Wall clock time and date at job start Tue Mar 31 2020 15:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47006 * 2 1 4 4 C 1.52993 * 109.47230 * 240.00233 * 2 1 3 5 5 C 1.53006 * 109.47245 * 299.99906 * 4 2 1 6 6 C 1.53000 * 109.46951 * 300.00517 * 5 4 2 7 7 C 1.52997 * 109.47231 * 59.99687 * 6 5 4 8 8 C 1.53000 * 109.46808 * 119.99813 * 2 1 3 9 9 H 1.09006 * 109.46805 * 179.97438 * 8 2 1 10 10 C 1.52993 * 109.47560 * 299.99815 * 8 2 1 11 11 C 1.52997 * 109.47170 * 184.99965 * 10 8 2 12 12 N 1.46512 * 109.46845 * 180.02562 * 11 10 8 13 13 C 1.34769 * 119.99644 * 180.02562 * 12 11 10 14 14 O 1.21591 * 120.00326 * 5.07029 * 13 12 11 15 15 N 1.34777 * 120.00071 * 185.07575 * 13 12 11 16 16 C 1.46931 * 120.62645 * 354.98124 * 15 13 12 17 17 C 1.53190 * 108.77336 * 126.37522 * 16 15 13 18 18 C 1.53042 * 109.34184 * 54.61681 * 17 16 15 19 19 C 1.53033 * 109.53826 * 298.68522 * 18 17 16 20 20 H 1.09001 * 109.49668 * 301.34579 * 19 18 17 21 21 C 1.50703 * 109.49539 * 181.28582 * 19 18 17 22 22 H 1.07994 * 120.00297 * 0.06238 * 21 19 18 23 23 C 1.37885 * 119.99755 * 180.02562 * 21 19 18 24 24 N 1.31514 * 119.99812 * 0.02562 * 23 21 19 25 25 Si 1.86798 * 119.99640 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47259 * 270.00113 * 25 23 21 27 27 H 1.48497 * 109.47384 * 30.00219 * 25 23 21 28 28 H 1.48501 * 109.46928 * 150.00019 * 25 23 21 29 29 C 1.46925 * 120.63230 * 174.96325 * 15 13 12 30 30 H 1.09000 * 109.47069 * 300.00031 * 1 2 3 31 31 H 1.09005 * 109.46642 * 59.99899 * 1 2 3 32 32 H 1.08991 * 109.47137 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47417 * 59.99784 * 4 2 1 34 34 H 1.09006 * 109.47453 * 180.02562 * 4 2 1 35 35 H 1.09006 * 109.46709 * 59.99771 * 5 4 2 36 36 H 1.09000 * 109.47541 * 179.97438 * 5 4 2 37 37 H 1.09004 * 109.47185 * 179.97438 * 6 5 4 38 38 H 1.09006 * 109.46805 * 299.99196 * 6 5 4 39 39 H 1.09004 * 109.47080 * 180.02562 * 7 6 5 40 40 H 1.08992 * 109.47640 * 60.00153 * 7 6 5 41 41 H 1.09004 * 109.46817 * 65.00024 * 10 8 2 42 42 H 1.08998 * 109.47540 * 305.00463 * 10 8 2 43 43 H 1.08991 * 109.47033 * 60.00390 * 11 10 8 44 44 H 1.08999 * 109.47252 * 299.99684 * 11 10 8 45 45 H 0.97000 * 120.00135 * 0.02562 * 12 11 10 46 46 H 1.08997 * 109.58566 * 246.15996 * 16 15 13 47 47 H 1.09000 * 109.58653 * 6.44049 * 16 15 13 48 48 H 1.09004 * 109.49458 * 174.58570 * 17 16 15 49 49 H 1.09001 * 109.49595 * 294.64838 * 17 16 15 50 50 H 1.08998 * 109.48159 * 178.64433 * 18 17 16 51 51 H 1.08994 * 109.43038 * 58.68971 * 18 17 16 52 52 H 0.97001 * 119.99306 * 179.97438 * 24 23 21 53 53 H 1.09005 * 109.58728 * 113.84457 * 29 15 13 54 54 H 1.08990 * 109.70741 * 353.48642 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5301 -2.1637 -1.2493 6 6 2.0400 -2.8849 0.0000 7 6 1.5299 -2.1637 1.2492 8 6 2.0399 -0.7212 1.2493 9 1 3.1300 -0.7216 1.2491 10 6 1.5300 0.0000 2.4985 11 6 2.1400 -0.6450 3.7445 12 7 1.6512 0.0453 4.9408 13 6 2.0580 -0.3533 6.1622 14 8 2.9003 -1.2238 6.2685 15 7 1.5313 0.2130 7.2660 16 6 0.5950 1.3399 7.1550 17 6 -0.6809 0.9992 7.9314 18 6 -0.3145 0.6257 9.3696 19 6 0.5917 -0.6075 9.3632 20 1 0.0775 -1.4342 8.8729 21 6 0.9261 -0.9933 10.7811 22 1 0.5312 -0.4175 11.6049 23 6 1.7358 -2.0821 11.0265 24 7 2.2166 -2.7834 10.0233 25 14 2.1510 -2.5598 12.7840 26 1 3.3883 -1.8572 13.2089 27 1 1.0308 -2.1746 13.6795 28 1 2.3639 -4.0275 12.8608 29 6 1.8820 -0.2851 8.6030 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6767 -0.2073 -2.1392 34 1 3.1301 -0.7216 -1.2490 35 1 0.4400 -2.1637 -1.2493 36 1 1.8930 -2.6774 -2.1395 37 1 1.6763 -3.9125 0.0002 38 1 3.1300 -2.8850 0.0000 39 1 1.8936 -2.6773 2.1392 40 1 0.4400 -2.1637 1.2492 41 1 0.4437 -0.0769 2.5444 42 1 1.8183 1.0503 2.4549 43 1 3.2263 -0.5681 3.6986 44 1 1.8516 -1.6953 3.7882 45 1 1.0348 0.7891 4.8537 46 1 1.0505 2.2362 7.5760 47 1 0.3523 1.5115 6.1063 48 1 -1.3446 1.8638 7.9379 49 1 -1.1836 0.1581 7.4539 50 1 -1.2228 0.4060 9.9308 51 1 0.2092 1.4587 9.8384 52 1 2.7865 -3.5491 10.1960 53 1 2.4424 0.4788 9.1421 54 1 2.4877 -1.1866 8.5122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595504421.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:53 Heat of formation + Delta-G solvation = -84.254986 kcal Electronic energy + Delta-G solvation = -28389.177425 eV Core-core repulsion = 24744.388361 eV Total energy + Delta-G solvation = -3644.789064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.31089 -40.37651 -38.51877 -36.35095 -35.28100 -33.77148 -33.14074 -32.61237 -31.47871 -29.33695 -27.43235 -26.95035 -25.95151 -24.40951 -23.43239 -22.94568 -21.86672 -21.64144 -20.28262 -19.24427 -19.04589 -18.19809 -17.33970 -16.73694 -16.62810 -16.43988 -15.87979 -15.47058 -15.26068 -15.18200 -15.06105 -14.97062 -14.52608 -14.37929 -14.27780 -13.89022 -13.72317 -13.56046 -13.54593 -13.04525 -12.88366 -12.69320 -12.59614 -12.52159 -12.37196 -12.28311 -12.22128 -12.04969 -11.89814 -11.82968 -11.62600 -11.48165 -11.24967 -11.03325 -10.95800 -10.88002 -10.75351 -10.71221 -10.51479 -10.11204 -9.23749 -8.09665 -6.27046 1.40850 1.41323 1.52350 1.81125 2.27456 2.42359 3.06066 3.20587 3.70927 3.77040 3.85801 4.04811 4.10151 4.16352 4.21399 4.29401 4.40134 4.42248 4.51343 4.52488 4.54138 4.61177 4.64579 4.72466 4.75064 4.81525 4.82025 4.86200 4.86278 5.00762 5.06825 5.11687 5.13077 5.15045 5.20174 5.27300 5.27744 5.29808 5.31484 5.34711 5.39110 5.46429 5.50138 5.56692 5.57131 5.62006 5.66478 5.74024 5.90292 5.98868 6.19463 6.37006 6.86395 7.16588 7.42958 7.70563 8.93621 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.021049 B = 0.002475 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.885902 B =11308.796023 C =12142.091380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.081 4.081 3 H 0.076 0.924 4 C -0.114 4.114 5 C -0.119 4.119 6 C -0.120 4.120 7 C -0.122 4.122 8 C -0.074 4.074 9 H 0.065 0.935 10 C -0.112 4.112 11 C 0.138 3.862 12 N -0.734 5.734 13 C 0.691 3.309 14 O -0.644 6.644 15 N -0.628 5.628 16 C 0.110 3.890 17 C -0.125 4.125 18 C -0.105 4.105 19 C 0.038 3.962 20 H -0.015 1.015 21 C -0.535 4.535 22 H 0.063 0.937 23 C 0.007 3.993 24 N -0.916 5.916 25 Si 0.958 3.042 26 H -0.275 1.275 27 H -0.261 1.261 28 H -0.288 1.288 29 C 0.143 3.857 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.045 0.955 44 H 0.044 0.956 45 H 0.408 0.592 46 H 0.079 0.921 47 H 0.101 0.899 48 H 0.105 0.895 49 H 0.049 0.951 50 H 0.052 0.948 51 H 0.057 0.943 52 H 0.259 0.741 53 H 0.032 0.968 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.541 10.187 -23.507 26.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.099 4.099 3 H 0.094 0.906 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.159 4.159 8 C -0.093 4.093 9 H 0.084 0.916 10 C -0.149 4.149 11 C 0.014 3.986 12 N -0.393 5.393 13 C 0.392 3.608 14 O -0.526 6.526 15 N -0.364 5.364 16 C -0.012 4.012 17 C -0.163 4.163 18 C -0.143 4.143 19 C 0.019 3.981 20 H 0.003 0.997 21 C -0.574 4.574 22 H 0.081 0.919 23 C -0.192 4.192 24 N -0.554 5.554 25 Si 0.784 3.216 26 H -0.201 1.201 27 H -0.186 1.186 28 H -0.214 1.214 29 C 0.020 3.980 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.247 0.753 46 H 0.097 0.903 47 H 0.119 0.881 48 H 0.124 0.876 49 H 0.068 0.932 50 H 0.071 0.929 51 H 0.076 0.924 52 H 0.068 0.932 53 H 0.050 0.950 54 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.848 9.412 -23.479 25.756 hybrid contribution 0.437 -0.738 1.243 1.511 sum -4.411 8.674 -22.236 24.272 Atomic orbital electron populations 1.21991 0.94894 1.02081 1.01998 1.21070 0.96295 0.99050 0.93494 0.90601 1.21563 1.00415 0.95506 0.97625 1.21560 1.01095 0.95759 0.97191 1.21525 1.00507 0.98883 0.94833 1.21699 1.01184 0.95475 0.97571 1.21048 1.00017 0.94527 0.93718 0.91609 1.21813 1.01432 1.00333 0.91351 1.21276 0.98157 0.95847 0.83316 1.45123 1.52014 1.38708 1.03498 1.16265 0.81339 0.81457 0.81740 1.90871 1.37870 1.37318 1.86518 1.47683 1.47592 1.35812 1.05303 1.21873 0.89533 0.88225 1.01616 1.21902 0.96993 1.02105 0.95293 1.21504 0.98796 0.97534 0.96439 1.18918 0.92054 0.93109 0.94025 0.99708 1.21532 1.30401 1.12490 0.92943 0.91861 1.25933 0.95888 0.96345 1.01020 1.70111 1.33977 1.18962 1.32390 0.85548 0.78834 0.77042 0.80204 1.20055 1.18560 1.21396 1.21563 0.99480 0.97968 0.79008 0.92224 0.92293 0.92437 0.91154 0.92328 0.91487 0.91826 0.92304 0.92544 0.93585 0.91300 0.89979 0.89716 0.93609 0.93782 0.75278 0.90316 0.88056 0.87634 0.93183 0.92945 0.92407 0.93224 0.94968 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.15 71.98 0.59 -1.12 16 2 C -0.08 -0.98 2.72 -10.80 -0.03 -1.01 16 3 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 4 C -0.11 -1.33 5.45 30.59 0.17 -1.16 16 5 C -0.12 -1.50 5.65 30.60 0.17 -1.32 16 6 C -0.12 -1.89 5.92 30.59 0.18 -1.71 16 7 C -0.12 -2.16 4.68 30.59 0.14 -2.02 16 8 C -0.07 -1.16 1.96 -10.80 -0.02 -1.18 16 9 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 10 C -0.11 -1.84 4.29 30.59 0.13 -1.71 16 11 C 0.14 3.69 5.43 86.38 0.47 4.16 16 12 N -0.73 -21.94 5.47 -478.53 -2.62 -24.55 16 13 C 0.69 29.80 8.30 179.06 1.49 31.29 16 14 O -0.64 -35.37 15.79 -4.00 -0.06 -35.43 16 15 N -0.63 -26.07 2.97 -836.91 -2.49 -28.56 16 16 C 0.11 3.10 6.43 86.36 0.56 3.65 16 17 C -0.12 -3.63 6.08 30.67 0.19 -3.44 16 18 C -0.11 -4.07 5.11 30.62 0.16 -3.91 16 19 C 0.04 1.98 2.25 -11.46 -0.03 1.95 16 20 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 21 C -0.54 -30.00 8.56 25.60 0.22 -29.78 16 22 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 23 C 0.01 0.43 5.30 84.66 0.45 0.87 16 24 N -0.92 -57.22 11.39 21.45 0.24 -56.98 16 25 Si 0.96 45.11 29.54 68.60 2.03 47.13 16 26 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 27 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 28 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 29 C 0.14 7.41 5.39 86.36 0.47 7.87 16 30 H 0.06 0.64 6.54 -2.39 -0.02 0.63 16 31 H 0.06 0.57 8.14 -2.38 -0.02 0.56 16 32 H 0.06 0.70 4.81 -2.39 -0.01 0.69 16 33 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.06 0.72 8.14 -2.38 -0.02 0.71 16 35 H 0.07 0.82 6.43 -2.38 -0.02 0.80 16 36 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.05 1.01 6.56 -2.38 -0.02 1.00 16 40 H 0.07 1.17 6.43 -2.39 -0.02 1.15 16 41 H 0.08 1.22 6.71 -2.38 -0.02 1.20 16 42 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.04 1.36 6.56 -2.39 -0.02 1.35 16 45 H 0.41 8.88 5.93 -92.71 -0.55 8.33 16 46 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.10 2.02 5.56 -2.39 -0.01 2.01 16 48 H 0.11 2.17 8.14 -2.38 -0.02 2.15 16 49 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 50 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 51 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 52 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 53 H 0.03 1.66 8.14 -2.38 -0.02 1.64 16 54 H 0.07 4.58 5.16 -2.39 -0.01 4.56 16 Total: -1.00 -76.02 393.34 2.71 -73.31 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.32 Total: 23.65 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 5.29 Total: 1.42 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -4.86 Total: -110.09 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -0.06 Total: -35.43 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -76.02 2.71 -73.31 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595504421.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.949 kcal (2) G-P(sol) polarization free energy of solvation -76.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds