Wall clock time and date at job start Tue Mar 31 2020 15:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.69998 * 2 1 4 4 C 1.53623 * 109.74103 * 239.45586 * 2 1 3 5 5 C 1.53046 * 109.24039 * 295.12113 * 4 2 1 6 6 C 1.53040 * 109.53767 * 298.50611 * 5 4 2 7 7 C 1.53200 * 109.30876 * 61.36866 * 6 5 4 8 8 H 1.08999 * 109.70592 * 65.22127 * 7 6 5 9 9 C 1.53002 * 109.58570 * 185.57992 * 7 6 5 10 10 N 1.46924 * 108.77253 * 305.36158 * 7 6 5 11 11 C 1.34778 * 120.62966 * 233.58245 * 10 7 6 12 12 O 1.21273 * 120.00407 * 354.21658 * 11 10 7 13 13 C 1.50701 * 119.99663 * 174.21327 * 11 10 7 14 14 N 1.46903 * 109.47097 * 179.97438 * 13 11 10 15 15 C 1.46846 * 111.00137 * 170.00135 * 14 13 11 16 16 C 1.53038 * 109.52107 * 185.84350 * 15 14 13 17 17 C 1.53113 * 109.28005 * 300.81684 * 16 15 14 18 18 C 1.52998 * 109.52158 * 177.55927 * 17 16 15 19 19 C 1.50704 * 109.46749 * 175.00124 * 18 17 16 20 20 H 1.07992 * 120.00537 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99885 * 179.97438 * 19 18 17 22 22 N 1.31504 * 120.00184 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99901 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.46860 * 269.99745 * 23 21 19 25 25 H 1.48504 * 109.47198 * 29.99584 * 23 21 19 26 26 H 1.48497 * 109.46980 * 149.99826 * 23 21 19 27 27 C 1.53125 * 109.15629 * 57.65838 * 17 16 15 28 28 C 1.46846 * 111.00468 * 294.21708 * 14 13 11 29 29 H 1.09000 * 109.47514 * 299.64258 * 1 2 3 30 30 H 1.08997 * 109.47285 * 59.64463 * 1 2 3 31 31 H 1.09006 * 109.46794 * 179.64036 * 1 2 3 32 32 H 1.08997 * 109.63722 * 175.12829 * 4 2 1 33 33 H 1.09001 * 109.46187 * 55.00120 * 4 2 1 34 34 H 1.09003 * 109.46024 * 178.49093 * 5 4 2 35 35 H 1.08996 * 109.45197 * 58.52637 * 5 4 2 36 36 H 1.09004 * 109.49883 * 301.42070 * 6 5 4 37 37 H 1.08997 * 109.50102 * 181.31897 * 6 5 4 38 38 H 1.08997 * 109.47216 * 185.08393 * 9 7 6 39 39 H 1.09004 * 109.46770 * 305.08157 * 9 7 6 40 40 H 1.08995 * 109.47405 * 65.07760 * 9 7 6 41 41 H 1.09004 * 109.47032 * 60.00475 * 13 11 10 42 42 H 1.08998 * 109.47634 * 300.00060 * 13 11 10 43 43 H 1.09000 * 109.46273 * 65.82515 * 15 14 13 44 44 H 1.09007 * 109.45054 * 305.85198 * 15 14 13 45 45 H 1.09006 * 109.49962 * 180.87553 * 16 15 14 46 46 H 1.09005 * 109.53600 * 60.78517 * 16 15 14 47 47 H 1.08999 * 109.52498 * 297.68826 * 17 16 15 48 48 H 1.08998 * 109.47292 * 55.00847 * 18 17 16 49 49 H 1.08998 * 109.47705 * 295.00035 * 18 17 16 50 50 H 0.97006 * 120.00309 * 180.02562 * 22 21 19 51 51 H 1.08998 * 109.50241 * 62.28672 * 27 17 16 52 52 H 1.09006 * 109.49769 * 182.40299 * 27 17 16 53 53 H 1.09003 * 109.45435 * 294.17346 * 28 14 13 54 54 H 1.09004 * 109.46168 * 54.13387 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0489 -0.7348 -1.2453 5 6 1.6419 -2.2081 -1.1677 6 6 2.2757 -2.8498 0.0687 7 6 1.7642 -2.1400 1.3263 8 1 0.6932 -2.3107 1.4348 9 6 2.4971 -2.6820 2.5551 10 7 2.0226 -0.6996 1.1944 11 6 2.6936 -0.0317 2.1536 12 8 2.9988 -0.5941 3.1838 13 6 3.0648 1.4140 1.9459 14 7 3.7841 1.9095 3.1270 15 6 4.3673 3.2327 2.8713 16 6 5.2275 3.6519 4.0657 17 6 4.3583 3.6914 5.3256 18 6 5.2255 4.0508 6.5338 19 6 4.3505 4.2098 7.7505 20 1 3.2829 4.0682 7.6702 21 6 4.9132 4.5349 8.9666 22 7 4.1497 4.6741 10.0282 23 14 6.7600 4.7790 9.1058 24 1 7.4072 3.4833 9.4334 25 1 7.2911 5.2852 7.8147 26 1 7.0496 5.7626 10.1799 27 6 3.7244 2.3145 5.5421 28 6 2.9078 1.9340 4.3051 29 1 -0.3634 0.5083 0.8932 30 1 -0.3634 0.5193 -0.8867 31 1 -0.3633 -1.0277 -0.0065 32 1 3.1354 -0.6594 -1.2890 33 1 1.6167 -0.2847 -2.1390 34 1 1.9851 -2.7273 -2.0625 35 1 0.5566 -2.2817 -1.0991 36 1 3.3601 -2.7543 0.0127 37 1 2.0045 -3.9046 0.1106 38 1 2.0699 -2.2423 3.4563 39 1 2.3893 -3.7661 2.5935 40 1 3.5542 -2.4241 2.4909 41 1 2.1600 2.0038 1.7981 42 1 3.7037 1.5026 1.0673 43 1 3.5683 3.9598 2.7262 44 1 4.9864 3.1896 1.9752 45 1 5.6476 4.6409 3.8822 46 1 6.0354 2.9332 4.2031 47 1 3.5747 4.4393 5.2043 48 1 5.7503 4.9860 6.3391 49 1 5.9511 3.2566 6.7094 50 1 4.5455 4.9033 10.8837 51 1 4.5082 1.5742 5.7026 52 1 3.0706 2.3479 6.4137 53 1 2.1157 2.6672 4.1532 54 1 2.4667 0.9478 4.4502 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592135866.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:40 Heat of formation + Delta-G solvation = -56.361168 kcal Electronic energy + Delta-G solvation = -29025.178990 eV Core-core repulsion = 25381.599492 eV Total energy + Delta-G solvation = -3643.579497 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.75040 -40.00124 -38.49358 -36.16030 -34.68097 -34.04854 -33.74968 -31.69665 -30.98864 -29.92742 -27.76869 -27.40899 -25.12681 -24.34445 -24.03163 -22.93077 -22.06330 -21.54321 -20.49331 -19.28499 -18.87603 -17.83035 -17.17590 -16.81776 -16.38454 -16.30220 -15.84244 -15.72042 -15.22527 -15.19236 -14.94535 -14.85333 -14.62292 -14.47469 -14.19592 -14.06002 -13.73669 -13.61258 -13.49153 -13.40102 -12.97803 -12.89996 -12.78900 -12.71679 -12.55376 -12.40309 -12.31183 -12.06376 -11.99540 -11.90146 -11.74501 -11.68570 -11.48665 -11.31289 -11.27087 -10.94605 -10.81893 -10.73258 -9.97844 -9.48994 -9.16759 -8.27155 -6.29258 1.34985 1.36136 1.48509 1.70369 1.93424 2.37058 2.96796 3.08206 3.53178 3.76571 3.88796 3.99191 3.99243 4.02986 4.05016 4.09213 4.22458 4.29029 4.31903 4.37687 4.39924 4.45514 4.53535 4.57965 4.66022 4.70825 4.71904 4.74513 4.81297 4.84056 4.97131 4.99052 5.03461 5.03938 5.07800 5.10475 5.13505 5.18414 5.23856 5.24147 5.29251 5.34251 5.39172 5.42299 5.51818 5.55769 5.70643 5.72922 5.78125 6.07580 6.17586 6.33420 6.54109 6.77713 7.34196 7.34821 8.89788 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.025469 B = 0.002583 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.091142 B =10836.643577 C =11165.965876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 H 0.103 0.897 4 C -0.125 4.125 5 C -0.119 4.119 6 C -0.125 4.125 7 C 0.143 3.857 8 H 0.074 0.926 9 C -0.130 4.130 10 N -0.606 5.606 11 C 0.507 3.493 12 O -0.551 6.551 13 C 0.039 3.961 14 N -0.535 5.535 15 C 0.065 3.935 16 C -0.108 4.108 17 C -0.070 4.070 18 C -0.005 4.005 19 C -0.519 4.519 20 H 0.032 0.968 21 C 0.000 4.000 22 N -0.954 5.954 23 Si 0.949 3.051 24 H -0.272 1.272 25 H -0.245 1.245 26 H -0.283 1.283 27 C -0.091 4.091 28 C 0.070 3.930 29 H 0.044 0.956 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.055 0.945 40 H 0.041 0.959 41 H 0.075 0.925 42 H 0.127 0.873 43 H 0.040 0.960 44 H 0.101 0.899 45 H 0.078 0.922 46 H 0.059 0.941 47 H 0.048 0.952 48 H 0.021 0.979 49 H 0.010 0.990 50 H 0.264 0.736 51 H 0.046 0.954 52 H 0.039 0.961 53 H 0.025 0.975 54 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.695 -12.110 -31.796 34.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.023 3.977 3 H 0.121 0.879 4 C -0.163 4.163 5 C -0.156 4.156 6 C -0.163 4.163 7 C 0.041 3.959 8 H 0.092 0.908 9 C -0.187 4.187 10 N -0.341 5.341 11 C 0.296 3.704 12 O -0.429 6.429 13 C -0.091 4.091 14 N -0.261 5.261 15 C -0.062 4.062 16 C -0.146 4.146 17 C -0.088 4.088 18 C -0.043 4.043 19 C -0.557 4.557 20 H 0.050 0.950 21 C -0.196 4.196 22 N -0.596 5.596 23 Si 0.773 3.227 24 H -0.197 1.197 25 H -0.168 1.168 26 H -0.209 1.209 27 C -0.129 4.129 28 C -0.058 4.058 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.093 0.907 42 H 0.145 0.855 43 H 0.058 0.942 44 H 0.119 0.881 45 H 0.097 0.903 46 H 0.078 0.922 47 H 0.066 0.934 48 H 0.039 0.961 49 H 0.028 0.972 50 H 0.073 0.927 51 H 0.065 0.935 52 H 0.057 0.943 53 H 0.043 0.957 54 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.143 -12.685 -30.984 33.873 hybrid contribution -0.190 0.608 1.169 1.331 sum -5.333 -12.077 -29.816 32.608 Atomic orbital electron populations 1.22155 0.94099 1.02895 1.02788 1.21681 0.95074 0.96940 0.83998 0.87925 1.21996 1.01328 0.95839 0.97173 1.21559 1.01198 0.95475 0.97391 1.21958 1.00462 1.00019 0.93902 1.21261 0.99352 0.79505 0.95819 0.90782 1.22030 1.00214 0.99070 0.97407 1.48369 1.55588 1.08975 1.21125 1.20916 0.77189 0.89351 0.82959 1.90758 1.54772 1.68932 1.28398 1.22094 0.99682 0.92217 0.95134 1.61549 1.34961 1.26611 1.02958 1.22123 0.97750 0.87672 0.98625 1.21641 0.97990 1.01454 0.93485 1.20979 0.97306 0.95775 0.94782 1.19568 0.95374 0.95866 0.93461 1.21479 0.94413 1.46021 0.93813 0.95006 1.26024 1.03441 0.94784 0.95359 1.70074 1.37793 1.50921 1.00799 0.85672 0.79760 0.78449 0.78847 1.19728 1.16794 1.20887 1.21347 0.98784 0.96707 0.96087 1.22011 0.93319 1.00211 0.90257 0.93649 0.89212 0.91882 0.91853 0.88515 0.90518 0.90791 0.92639 0.89873 0.93172 0.92613 0.93967 0.90694 0.85508 0.94192 0.88108 0.90341 0.92193 0.93358 0.96118 0.97185 0.92682 0.93546 0.94263 0.95674 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.03 71.98 0.65 -0.81 16 2 C 0.13 1.31 3.14 45.12 0.14 1.45 16 3 H 0.10 0.86 5.93 -2.39 -0.01 0.84 16 4 C -0.13 -0.92 5.58 30.82 0.17 -0.75 16 5 C -0.12 -0.94 5.68 30.62 0.17 -0.76 16 6 C -0.13 -1.54 5.37 30.67 0.16 -1.38 16 7 C 0.14 2.51 3.07 44.98 0.14 2.64 16 8 H 0.07 1.20 7.49 -2.39 -0.02 1.18 16 9 C -0.13 -3.08 7.61 71.98 0.55 -2.53 16 10 N -0.61 -10.81 2.68 -770.53 -2.06 -12.87 16 11 C 0.51 12.57 7.17 87.66 0.63 13.20 16 12 O -0.55 -18.65 9.90 -3.01 -0.03 -18.68 16 13 C 0.04 0.81 3.81 85.56 0.33 1.14 16 14 N -0.54 -15.39 4.40 -900.92 -3.96 -19.35 16 15 C 0.07 1.64 5.46 86.33 0.47 2.11 16 16 C -0.11 -3.43 5.38 30.64 0.16 -3.26 16 17 C -0.07 -2.88 2.20 -10.71 -0.02 -2.91 16 18 C -0.01 -0.26 3.52 29.85 0.11 -0.16 16 19 C -0.52 -31.28 9.00 25.60 0.23 -31.05 16 20 H 0.03 2.11 7.32 -2.91 -0.02 2.08 16 21 C 0.00 -0.01 5.47 84.66 0.46 0.45 16 22 N -0.95 -62.32 13.96 21.45 0.30 -62.02 16 23 Si 0.95 46.51 27.47 68.60 1.88 48.39 16 24 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 25 H -0.24 -11.06 6.54 99.48 0.65 -10.40 16 26 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 27 C -0.09 -3.88 5.15 30.65 0.16 -3.73 16 28 C 0.07 2.44 5.10 86.32 0.44 2.88 16 29 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.58 5.71 -2.38 -0.01 0.57 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.07 0.50 6.49 -2.39 -0.02 0.49 16 36 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.05 1.49 6.54 -2.39 -0.02 1.48 16 39 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.04 1.19 6.96 -2.39 -0.02 1.17 16 41 H 0.08 1.30 7.68 -2.38 -0.02 1.29 16 42 H 0.13 1.88 7.78 -2.39 -0.02 1.86 16 43 H 0.04 0.94 8.14 -2.39 -0.02 0.93 16 44 H 0.10 1.90 8.02 -2.38 -0.02 1.88 16 45 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 46 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 47 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 49 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 50 H 0.26 16.10 8.31 -92.70 -0.77 15.33 16 51 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 52 H 0.04 1.90 7.05 -2.38 -0.02 1.88 16 53 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 54 H 0.07 2.72 5.78 -2.38 -0.01 2.71 16 Total: -1.00 -76.09 390.71 1.87 -74.22 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.79 Total: 13.76 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: 4.95 Total: -23.45 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -5.72 Total: -94.24 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.03 Total: -18.68 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.88 Total: 48.39 kcal Total: -76.09 1.87 -74.22 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592135866.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.861 kcal (2) G-P(sol) polarization free energy of solvation -76.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds