21 6 -4.3223 -0.2694 8.5851 22 7 -4.7606 -1.4245 9.0360 23 14 -5.2928 1.2918 8.9173 24 1 -6.2648 1.5140 7.8168 25 1 -6.0232 1.1565 10.2031 26 1 -4.3617 2.4461 8.9959 27 6 -0.2504 -2.3855 6.6258 28 6 0.9700 -2.0527 5.7644 29 1 -0.3633 0.4993 0.8982 30 1 -0.3633 0.5284 -0.8815 31 1 -0.3634 -1.0275 -0.0167 32 1 1.6078 -1.7258 -1.2905 33 1 1.7684 -0.1676 -2.1365 34 1 3.9429 -1.3410 -2.0634 35 1 4.0071 0.1517 -1.0964 36 1 5.0445 -1.7628 0.1086 37 1 3.5035 -2.6490 0.0087 38 1 3.0799 -2.6946 2.5193 39 1 4.7700 -2.1374 2.5556 40 1 3.5201 -1.2479 3.4583 41 1 2.2922 -2.2608 3.5518 42 1 2.2564 -0.5138 3.8905 43 1 0.3374 0.4303 5.0807 44 1 -0.5489 0.0212 3.5925 45 1 -2.1244 -1.3664 4.9042 46 1 -2.0956 0.3044 5.5184 47 1 -0.5372 -0.3621 7.3125 48 1 -2.9805 -2.1691 7.0370 49 1 -2.0713 -1.9244 8.5476 50 1 -5.5883 -1.4659 9.5400 51 1 -0.8364 -3.1659 6.1405 52 1 0.0791 -2.7327 7.6050 53 1 1.5767 -2.9487 5.6326 54 1 1.5627 -1.2819 6.2570 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592135864.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:32 Heat of formation + Delta-G solvation = -18.653334 kcal Electronic energy + Delta-G solvation = -29205.891116 eV Core-core repulsion = 25563.946753 eV Total energy + Delta-G solvation = -3641.944363 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.95792 -39.89801 -38.32371 -36.51035 -35.28513 -33.98941 -33.70897 -31.70366 -30.65579 -29.88506 -28.44704 -26.74191 -25.56401 -24.02213 -23.73471 -22.54058 -22.19112 -21.85935 -20.45081 -20.00888 -18.43677 -17.72187 -17.40473 -16.69039 -16.63093 -16.39832 -15.69275 -15.45377 -15.23163 -15.11249 -14.92825 -14.86832 -14.77080 -14.44822 -14.09583 -14.00881 -13.84231 -13.60076 -13.37725 -13.21383 -12.94385 -12.91613 -12.81026 -12.67708 -12.56325 -12.36121 -12.24774 -12.06419 -11.96215 -11.72864 -11.69457 -11.63473 -11.47530 -11.25207 -11.13646 -10.91775 -10.66660 -10.53509 -10.12973 -9.40930 -9.10891 -8.18038 -6.27655 1.37265 1.39254 1.49764 1.64073 1.97070 2.40692 3.01811 3.14737 3.53627 3.80049 3.84954 3.93190 3.98637 4.03907 4.05766 4.11582 4.22386 4.26630 4.32013 4.35731 4.38980 4.49951 4.55896 4.61048 4.65767 4.69888 4.73264 4.77152 4.83589 4.85320 4.88841 4.96495 5.00057 5.06815 5.09806 5.12871 5.15312 5.19387 5.23595 5.24684 5.36935 5.38470 5.42724 5.43568 5.51155 5.57053 5.77767 5.81282 5.88757 6.11570 6.20731 6.29872 6.57640 6.88222 7.33409 7.40335 8.94017 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.022895 B = 0.002696 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.698917 B =10383.188141 C =11203.833324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.144 3.856 3 H 0.083 0.917 4 C -0.127 4.127 5 C -0.117 4.117 6 C -0.127 4.127 7 C 0.137 3.863 8 H 0.090 0.910 9 C -0.196 4.196 10 N -0.620 5.620 11 C 0.513 3.487 12 O -0.547 6.547 13 C 0.008 3.992 14 N -0.544 5.544 15 C 0.072 3.928 16 C -0.090 4.090 17 C -0.072 4.072 18 C 0.034 3.966 19 C -0.530 4.530 20 H 0.058 0.942 21 C -0.003 4.003 22 N -0.935 5.935 23 Si 0.961 3.039 24 H -0.276 1.276 25 H -0.281 1.281 26 H -0.262 1.262 27 C -0.108 4.108 28 C 0.070 3.930 29 H 0.036 0.964 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.159 0.841 42 H 0.080 0.920 43 H 0.032 0.968 44 H 0.063 0.937 45 H 0.036 0.964 46 H 0.049 0.951 47 H 0.053 0.947 48 H -0.018 1.018 49 H -0.010 1.010 50 H 0.262 0.738 51 H 0.048 0.952 52 H 0.069 0.931 53 H 0.098 0.902 54 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.851 1.731 -20.556 33.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.041 3.959 3 H 0.101 0.899 4 C -0.165 4.165 5 C -0.155 4.155 6 C -0.165 4.165 7 C 0.035 3.965 8 H 0.108 0.892 9 C -0.253 4.253 10 N -0.357 5.357 11 C 0.302 3.698 12 O -0.424 6.424 13 C -0.120 4.120 14 N -0.270 5.270 15 C -0.056 4.056 16 C -0.128 4.128 17 C -0.091 4.091 18 C -0.003 4.003 19 C -0.568 4.568 20 H 0.076 0.924 21 C -0.201 4.201 22 N -0.576 5.576 23 Si 0.786 3.214 24 H -0.201 1.201 25 H -0.206 1.206 26 H -0.186 1.186 27 C -0.146 4.146 28 C -0.057 4.057 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.176 0.824 42 H 0.097 0.903 43 H 0.050 0.950 44 H 0.082 0.918 45 H 0.055 0.945 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.001 0.999 49 H 0.009 0.991 50 H 0.071 0.929 51 H 0.067 0.933 52 H 0.088 0.912 53 H 0.117 0.883 54 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 24.792 1.217 -20.797 32.383 hybrid contribution -1.034 1.085 0.745 1.674 sum 23.758 2.302 -20.052 31.174 Atomic orbital electron populations 1.22055 0.94640 1.02241 1.00287 1.21294 0.94100 0.95678 0.84795 0.89928 1.21960 0.97141 1.00413 0.97009 1.21523 0.94258 1.01241 0.98434 1.21984 1.02276 0.98673 0.93577 1.21422 0.78855 0.99777 0.96429 0.89165 1.23260 1.04159 0.99815 0.98020 1.48377 1.07878 1.59154 1.20331 1.20941 0.85701 0.75866 0.87310 1.90745 1.19781 1.49646 1.82213 1.24050 0.92788 1.05524 0.89676 1.61612 1.22072 1.31181 1.12125 1.21957 0.94356 0.90261 0.99023 1.21343 0.96526 0.99952 0.94936 1.21076 0.96141 0.96831 0.95052 1.19003 0.92657 0.95180 0.93456 1.21649 1.07043 0.94775 1.33324 0.92365 1.25974 0.98875 0.99447 0.95760 1.70106 1.22678 1.26529 1.38307 0.85510 0.78685 0.79669 0.77586 1.20136 1.20596 1.18624 1.21608 0.96498 0.97257 0.99237 1.22055 0.95886 1.00355 0.87410 0.94523 0.92073 0.92846 0.93248 0.89783 0.90632 0.90613 0.88333 0.92708 0.91735 0.88500 0.89156 0.82399 0.90279 0.95009 0.91813 0.94494 0.93190 0.92902 0.99942 0.99141 0.92921 0.93322 0.91204 0.88332 0.93824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 7.63 71.98 0.55 -2.70 16 2 C 0.14 2.56 3.49 44.97 0.16 2.72 16 3 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 4 C -0.13 -1.71 5.38 30.67 0.16 -1.55 16 5 C -0.12 -1.02 5.88 30.62 0.18 -0.84 16 6 C -0.13 -1.09 5.36 30.67 0.16 -0.92 16 7 C 0.14 1.46 3.46 44.97 0.16 1.61 16 8 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 9 C -0.20 -1.65 7.07 71.98 0.51 -1.14 16 10 N -0.62 -11.44 2.97 -771.32 -2.29 -13.73 16 11 C 0.51 13.07 6.30 87.66 0.55 13.62 16 12 O -0.55 -19.09 10.73 -3.05 -0.03 -19.12 16 13 C 0.01 0.18 3.08 85.55 0.26 0.44 16 14 N -0.54 -16.31 4.34 -900.92 -3.91 -20.22 16 15 C 0.07 2.49 5.13 86.32 0.44 2.94 16 16 C -0.09 -3.85 5.15 30.65 0.16 -3.69 16 17 C -0.07 -3.17 2.20 -10.71 -0.02 -3.19 16 18 C 0.03 1.90 4.45 29.85 0.13 2.03 16 19 C -0.53 -31.43 8.45 25.60 0.22 -31.21 16 20 H 0.06 3.33 7.08 -2.91 -0.02 3.31 16 21 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 22 N -0.94 -59.37 13.29 21.45 0.28 -59.08 16 23 Si 0.96 46.22 29.54 68.60 2.03 48.24 16 24 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 25 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 26 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 27 C -0.11 -3.88 5.38 30.65 0.16 -3.71 16 28 C 0.07 1.89 5.46 86.33 0.47 2.36 16 29 H 0.04 1.07 6.94 -2.39 -0.02 1.05 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 1.58 6.64 -2.39 -0.02 1.56 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 37 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.06 0.73 5.98 -2.38 -0.01 0.72 16 39 H 0.10 0.38 8.13 -2.39 -0.02 0.36 16 40 H 0.09 0.76 4.64 -2.39 -0.01 0.75 16 41 H 0.16 2.52 4.06 -2.62 -0.01 2.51 16 42 H 0.08 1.39 6.77 -2.39 -0.02 1.37 16 43 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.06 2.35 6.13 -2.39 -0.01 2.34 16 45 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 46 H 0.05 2.28 7.05 -2.39 -0.02 2.27 16 47 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 48 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 49 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 50 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 51 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 52 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 53 H 0.10 2.06 8.02 -2.38 -0.02 2.04 16 54 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -75.93 389.65 1.64 -74.29 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.84 Total: 12.62 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: 4.72 Total: -23.00 kcal Atomic # 7 Polarization: -87.12 SS G_CDS: -5.92 Total: -93.03 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.03 Total: -19.12 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Total: -75.93 1.64 -74.29 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592135864.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.635 kcal (2) G-P(sol) polarization free energy of solvation -75.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds