Wall clock time and date at job start Tue Mar 31 2020 15:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.59002 * 2 1 4 4 C 1.53196 * 109.58591 * 120.28047 * 2 1 3 5 5 C 1.53042 * 109.31360 * 65.15374 * 4 2 1 6 6 C 1.53036 * 109.52610 * 61.36977 * 5 4 2 7 7 C 1.53189 * 109.31466 * 298.61747 * 6 5 4 8 8 H 1.09005 * 109.71903 * 294.79505 * 7 6 5 9 9 C 1.53008 * 109.58749 * 174.43833 * 7 6 5 10 10 N 1.46925 * 108.76943 * 54.65625 * 7 6 5 11 11 C 1.34770 * 120.63531 * 126.40397 * 10 7 6 12 12 O 1.21283 * 120.00091 * 353.52445 * 11 10 7 13 13 C 1.50701 * 120.00446 * 173.52677 * 11 10 7 14 14 N 1.46893 * 109.47509 * 188.82559 * 13 11 10 15 15 C 1.46856 * 110.99942 * 55.11041 * 14 13 11 16 16 C 1.53037 * 109.52179 * 185.84074 * 15 14 13 17 17 C 1.53118 * 109.27750 * 300.82190 * 16 15 14 18 18 C 1.53005 * 109.52268 * 177.56046 * 17 16 15 19 19 C 1.50703 * 109.46822 * 65.31543 * 18 17 16 20 20 H 1.07998 * 120.00285 * 0.02562 * 19 18 17 21 21 C 1.37883 * 119.99799 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99876 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99887 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47035 * 60.00051 * 23 21 19 25 25 H 1.48501 * 109.47109 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46967 * 299.99979 * 23 21 19 27 27 C 1.53114 * 109.16319 * 57.65762 * 17 16 15 28 28 C 1.46846 * 110.99998 * 179.32061 * 14 13 11 29 29 H 1.09004 * 109.47289 * 299.72303 * 1 2 3 30 30 H 1.09001 * 109.47158 * 59.71601 * 1 2 3 31 31 H 1.08994 * 109.47280 * 179.71857 * 1 2 3 32 32 H 1.09001 * 109.49671 * 305.20143 * 4 2 1 33 33 H 1.09000 * 109.49992 * 185.10542 * 4 2 1 34 34 H 1.08995 * 109.46216 * 181.38664 * 5 4 2 35 35 H 1.09000 * 109.45424 * 301.36042 * 5 4 2 36 36 H 1.09001 * 109.50230 * 58.58067 * 6 5 4 37 37 H 1.09001 * 109.49535 * 178.67913 * 6 5 4 38 38 H 1.09004 * 109.46753 * 297.37936 * 9 7 6 39 39 H 1.08996 * 109.46676 * 57.37768 * 9 7 6 40 40 H 1.09000 * 109.47257 * 177.38009 * 9 7 6 41 41 H 1.09002 * 109.46861 * 308.82802 * 13 11 10 42 42 H 1.09003 * 109.47057 * 68.81904 * 13 11 10 43 43 H 1.08994 * 109.46297 * 305.86043 * 15 14 13 44 44 H 1.08999 * 109.46046 * 65.82868 * 15 14 13 45 45 H 1.09003 * 109.50122 * 180.88134 * 16 15 14 46 46 H 1.09001 * 109.53627 * 60.78015 * 16 15 14 47 47 H 1.09001 * 109.52531 * 297.74534 * 17 16 15 48 48 H 1.08998 * 109.47211 * 185.31447 * 18 17 16 49 49 H 1.08994 * 109.47113 * 305.32012 * 18 17 16 50 50 H 0.96996 * 119.99740 * 180.02562 * 22 21 19 51 51 H 1.09005 * 109.50607 * 182.40698 * 27 17 16 52 52 H 1.08996 * 109.50693 * 62.28526 * 27 17 16 53 53 H 1.08994 * 109.46249 * 294.17450 * 28 14 13 54 54 H 1.08995 * 109.46033 * 54.15195 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 1.6414 -2.2026 1.1730 6 6 2.2802 -2.8462 -0.0597 7 6 1.7692 -2.1427 -1.3209 8 1 0.6989 -2.3173 -1.4312 9 6 2.5065 -2.6868 -2.5462 10 7 2.0225 -0.7011 -1.1936 11 6 2.6936 -0.0344 -2.1535 12 8 3.1963 -0.6416 -3.0752 13 6 2.8195 1.4656 -2.0817 14 7 3.4016 1.9687 -3.3330 15 6 2.6196 1.5234 -4.4935 16 6 3.3328 1.9412 -5.7815 17 6 3.4889 3.4643 -5.8017 18 6 4.2552 3.8831 -7.0580 19 6 3.4341 3.5576 -8.2791 20 1 2.4627 3.0984 -8.1699 21 6 3.9225 3.8471 -9.5356 22 7 5.1052 4.4068 -9.6684 23 14 2.9044 3.4443 -11.0491 24 1 1.6147 4.1779 -10.9877 25 1 3.6481 3.8507 -12.2685 26 1 2.6413 1.9834 -11.0942 27 6 4.2648 3.9065 -4.5580 28 6 3.5246 3.4318 -3.3054 29 1 -0.3634 0.5095 0.8925 30 1 -0.3633 0.5182 -0.8874 31 1 -0.3633 -1.0276 -0.0050 32 1 1.6074 -0.2756 2.1372 33 1 3.1296 -0.6487 1.2923 34 1 1.9842 -2.7175 2.0704 35 1 0.5565 -2.2800 1.1020 36 1 3.3642 -2.7470 -0.0015 37 1 2.0127 -3.9022 -0.0986 38 1 3.5697 -2.4631 -2.4594 39 1 2.3658 -3.7661 -2.6052 40 1 2.1091 -2.2188 -3.4468 41 1 1.8332 1.9065 -1.9367 42 1 3.4649 1.7365 -1.2460 43 1 2.5196 0.4383 -4.4693 44 1 1.6304 1.9800 -4.4617 45 1 2.7443 1.6242 -6.6426 46 1 4.3168 1.4740 -5.8213 47 1 2.5041 3.9314 -5.8019 48 1 4.4483 4.9553 -7.0253 49 1 5.2018 3.3446 -7.1027 50 1 5.4486 4.6107 -10.5523 51 1 4.3422 4.9937 -4.5447 52 1 5.2635 3.4702 -4.5778 53 1 2.5312 3.8793 -3.2791 54 1 4.0820 3.7326 -2.4183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592135865.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:36 Heat of formation + Delta-G solvation = -54.754786 kcal Electronic energy + Delta-G solvation = -29067.880769 eV Core-core repulsion = 25424.370930 eV Total energy + Delta-G solvation = -3643.509839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.82356 -39.98984 -38.51181 -36.14091 -34.70958 -33.97843 -33.78815 -31.67743 -30.69887 -29.77029 -27.65852 -27.39230 -25.36114 -24.37622 -24.00901 -23.01375 -22.21055 -21.57597 -20.45639 -19.30160 -18.44898 -17.77318 -17.15541 -16.92266 -16.53580 -16.25271 -15.85939 -15.69254 -15.38056 -15.12895 -14.88370 -14.82041 -14.67083 -14.18593 -14.12305 -14.03468 -13.74489 -13.56293 -13.40726 -13.34760 -12.96458 -12.88230 -12.73115 -12.70481 -12.61187 -12.46178 -12.36676 -12.16332 -12.01803 -11.97373 -11.74421 -11.70453 -11.47727 -11.30937 -11.24050 -10.93529 -10.71401 -10.53063 -9.89490 -9.47478 -9.16822 -8.17945 -6.27581 1.37104 1.40805 1.48312 1.65530 1.92421 2.40799 2.97481 3.14653 3.50875 3.76392 3.88229 3.99770 4.01996 4.05108 4.07244 4.11158 4.22863 4.29858 4.35980 4.37119 4.42205 4.45725 4.53701 4.60435 4.68721 4.70965 4.72959 4.76613 4.83529 4.85159 4.97913 5.00575 5.03348 5.09075 5.09696 5.13611 5.14418 5.18857 5.24069 5.29622 5.37755 5.39763 5.43495 5.46765 5.56131 5.56803 5.76074 5.81072 5.88269 6.09357 6.17665 6.29876 6.52589 6.87933 7.31349 7.40276 8.93922 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.022377 B = 0.002642 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.995874 B =10595.441569 C =11193.529100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 H 0.103 0.897 4 C -0.126 4.126 5 C -0.118 4.118 6 C -0.126 4.126 7 C 0.143 3.857 8 H 0.078 0.922 9 C -0.129 4.129 10 N -0.604 5.604 11 C 0.507 3.493 12 O -0.548 6.548 13 C 0.039 3.961 14 N -0.537 5.537 15 C 0.059 3.941 16 C -0.088 4.088 17 C -0.074 4.074 18 C 0.035 3.965 19 C -0.531 4.531 20 H 0.057 0.943 21 C -0.003 4.003 22 N -0.935 5.935 23 Si 0.961 3.039 24 H -0.265 1.265 25 H -0.282 1.282 26 H -0.270 1.270 27 C -0.107 4.107 28 C 0.069 3.931 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.044 0.956 41 H 0.076 0.924 42 H 0.125 0.875 43 H 0.087 0.913 44 H 0.025 0.975 45 H 0.048 0.952 46 H 0.038 0.962 47 H 0.050 0.950 48 H -0.010 1.010 49 H -0.017 1.017 50 H 0.262 0.738 51 H 0.069 0.931 52 H 0.050 0.950 53 H 0.041 0.959 54 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.265 -11.446 29.298 33.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.023 3.977 3 H 0.120 0.880 4 C -0.164 4.164 5 C -0.156 4.156 6 C -0.165 4.165 7 C 0.040 3.960 8 H 0.096 0.904 9 C -0.186 4.186 10 N -0.338 5.338 11 C 0.296 3.704 12 O -0.426 6.426 13 C -0.091 4.091 14 N -0.263 5.263 15 C -0.068 4.068 16 C -0.126 4.126 17 C -0.092 4.092 18 C -0.002 4.002 19 C -0.569 4.569 20 H 0.076 0.924 21 C -0.200 4.200 22 N -0.576 5.576 23 Si 0.785 3.215 24 H -0.190 1.190 25 H -0.207 1.207 26 H -0.195 1.195 27 C -0.145 4.145 28 C -0.058 4.058 29 H 0.108 0.892 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.094 0.906 42 H 0.142 0.858 43 H 0.105 0.895 44 H 0.043 0.957 45 H 0.067 0.933 46 H 0.057 0.943 47 H 0.069 0.931 48 H 0.008 0.992 49 H 0.002 0.998 50 H 0.071 0.929 51 H 0.088 0.912 52 H 0.069 0.931 53 H 0.059 0.941 54 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.412 -11.898 28.647 32.721 hybrid contribution -0.665 0.274 -1.491 1.655 sum -11.077 -11.624 27.156 31.548 Atomic orbital electron populations 1.22160 0.93903 1.02921 1.02941 1.21588 0.95283 0.96907 0.83898 0.87952 1.21925 1.01213 0.96003 0.97264 1.21555 1.01268 0.95355 0.97396 1.21963 1.00349 1.00132 0.94018 1.21299 0.99442 0.79366 0.95859 0.90382 1.22053 1.00670 0.98960 0.96909 1.48346 1.55527 1.08987 1.20981 1.20862 0.77543 0.90363 0.81661 1.90744 1.47406 1.68960 1.35512 1.22118 1.01023 0.91564 0.94372 1.61619 1.51844 1.11380 1.01468 1.22236 0.93255 1.01491 0.89834 1.21328 0.99516 0.95699 0.96054 1.21095 0.98172 0.95224 0.94741 1.18995 0.94331 0.94184 0.92720 1.21620 1.03559 1.39521 0.92250 0.92447 1.25969 0.96247 0.95176 1.02600 1.70097 1.19319 1.44109 1.24039 0.85571 0.78842 0.78892 0.78184 1.19006 1.20744 1.19517 1.21598 0.98971 1.00132 0.93802 1.22075 0.99485 0.85712 0.98571 0.89248 0.93366 0.91872 0.88384 0.92217 0.90602 0.90592 0.92877 0.89840 0.93345 0.92735 0.93724 0.90584 0.85768 0.89537 0.95735 0.93321 0.94332 0.93127 0.99188 0.99815 0.92897 0.91241 0.93099 0.94073 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.02 71.98 0.65 -0.70 16 2 C 0.13 1.31 3.02 44.97 0.14 1.45 16 3 H 0.10 0.86 6.06 -2.39 -0.01 0.85 16 4 C -0.13 -0.99 5.55 30.67 0.17 -0.82 16 5 C -0.12 -0.96 5.68 30.62 0.17 -0.79 16 6 C -0.13 -1.60 5.37 30.67 0.16 -1.43 16 7 C 0.14 2.47 3.07 44.98 0.14 2.61 16 8 H 0.08 1.21 7.49 -2.38 -0.02 1.19 16 9 C -0.13 -3.04 7.59 71.98 0.55 -2.49 16 10 N -0.60 -10.73 2.68 -771.32 -2.07 -12.79 16 11 C 0.51 12.57 7.08 87.66 0.62 13.19 16 12 O -0.55 -18.40 9.33 -3.04 -0.03 -18.43 16 13 C 0.04 0.84 3.93 85.56 0.34 1.18 16 14 N -0.54 -16.16 4.53 -900.93 -4.08 -20.24 16 15 C 0.06 2.09 5.03 86.32 0.43 2.52 16 16 C -0.09 -3.81 5.15 30.65 0.16 -3.65 16 17 C -0.07 -3.25 2.20 -10.71 -0.02 -3.28 16 18 C 0.03 1.94 4.45 29.85 0.13 2.08 16 19 C -0.53 -31.66 8.45 25.60 0.22 -31.44 16 20 H 0.06 3.30 7.08 -2.91 -0.02 3.28 16 21 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 22 N -0.93 -59.38 13.29 21.45 0.28 -59.09 16 23 Si 0.96 46.32 29.54 68.60 2.03 48.34 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 26 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 27 C -0.11 -3.86 5.38 30.65 0.16 -3.70 16 28 C 0.07 1.88 5.46 86.33 0.47 2.35 16 29 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.54 5.72 -2.39 -0.01 0.53 16 32 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.08 0.51 6.51 -2.39 -0.02 0.49 16 36 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.05 1.38 6.76 -2.39 -0.02 1.37 16 39 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.04 1.30 6.74 -2.39 -0.02 1.28 16 41 H 0.08 1.31 7.78 -2.39 -0.02 1.30 16 42 H 0.12 2.01 7.85 -2.39 -0.02 1.99 16 43 H 0.09 3.25 5.13 -2.39 -0.01 3.24 16 44 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.05 2.25 7.05 -2.39 -0.02 2.23 16 46 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 48 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 49 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 50 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 51 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 52 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 53 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 54 H 0.10 2.11 8.12 -2.39 -0.02 2.09 16 Total: -1.00 -74.50 393.47 1.92 -72.57 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.84 Total: 12.25 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: 4.95 Total: -22.61 kcal Atomic # 7 Polarization: -86.26 SS G_CDS: -5.87 Total: -92.13 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.03 Total: -18.43 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.34 kcal Total: -74.50 1.92 -72.57 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592135865.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.820 kcal (2) G-P(sol) polarization free energy of solvation -74.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds