Wall clock time and date at job start Tue Mar 31 2020 15:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47369 * 2 1 4 4 C 1.53005 * 109.46719 * 239.99588 * 2 1 3 5 5 C 1.53003 * 109.47073 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46780 * 60.00284 * 5 4 2 7 7 C 1.53005 * 109.47085 * 299.99708 * 6 5 4 8 8 C 1.52997 * 109.47127 * 120.00311 * 2 1 3 9 9 H 1.09003 * 109.47298 * 59.99424 * 8 2 1 10 10 C 1.53005 * 109.46887 * 299.99631 * 8 2 1 11 11 C 1.53007 * 109.47034 * 175.00305 * 10 8 2 12 12 N 1.46495 * 109.46783 * 179.97438 * 11 10 8 13 13 C 1.34782 * 119.99871 * 180.02562 * 12 11 10 14 14 O 1.21582 * 119.99725 * 355.01608 * 13 12 11 15 15 N 1.34769 * 119.99860 * 175.01527 * 13 12 11 16 16 C 1.46924 * 120.63446 * 5.22486 * 15 13 12 17 17 C 1.53198 * 108.77426 * 126.36735 * 16 15 13 18 18 C 1.53039 * 109.31420 * 54.63684 * 17 16 15 19 19 C 1.53036 * 109.53853 * 298.63641 * 18 17 16 20 20 H 1.09006 * 109.49714 * 301.38150 * 19 18 17 21 21 C 1.50702 * 109.50176 * 181.31643 * 19 18 17 22 22 H 1.08002 * 119.99430 * 359.97438 * 21 19 18 23 23 C 1.37869 * 120.00395 * 179.97438 * 21 19 18 24 24 N 1.31521 * 120.00091 * 359.97438 * 23 21 19 25 25 Si 1.86805 * 120.00093 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46985 * 60.00213 * 25 23 21 27 27 H 1.48496 * 109.46994 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47254 * 299.99889 * 25 23 21 29 29 C 1.46932 * 120.62783 * 184.94343 * 15 13 12 30 30 H 1.09001 * 109.47143 * 300.00179 * 1 2 3 31 31 H 1.08997 * 109.47036 * 59.99822 * 1 2 3 32 32 H 1.09003 * 109.47502 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47536 * 300.00310 * 4 2 1 34 34 H 1.09005 * 109.46728 * 60.00264 * 4 2 1 35 35 H 1.08991 * 109.47069 * 180.02562 * 5 4 2 36 36 H 1.09004 * 109.46877 * 300.00082 * 5 4 2 37 37 H 1.08994 * 109.47069 * 60.00160 * 6 5 4 38 38 H 1.09006 * 109.46825 * 179.97438 * 6 5 4 39 39 H 1.08994 * 109.47536 * 300.00167 * 7 6 5 40 40 H 1.09005 * 109.46728 * 180.02562 * 7 6 5 41 41 H 1.09000 * 109.46592 * 294.99684 * 10 8 2 42 42 H 1.08995 * 109.47192 * 55.00142 * 10 8 2 43 43 H 1.08994 * 109.46592 * 299.99799 * 11 10 8 44 44 H 1.09003 * 109.46670 * 59.99738 * 11 10 8 45 45 H 0.96999 * 120.00601 * 359.97438 * 12 11 10 46 46 H 1.09000 * 109.58631 * 246.15611 * 16 15 13 47 47 H 1.08999 * 109.58464 * 6.43802 * 16 15 13 48 48 H 1.09002 * 109.49411 * 174.59051 * 17 16 15 49 49 H 1.08994 * 109.49918 * 294.65072 * 17 16 15 50 50 H 1.09005 * 109.45749 * 58.65034 * 18 17 16 51 51 H 1.08999 * 109.46062 * 178.62605 * 18 17 16 52 52 H 0.96998 * 119.99914 * 179.97438 * 24 23 21 53 53 H 1.09003 * 109.58680 * 353.42190 * 29 15 13 54 54 H 1.09006 * 109.58601 * 113.84446 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2493 5 6 3.5699 -0.7220 -1.2490 6 6 4.0794 -1.4436 0.0002 7 6 3.5695 -0.7222 1.2495 8 6 2.0400 -0.7213 1.2492 9 1 1.6766 -1.7490 1.2492 10 6 1.5300 0.0000 2.4985 11 6 1.9348 -0.7902 3.7446 12 7 1.4471 -0.0992 4.9407 13 6 1.6881 -0.6151 6.1623 14 8 2.2302 -1.6982 6.2687 15 7 1.3282 0.0696 7.2659 16 6 0.5713 1.3240 7.1550 17 6 -0.6883 1.2180 8.0205 18 6 -0.2898 0.8488 9.4513 19 6 0.4127 -0.5108 9.4522 20 1 -0.2539 -1.2650 9.0340 21 6 0.7760 -0.8884 10.8652 22 1 0.5308 -0.2249 11.6814 23 6 1.4212 -2.0807 11.1160 24 7 1.7193 -2.8889 10.1221 25 14 1.8721 -2.5484 12.8674 26 1 0.6393 -2.6273 13.6916 27 1 2.5525 -3.8683 12.8677 28 1 2.7823 -1.5216 13.4352 29 6 1.6799 -0.4274 8.6031 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6766 -1.7490 -1.2493 34 1 1.6765 -0.2075 -2.1393 35 1 3.9332 -1.2355 -2.1391 36 1 3.9336 0.3056 -1.2489 37 1 3.7156 -2.4711 0.0000 38 1 5.1694 -1.4444 0.0002 39 1 3.9332 0.3052 1.2497 40 1 3.9328 -1.2361 2.1395 41 1 1.9648 0.9985 2.5443 42 1 0.4438 0.0783 2.4548 43 1 1.5002 -1.7887 3.6986 44 1 3.0212 -0.8684 3.7881 45 1 0.9513 0.7299 4.8536 46 1 1.1859 2.1537 7.5043 47 1 0.2898 1.4902 6.1152 48 1 -1.2092 2.1755 8.0235 49 1 -1.3446 0.4481 7.6150 50 1 0.3861 1.6070 9.8471 51 1 -1.1822 0.7967 10.0748 52 1 2.1736 -3.7275 10.2985 53 1 2.1275 -1.4177 8.5189 54 1 2.3868 0.2566 9.0729 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595504422.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:57 Heat of formation + Delta-G solvation = -87.800322 kcal Electronic energy + Delta-G solvation = -28247.414885 eV Core-core repulsion = 24602.472084 eV Total energy + Delta-G solvation = -3644.942801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.30051 -40.13604 -38.51717 -36.31681 -35.28042 -33.88558 -33.44484 -32.81266 -31.49079 -29.25857 -27.19127 -26.89043 -25.94188 -24.44285 -23.42813 -22.22831 -21.84328 -21.54348 -20.61789 -20.20463 -19.02376 -18.20173 -17.28966 -16.73569 -16.54491 -16.00950 -15.72719 -15.45715 -15.28780 -15.18683 -15.08930 -14.88519 -14.63438 -14.55433 -14.26439 -14.17771 -13.79268 -13.51475 -13.22941 -12.90031 -12.84427 -12.70709 -12.62951 -12.58613 -12.30531 -12.28214 -12.23360 -12.17661 -11.85483 -11.75327 -11.66171 -11.61481 -11.26651 -11.22519 -10.94908 -10.87011 -10.74958 -10.71640 -10.50298 -10.11613 -9.23603 -8.08563 -6.26788 1.40968 1.42925 1.51307 1.82495 2.25910 2.42724 3.07210 3.20809 3.69290 3.77763 3.84814 4.04232 4.10567 4.13929 4.17489 4.28953 4.38000 4.39434 4.47788 4.54658 4.61150 4.62041 4.67523 4.72234 4.73532 4.78205 4.82603 4.86706 4.89874 4.98219 5.04562 5.07062 5.11545 5.16133 5.22990 5.25187 5.27837 5.29095 5.33244 5.35750 5.36553 5.43047 5.49921 5.55631 5.56808 5.61957 5.67264 5.69766 5.90933 6.00033 6.19610 6.37316 6.86840 7.16923 7.43312 7.71314 8.94239 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.021713 B = 0.002415 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.261191 B =11591.531398 C =12491.295632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.080 4.080 3 H 0.076 0.924 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.121 4.121 7 C -0.119 4.119 8 C -0.074 4.074 9 H 0.062 0.938 10 C -0.114 4.114 11 C 0.138 3.862 12 N -0.733 5.733 13 C 0.690 3.310 14 O -0.643 6.643 15 N -0.628 5.628 16 C 0.110 3.890 17 C -0.126 4.126 18 C -0.105 4.105 19 C 0.038 3.962 20 H -0.018 1.018 21 C -0.536 4.536 22 H 0.063 0.937 23 C 0.007 3.993 24 N -0.915 5.915 25 Si 0.959 3.041 26 H -0.268 1.268 27 H -0.290 1.290 28 H -0.266 1.266 29 C 0.142 3.858 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.040 0.960 44 H 0.050 0.950 45 H 0.408 0.592 46 H 0.081 0.919 47 H 0.101 0.899 48 H 0.106 0.894 49 H 0.047 0.953 50 H 0.059 0.941 51 H 0.051 0.949 52 H 0.259 0.741 53 H 0.074 0.926 54 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.504 12.258 -23.747 26.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.098 4.098 3 H 0.094 0.906 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.158 4.158 7 C -0.157 4.157 8 C -0.093 4.093 9 H 0.080 0.920 10 C -0.151 4.151 11 C 0.014 3.986 12 N -0.393 5.393 13 C 0.391 3.609 14 O -0.524 6.524 15 N -0.364 5.364 16 C -0.012 4.012 17 C -0.164 4.164 18 C -0.142 4.142 19 C 0.018 3.982 20 H 0.000 1.000 21 C -0.575 4.575 22 H 0.082 0.918 23 C -0.192 4.192 24 N -0.554 5.554 25 Si 0.784 3.216 26 H -0.193 1.193 27 H -0.216 1.216 28 H -0.191 1.191 29 C 0.019 3.981 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.247 0.753 46 H 0.099 0.901 47 H 0.119 0.881 48 H 0.124 0.876 49 H 0.066 0.934 50 H 0.077 0.923 51 H 0.070 0.930 52 H 0.068 0.932 53 H 0.092 0.908 54 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.017 11.331 -23.722 26.308 hybrid contribution 0.259 -0.811 1.233 1.498 sum -0.758 10.519 -22.489 24.839 Atomic orbital electron populations 1.21920 0.94925 1.01764 1.02247 1.21088 0.95638 0.99551 0.93525 0.90589 1.21594 0.95376 1.00528 0.97608 1.21522 0.95778 1.00803 0.97341 1.21538 1.00266 0.99225 0.94821 1.21651 0.95255 1.01082 0.97684 1.21065 0.95173 0.99395 0.93711 0.91976 1.21846 1.02468 0.99455 0.91350 1.21270 0.98392 0.95606 0.83293 1.45126 1.61632 1.29103 1.03459 1.16273 0.79536 0.83327 0.81748 1.90883 1.51876 1.23217 1.86470 1.47682 1.58057 1.25384 1.05266 1.21870 0.92897 0.85255 1.01199 1.21909 0.96895 1.02518 0.95064 1.21503 0.99471 0.96856 0.96405 1.18840 0.92396 0.93085 0.93856 0.99990 1.21497 1.38346 1.04195 0.93435 0.91837 1.25943 0.95747 0.96502 1.01018 1.70117 1.41306 1.11233 1.32744 0.85602 0.78652 0.77263 0.80106 1.19257 1.21589 1.19055 1.21485 0.98473 0.99135 0.79015 0.91964 0.92031 0.93274 0.92563 0.91149 0.91685 0.91665 0.92694 0.92026 0.91348 0.93233 0.89834 0.89739 0.94197 0.93161 0.75290 0.90120 0.88109 0.87585 0.93411 0.92275 0.93015 0.93226 0.90774 0.94717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.85 71.98 0.64 -1.10 16 2 C -0.08 -0.97 2.25 -10.79 -0.02 -0.99 16 3 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 4 C -0.11 -1.34 5.20 30.60 0.16 -1.18 16 5 C -0.12 -1.42 5.92 30.60 0.18 -1.23 16 6 C -0.12 -1.81 5.92 30.60 0.18 -1.63 16 7 C -0.12 -1.99 4.96 30.58 0.15 -1.83 16 8 C -0.07 -1.16 1.71 -10.81 -0.02 -1.18 16 9 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 10 C -0.11 -1.86 4.58 30.60 0.14 -1.72 16 11 C 0.14 3.66 5.43 86.38 0.47 4.13 16 12 N -0.73 -21.78 5.47 -478.54 -2.62 -24.40 16 13 C 0.69 29.73 8.29 179.06 1.49 31.22 16 14 O -0.64 -35.46 15.77 -3.97 -0.06 -35.52 16 15 N -0.63 -26.04 2.98 -837.72 -2.49 -28.54 16 16 C 0.11 3.10 6.39 86.36 0.55 3.66 16 17 C -0.13 -3.70 6.08 30.67 0.19 -3.52 16 18 C -0.10 -4.08 5.11 30.62 0.16 -3.92 16 19 C 0.04 1.95 2.24 -11.61 -0.03 1.93 16 20 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 21 C -0.54 -30.15 8.56 25.60 0.22 -29.93 16 22 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 23 C 0.01 0.42 5.30 84.65 0.45 0.86 16 24 N -0.92 -57.49 11.39 21.45 0.24 -57.25 16 25 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 27 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 28 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 29 C 0.14 7.35 5.39 86.22 0.46 7.82 16 30 H 0.06 0.68 6.32 -2.39 -0.02 0.67 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.05 1.01 6.56 -2.38 -0.02 1.00 16 41 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.08 1.22 6.17 -2.39 -0.01 1.20 16 43 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.05 1.47 6.56 -2.39 -0.02 1.45 16 45 H 0.41 8.80 5.96 -92.71 -0.55 8.25 16 46 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.10 2.02 5.64 -2.39 -0.01 2.00 16 48 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 51 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 52 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 53 H 0.07 4.63 5.11 -2.39 -0.01 4.62 16 54 H 0.03 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -76.44 399.89 2.76 -73.68 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 0.30 Total: 23.49 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 5.36 Total: 1.37 kcal Atomic # 7 Polarization: -105.32 SS G_CDS: -4.87 Total: -110.18 kcal Atomic # 8 Polarization: -35.46 SS G_CDS: -0.06 Total: -35.52 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -76.44 2.76 -73.68 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595504422.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.121 kcal (2) G-P(sol) polarization free energy of solvation -76.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds