Wall clock time and date at job start Tue Mar 31 2020 15:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.46934 * 2 1 4 4 C 1.53001 * 109.47262 * 240.00639 * 2 1 3 5 5 C 1.53004 * 109.46541 * 299.99386 * 4 2 1 6 6 C 1.52998 * 109.47261 * 300.00002 * 5 4 2 7 7 C 1.52993 * 109.47046 * 60.00149 * 6 5 4 8 8 C 1.52996 * 109.47391 * 299.99927 * 7 6 5 9 9 H 1.09004 * 109.47361 * 300.00370 * 8 7 6 10 10 C 1.53001 * 109.47604 * 179.97438 * 8 7 6 11 11 C 1.53005 * 109.46847 * 64.99867 * 10 8 7 12 12 N 1.46499 * 109.46809 * 180.02562 * 11 10 8 13 13 C 1.34777 * 119.99669 * 180.02562 * 12 11 10 14 14 O 1.21584 * 120.00483 * 354.88734 * 13 12 11 15 15 N 1.34787 * 119.99764 * 174.89026 * 13 12 11 16 16 C 1.46921 * 120.62796 * 4.75258 * 15 13 12 17 17 C 1.52766 * 109.00597 * 233.58562 * 16 15 13 18 18 C 1.53041 * 109.38468 * 305.59050 * 17 16 15 19 19 C 1.53044 * 109.53890 * 61.23746 * 18 17 16 20 20 H 1.09004 * 109.52080 * 58.60197 * 19 18 17 21 21 C 1.50701 * 109.49910 * 178.68646 * 19 18 17 22 22 H 1.07994 * 120.00094 * 34.91118 * 21 19 18 23 23 C 1.37874 * 119.99705 * 214.91251 * 21 19 18 24 24 N 1.31518 * 120.00092 * 174.98989 * 23 21 19 25 25 Si 1.86804 * 120.00307 * 354.98182 * 23 21 19 26 26 H 1.48494 * 109.47112 * 94.95116 * 25 23 21 27 27 H 1.48502 * 109.47064 * 214.95373 * 25 23 21 28 28 H 1.48505 * 109.46848 * 334.95227 * 25 23 21 29 29 C 1.46923 * 120.62741 * 185.03714 * 15 13 12 30 30 H 1.09003 * 109.46929 * 299.99471 * 1 2 3 31 31 H 1.09003 * 109.47567 * 60.00089 * 1 2 3 32 32 H 1.09004 * 109.46934 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47430 * 59.99190 * 4 2 1 34 34 H 1.08998 * 109.46968 * 179.97438 * 4 2 1 35 35 H 1.08998 * 109.47144 * 60.00530 * 5 4 2 36 36 H 1.09008 * 109.46441 * 180.02562 * 5 4 2 37 37 H 1.09008 * 109.47287 * 299.99775 * 6 5 4 38 38 H 1.08999 * 109.47167 * 180.02562 * 6 5 4 39 39 H 1.09003 * 109.47385 * 179.97438 * 7 6 5 40 40 H 1.09004 * 109.47170 * 60.00414 * 7 6 5 41 41 H 1.08995 * 109.47708 * 185.00030 * 10 8 7 42 42 H 1.08998 * 109.47002 * 305.00271 * 10 8 7 43 43 H 1.08999 * 109.46988 * 300.00048 * 11 10 8 44 44 H 1.08998 * 109.46991 * 60.00397 * 11 10 8 45 45 H 0.97003 * 120.00161 * 0.02562 * 12 11 10 46 46 H 1.09000 * 109.59090 * 353.41751 * 16 15 13 47 47 H 1.09003 * 109.58728 * 113.85174 * 16 15 13 48 48 H 1.09000 * 109.56405 * 185.55603 * 17 16 15 49 49 H 1.08997 * 109.39066 * 65.51461 * 17 16 15 50 50 H 1.09005 * 109.45875 * 301.22580 * 18 17 16 51 51 H 1.08993 * 109.45512 * 181.25471 * 18 17 16 52 52 H 0.96997 * 120.00313 * 179.97438 * 24 23 21 53 53 H 1.09002 * 109.58296 * 246.15111 * 29 15 13 54 54 H 1.08997 * 109.59263 * 6.43016 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5300 -2.1637 -1.2493 6 6 2.0401 -2.8849 -0.0001 7 6 1.5301 -2.1637 1.2491 8 6 2.0400 -0.7212 1.2492 9 1 3.1301 -0.7211 1.2491 10 6 1.5295 0.0002 2.4981 11 6 2.1392 -0.6447 3.7445 12 7 1.6499 0.0457 4.9404 13 6 2.0563 -0.3526 6.1621 14 8 2.7542 -1.3414 6.2783 15 7 1.6890 0.3452 7.2553 16 6 0.7623 1.4797 7.1426 17 6 1.3968 2.7069 7.7947 18 6 1.8026 2.3665 9.2305 19 6 2.8350 1.2367 9.2164 20 1 3.7045 1.5452 8.6360 21 6 3.2580 0.9242 10.6287 22 1 2.5430 0.9960 11.4349 23 6 4.5577 0.5466 10.8914 24 7 4.9528 0.3694 12.1333 25 14 5.7575 0.2862 9.4835 26 1 6.5374 1.5302 9.2613 27 1 6.6832 -0.8248 9.8210 28 1 5.0056 -0.0538 8.2488 29 6 2.2125 -0.0105 8.5812 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6766 -0.2073 -2.1392 34 1 3.1300 -0.7207 -1.2495 35 1 0.4401 -2.1637 -1.2493 36 1 1.8938 -2.6775 -2.1391 37 1 3.1302 -2.8849 -0.0001 38 1 1.6772 -3.9127 -0.0003 39 1 1.8931 -2.6778 2.1391 40 1 0.4401 -2.1639 1.2492 41 1 1.8178 1.0504 2.4545 42 1 0.4432 -0.0768 2.5436 43 1 1.8508 -1.6949 3.7882 44 1 3.2255 -0.5677 3.6990 45 1 1.0334 0.7896 4.8530 46 1 0.5651 1.6874 6.0909 47 1 -0.1715 1.2407 7.6515 48 1 0.6790 3.5272 7.8043 49 1 2.2794 3.0024 7.2276 50 1 0.9234 2.0478 9.7905 51 1 2.2351 3.2477 9.7042 52 1 5.8671 0.1034 12.3181 53 1 1.3993 -0.3736 9.2097 54 1 2.9699 -0.7877 8.4787 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595504423.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:01 Heat of formation + Delta-G solvation = -86.011394 kcal Electronic energy + Delta-G solvation = -28384.514936 eV Core-core repulsion = 24739.649709 eV Total energy + Delta-G solvation = -3644.865227 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.43253 -40.40132 -38.64375 -36.41578 -35.26766 -33.88693 -33.19099 -32.64165 -32.08002 -29.37486 -27.45589 -27.00225 -26.03894 -24.41499 -23.37716 -22.95986 -21.88807 -21.59925 -20.36734 -19.34388 -19.22330 -18.69028 -17.41664 -16.84361 -16.56375 -16.43160 -15.95053 -15.57658 -15.36470 -15.22984 -15.08826 -14.95661 -14.76752 -14.55099 -14.31114 -14.06665 -13.82119 -13.69307 -13.56735 -13.10104 -13.05610 -12.80021 -12.63959 -12.57371 -12.52817 -12.37710 -12.06398 -12.03951 -11.90387 -11.75753 -11.63614 -11.49683 -11.34591 -11.10915 -11.04530 -10.96671 -10.80962 -10.76692 -10.72797 -10.18347 -9.36924 -8.35652 -6.36951 1.23042 1.31601 1.46053 1.69846 2.16239 2.28334 2.96015 3.05174 3.69548 3.75913 3.84539 4.00650 4.07147 4.15191 4.15992 4.20820 4.38939 4.40319 4.47401 4.50128 4.51654 4.53144 4.60239 4.63401 4.69098 4.72627 4.78567 4.81553 4.85323 4.97440 4.98593 5.02833 5.05865 5.11608 5.13084 5.14699 5.19368 5.24843 5.26407 5.30601 5.37730 5.44919 5.45639 5.48134 5.54841 5.57742 5.59620 5.66680 5.72138 5.73489 6.06520 6.29295 6.71786 7.05240 7.29459 7.58689 8.80835 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.020667 B = 0.002602 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.511295 B =10757.709151 C =11504.588261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.082 4.082 3 H 0.073 0.927 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.121 4.121 7 C -0.120 4.120 8 C -0.075 4.075 9 H 0.063 0.937 10 C -0.113 4.113 11 C 0.137 3.863 12 N -0.732 5.732 13 C 0.693 3.307 14 O -0.646 6.646 15 N -0.629 5.629 16 C 0.111 3.889 17 C -0.128 4.128 18 C -0.101 4.101 19 C 0.005 3.995 20 H 0.020 0.980 21 C -0.508 4.508 22 H 0.045 0.955 23 C 0.023 3.977 24 N -0.941 5.941 25 Si 0.929 3.071 26 H -0.266 1.266 27 H -0.289 1.289 28 H -0.263 1.263 29 C 0.141 3.859 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.053 0.947 44 H 0.041 0.959 45 H 0.410 0.590 46 H 0.105 0.895 47 H 0.083 0.917 48 H 0.107 0.893 49 H 0.055 0.945 50 H 0.057 0.943 51 H 0.052 0.948 52 H 0.266 0.734 53 H 0.057 0.943 54 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.845 2.799 -30.303 33.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.100 4.100 3 H 0.091 0.909 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.158 4.158 7 C -0.157 4.157 8 C -0.094 4.094 9 H 0.081 0.919 10 C -0.150 4.150 11 C 0.013 3.987 12 N -0.391 5.391 13 C 0.394 3.606 14 O -0.529 6.529 15 N -0.365 5.365 16 C -0.011 4.011 17 C -0.166 4.166 18 C -0.139 4.139 19 C -0.015 4.015 20 H 0.039 0.961 21 C -0.546 4.546 22 H 0.063 0.937 23 C -0.175 4.175 24 N -0.581 5.581 25 Si 0.755 3.245 26 H -0.192 1.192 27 H -0.216 1.216 28 H -0.187 1.187 29 C 0.018 3.982 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.072 0.928 44 H 0.060 0.940 45 H 0.250 0.750 46 H 0.123 0.877 47 H 0.101 0.899 48 H 0.125 0.875 49 H 0.074 0.926 50 H 0.076 0.924 51 H 0.071 0.929 52 H 0.075 0.925 53 H 0.076 0.924 54 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.202 2.060 -30.127 32.570 hybrid contribution 1.037 -0.362 0.354 1.154 sum -11.164 1.697 -29.773 31.843 Atomic orbital electron populations 1.21987 0.94710 1.02181 1.02013 1.21069 0.96438 0.98940 0.93555 0.90900 1.21564 1.00317 0.95672 0.97665 1.21558 1.01155 0.95610 0.97286 1.21527 1.00429 0.98973 0.94880 1.21688 1.01307 0.95178 0.97564 1.21050 0.99907 0.94757 0.93713 0.91887 1.21819 1.01643 1.00214 0.91361 1.21308 0.97880 0.96347 0.83201 1.45136 1.51957 1.38598 1.03444 1.16226 0.80129 0.82514 0.81704 1.90854 1.45831 1.29899 1.86292 1.47638 1.49169 1.33533 1.06156 1.21823 0.92044 0.84864 1.02367 1.21883 1.01442 0.97892 0.95373 1.21451 0.98133 0.97637 0.96669 1.19452 0.95289 0.93108 0.93603 0.96135 1.21222 0.95561 1.44912 0.92954 0.93685 1.25757 1.00058 0.94678 0.97053 1.70016 1.18572 1.49234 1.20287 0.86010 0.79356 0.78168 0.80980 1.19158 1.21564 1.18741 1.21782 0.97230 0.98723 0.80505 0.92081 0.92461 0.92216 0.91318 0.92541 0.91327 0.91977 0.92745 0.92105 0.93219 0.91020 0.90068 0.89562 0.92839 0.94031 0.75047 0.87715 0.89913 0.87489 0.92569 0.92405 0.92878 0.92488 0.92444 0.93840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.15 71.98 0.59 -0.80 16 2 C -0.08 -0.86 2.72 -10.80 -0.03 -0.89 16 3 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 4 C -0.11 -1.21 5.45 30.60 0.17 -1.04 16 5 C -0.12 -1.29 5.65 30.59 0.17 -1.12 16 6 C -0.12 -1.61 5.92 30.59 0.18 -1.43 16 7 C -0.12 -1.74 4.68 30.59 0.14 -1.60 16 8 C -0.08 -1.01 1.96 -10.80 -0.02 -1.03 16 9 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 10 C -0.11 -1.53 4.29 30.60 0.13 -1.40 16 11 C 0.14 3.11 5.44 86.38 0.47 3.58 16 12 N -0.73 -18.54 5.47 -478.52 -2.62 -21.16 16 13 C 0.69 25.90 8.30 179.05 1.49 27.38 16 14 O -0.65 -31.17 15.78 -3.98 -0.06 -31.23 16 15 N -0.63 -22.42 2.98 -837.74 -2.50 -24.92 16 16 C 0.11 2.62 6.40 86.22 0.55 3.17 16 17 C -0.13 -3.23 6.06 30.53 0.19 -3.04 16 18 C -0.10 -3.65 5.15 30.62 0.16 -3.49 16 19 C 0.01 0.25 1.79 -11.46 -0.02 0.23 16 20 H 0.02 1.00 5.60 -2.38 -0.01 0.99 16 21 C -0.51 -28.90 8.86 25.60 0.23 -28.67 16 22 H 0.04 2.77 8.06 -2.91 -0.02 2.75 16 23 C 0.02 1.36 5.47 84.65 0.46 1.82 16 24 N -0.94 -59.60 13.96 21.45 0.30 -59.30 16 25 Si 0.93 48.09 26.62 68.60 1.83 49.92 16 26 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 27 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 28 H -0.26 -13.95 5.98 99.48 0.59 -13.36 16 29 C 0.14 6.33 5.50 86.36 0.48 6.81 16 30 H 0.06 0.51 6.54 -2.39 -0.02 0.50 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.58 4.81 -2.39 -0.01 0.57 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.07 0.70 6.43 -2.39 -0.02 0.68 16 36 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.05 0.89 6.57 -2.39 -0.02 0.88 16 40 H 0.07 0.95 6.43 -2.38 -0.02 0.94 16 41 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.09 0.97 6.70 -2.39 -0.02 0.95 16 43 H 0.05 1.37 6.57 -2.39 -0.02 1.36 16 44 H 0.04 1.11 8.14 -2.39 -0.02 1.10 16 45 H 0.41 7.15 5.93 -92.71 -0.55 6.60 16 46 H 0.10 1.62 5.57 -2.39 -0.01 1.61 16 47 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.11 1.89 8.14 -2.39 -0.02 1.88 16 49 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 51 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 52 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 53 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 54 H 0.04 2.28 5.92 -2.39 -0.01 2.27 16 Total: -1.00 -76.37 390.50 2.48 -73.89 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.21 Total: 14.33 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 5.33 Total: -1.52 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -4.81 Total: -105.38 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.06 Total: -31.23 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 1.83 Total: 49.92 kcal Total: -76.37 2.48 -73.89 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595504423.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.125 kcal (2) G-P(sol) polarization free energy of solvation -76.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds