Wall clock time and date at job start Tue Mar 31 2020 15:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47412 * 2 1 4 4 C 1.53000 * 109.47895 * 239.99625 * 2 1 3 5 5 C 1.52995 * 109.47895 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.46783 * 60.00017 * 5 4 2 7 7 C 1.52995 * 109.47249 * 300.00232 * 6 5 4 8 8 C 1.52995 * 109.47417 * 60.00156 * 7 6 5 9 9 H 1.08995 * 109.47412 * 59.99771 * 8 7 6 10 10 C 1.53000 * 109.47556 * 180.02562 * 8 7 6 11 11 C 1.53002 * 109.46665 * 294.99851 * 10 8 7 12 12 N 1.46503 * 109.47316 * 180.02562 * 11 10 8 13 13 C 1.34775 * 120.00155 * 179.72348 * 12 11 10 14 14 O 1.21580 * 120.00123 * 355.17909 * 13 12 11 15 15 N 1.34771 * 119.99654 * 175.17770 * 13 12 11 16 16 C 1.46925 * 120.63577 * 5.04491 * 15 13 12 17 17 C 1.53193 * 108.77522 * 233.58662 * 16 15 13 18 18 C 1.53032 * 109.31630 * 305.36314 * 17 16 15 19 19 C 1.53046 * 109.53696 * 61.36517 * 18 17 16 20 20 H 1.08994 * 109.49478 * 58.59077 * 19 18 17 21 21 C 1.50704 * 109.49310 * 178.65405 * 19 18 17 22 22 H 1.07997 * 120.00742 * 5.39513 * 21 19 18 23 23 C 1.37879 * 119.99593 * 185.39312 * 21 19 18 24 24 N 1.31519 * 120.00226 * 355.12693 * 23 21 19 25 25 Si 1.86803 * 120.00209 * 175.11864 * 23 21 19 26 26 H 1.48501 * 109.46636 * 94.99907 * 25 23 21 27 27 H 1.48497 * 109.47117 * 215.00232 * 25 23 21 28 28 H 1.48496 * 109.46876 * 335.00525 * 25 23 21 29 29 C 1.46929 * 120.62645 * 184.76859 * 15 13 12 30 30 H 1.08990 * 109.47389 * 299.99948 * 1 2 3 31 31 H 1.09000 * 109.46817 * 60.00373 * 1 2 3 32 32 H 1.09001 * 109.47009 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46476 * 59.99531 * 4 2 1 34 34 H 1.08995 * 109.46897 * 300.00690 * 4 2 1 35 35 H 1.09001 * 109.47009 * 300.00318 * 5 4 2 36 36 H 1.08990 * 109.47389 * 180.02562 * 5 4 2 37 37 H 1.09000 * 109.46869 * 180.02562 * 6 5 4 38 38 H 1.09001 * 109.47102 * 60.00358 * 6 5 4 39 39 H 1.09001 * 109.47171 * 300.00083 * 7 6 5 40 40 H 1.09000 * 109.47244 * 180.02562 * 7 6 5 41 41 H 1.09000 * 109.47215 * 175.00564 * 10 8 7 42 42 H 1.08998 * 109.47351 * 54.99683 * 10 8 7 43 43 H 1.08997 * 109.47135 * 59.99770 * 11 10 8 44 44 H 1.09006 * 109.46948 * 299.99708 * 11 10 8 45 45 H 0.96998 * 119.99679 * 0.02562 * 12 11 10 46 46 H 1.08998 * 109.58247 * 353.37335 * 16 15 13 47 47 H 1.08991 * 109.58902 * 113.65462 * 16 15 13 48 48 H 1.09004 * 109.49836 * 65.31836 * 17 16 15 49 49 H 1.09003 * 109.49661 * 185.41024 * 17 16 15 50 50 H 1.09000 * 109.46589 * 181.39062 * 18 17 16 51 51 H 1.09003 * 109.46041 * 301.34890 * 18 17 16 52 52 H 0.96994 * 120.00344 * 180.02562 * 24 23 21 53 53 H 1.09005 * 109.58614 * 246.19700 * 29 15 13 54 54 H 1.08998 * 109.59020 * 6.62317 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4416 -0.0001 7 6 3.5705 -0.7203 1.2490 8 6 2.0405 -0.7209 1.2494 9 1 1.6776 -1.7486 1.2496 10 6 1.5304 0.0010 2.4982 11 6 1.9357 -0.7884 3.7447 12 7 1.4468 -0.0976 4.9406 13 6 1.6828 -0.6160 6.1620 14 8 2.2238 -1.6996 6.2684 15 7 1.3190 0.0668 7.2656 16 6 0.5667 1.3239 7.1541 17 6 1.3078 2.4130 7.9361 18 6 1.5316 1.9400 9.3742 19 6 2.3955 0.6766 9.3688 20 1 3.3477 0.8891 8.8829 21 6 2.6428 0.2306 10.7869 22 1 2.1556 0.7389 11.6058 23 6 3.4913 -0.8266 11.0389 24 7 4.0095 -1.5067 10.0395 25 14 3.9051 -1.2930 12.7998 26 1 2.9952 -2.3761 13.2518 27 1 5.3109 -1.7663 12.8692 28 1 3.7379 -0.1074 13.6782 29 6 1.6619 -0.4350 8.6032 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6767 -0.2075 -2.1392 34 1 1.6768 -1.7489 -1.2491 35 1 3.9330 0.3071 -1.2497 36 1 3.9334 -1.2342 -2.1395 37 1 5.1706 -1.4408 -0.0001 38 1 3.7176 -2.4694 0.0001 39 1 3.9334 0.3075 1.2488 40 1 3.9345 -1.2336 2.1391 41 1 0.4441 0.0786 2.4547 42 1 1.9647 0.9997 2.5435 43 1 3.0220 -0.8662 3.7882 44 1 1.5014 -1.7871 3.6994 45 1 0.9495 0.7306 4.8530 46 1 0.4922 1.6133 6.1059 47 1 -0.4326 1.1897 7.5680 48 1 2.2703 2.6091 7.4636 49 1 0.7121 3.3258 7.9419 50 1 2.0369 2.7230 9.9396 51 1 0.5700 1.7204 9.8381 52 1 4.6060 -2.2506 10.2168 53 1 0.7508 -0.7090 9.1354 54 1 2.3101 -1.3065 8.5116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595504424.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:05 Heat of formation + Delta-G solvation = -88.407372 kcal Electronic energy + Delta-G solvation = -28276.395252 eV Core-core repulsion = 24631.426127 eV Total energy + Delta-G solvation = -3644.969125 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.30133 -40.13459 -38.49289 -36.32516 -35.26104 -33.88489 -33.43937 -32.81800 -31.49040 -29.26344 -27.18802 -26.88956 -25.93850 -24.44285 -23.43016 -22.23004 -21.84734 -21.53687 -20.62251 -20.19367 -19.05809 -18.20282 -17.29368 -16.73615 -16.53927 -16.00671 -15.72284 -15.50871 -15.22208 -15.18504 -15.12221 -14.95075 -14.69570 -14.41435 -14.29096 -14.17088 -13.77713 -13.53609 -13.20545 -12.91369 -12.89800 -12.68305 -12.63007 -12.57846 -12.33231 -12.30015 -12.22563 -12.17192 -11.83185 -11.75406 -11.65930 -11.61819 -11.26740 -11.22245 -10.93236 -10.87794 -10.75121 -10.72537 -10.53741 -10.11519 -9.23864 -8.10494 -6.26832 1.40693 1.41015 1.52787 1.80911 2.27128 2.42459 3.05972 3.20392 3.69005 3.77484 3.84650 4.04383 4.10837 4.13366 4.17971 4.28884 4.37684 4.39679 4.47377 4.54503 4.61009 4.61653 4.66982 4.71902 4.73814 4.78500 4.81399 4.85812 4.90557 4.98268 5.04437 5.07124 5.11727 5.15871 5.22910 5.25132 5.26952 5.29566 5.33166 5.35430 5.36121 5.42864 5.49820 5.55679 5.57399 5.61364 5.66082 5.69648 5.89327 5.97590 6.18554 6.36592 6.87240 7.16175 7.43123 7.70214 8.93776 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.020483 B = 0.002461 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.676832 B =11373.393636 C =12236.694506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 H 0.073 0.927 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.121 4.121 7 C -0.121 4.121 8 C -0.073 4.073 9 H 0.065 0.935 10 C -0.114 4.114 11 C 0.138 3.862 12 N -0.734 5.734 13 C 0.691 3.309 14 O -0.644 6.644 15 N -0.628 5.628 16 C 0.110 3.890 17 C -0.125 4.125 18 C -0.105 4.105 19 C 0.039 3.961 20 H -0.013 1.013 21 C -0.535 4.535 22 H 0.063 0.937 23 C 0.007 3.993 24 N -0.916 5.916 25 Si 0.958 3.042 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.261 1.261 29 C 0.145 3.855 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.044 0.956 44 H 0.046 0.954 45 H 0.408 0.592 46 H 0.101 0.899 47 H 0.079 0.921 48 H 0.049 0.951 49 H 0.105 0.895 50 H 0.052 0.948 51 H 0.057 0.943 52 H 0.259 0.741 53 H 0.035 0.965 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.447 8.192 -23.535 26.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.099 4.099 3 H 0.092 0.908 4 C -0.150 4.150 5 C -0.155 4.155 6 C -0.158 4.158 7 C -0.158 4.158 8 C -0.092 4.092 9 H 0.084 0.916 10 C -0.151 4.151 11 C 0.014 3.986 12 N -0.393 5.393 13 C 0.392 3.608 14 O -0.526 6.526 15 N -0.364 5.364 16 C -0.012 4.012 17 C -0.163 4.163 18 C -0.143 4.143 19 C 0.020 3.980 20 H 0.005 0.995 21 C -0.573 4.573 22 H 0.081 0.919 23 C -0.192 4.192 24 N -0.555 5.555 25 Si 0.783 3.217 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.185 1.185 29 C 0.022 3.978 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.247 0.753 46 H 0.119 0.881 47 H 0.098 0.902 48 H 0.068 0.932 49 H 0.124 0.876 50 H 0.070 0.930 51 H 0.076 0.924 52 H 0.068 0.932 53 H 0.053 0.947 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.937 7.289 -23.508 25.860 hybrid contribution 0.640 -0.619 1.237 1.524 sum -7.296 6.670 -22.271 24.366 Atomic orbital electron populations 1.21909 0.94711 1.01876 1.02261 1.21094 0.95803 0.99459 0.93519 0.90830 1.21588 0.95223 1.00624 0.97599 1.21524 0.95929 1.00717 0.97307 1.21534 1.00183 0.99305 0.94787 1.21668 0.95535 1.00939 0.97685 1.21070 0.94913 0.99535 0.93717 0.91640 1.21847 1.02598 0.99319 0.91353 1.21270 0.98167 0.95820 0.83316 1.45122 1.61686 1.29016 1.03519 1.16265 0.79274 0.83516 0.81750 1.90867 1.51596 1.23651 1.86514 1.47694 1.58474 1.24987 1.05248 1.21871 0.95086 0.82657 1.01600 1.21903 1.00598 0.98506 0.95287 1.21512 0.99359 0.97000 0.96421 1.18999 0.92962 0.92131 0.93944 0.99480 1.21530 1.27001 1.15711 0.93106 0.91862 1.25938 0.95931 0.96287 1.01035 1.70137 1.32294 1.20413 1.32608 0.85544 0.77225 0.78655 0.80253 1.20250 1.21315 1.18456 1.21663 0.97295 0.99846 0.79002 0.91914 0.92057 0.93059 0.91130 0.92356 0.91845 0.91619 0.92225 0.92480 0.91659 0.93414 0.89345 0.90236 0.93797 0.93601 0.75271 0.88094 0.90230 0.93217 0.87634 0.92950 0.92387 0.93238 0.94692 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.85 71.98 0.64 -1.00 16 2 C -0.08 -0.99 2.25 -10.79 -0.02 -1.01 16 3 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 4 C -0.11 -1.33 5.20 30.59 0.16 -1.17 16 5 C -0.12 -1.48 5.92 30.59 0.18 -1.30 16 6 C -0.12 -1.90 5.92 30.59 0.18 -1.72 16 7 C -0.12 -2.15 4.96 30.59 0.15 -2.00 16 8 C -0.07 -1.16 1.72 -10.79 -0.02 -1.18 16 9 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 10 C -0.11 -1.88 4.58 30.59 0.14 -1.74 16 11 C 0.14 3.70 5.43 86.38 0.47 4.17 16 12 N -0.73 -21.91 5.47 -478.54 -2.62 -24.53 16 13 C 0.69 29.73 8.30 179.06 1.49 31.22 16 14 O -0.64 -35.34 15.78 -3.97 -0.06 -35.40 16 15 N -0.63 -25.96 2.97 -836.08 -2.48 -28.44 16 16 C 0.11 3.09 6.43 86.36 0.56 3.64 16 17 C -0.12 -3.62 6.08 30.67 0.19 -3.43 16 18 C -0.11 -4.07 5.11 30.62 0.16 -3.91 16 19 C 0.04 2.01 2.20 -11.31 -0.02 1.98 16 20 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 21 C -0.53 -29.95 8.49 25.60 0.22 -29.73 16 22 H 0.06 3.38 7.75 -2.91 -0.02 3.36 16 23 C 0.01 0.43 5.36 84.65 0.45 0.88 16 24 N -0.92 -57.30 11.63 21.45 0.25 -57.05 16 25 Si 0.96 45.09 29.54 68.60 2.03 47.12 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 27 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 28 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 29 C 0.15 7.48 5.48 86.51 0.47 7.96 16 30 H 0.06 0.65 6.32 -2.39 -0.02 0.63 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.05 1.05 6.57 -2.39 -0.02 1.03 16 41 H 0.09 1.22 6.17 -2.39 -0.01 1.20 16 42 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.04 1.36 6.57 -2.39 -0.02 1.35 16 44 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 45 H 0.41 8.86 5.93 -92.71 -0.55 8.31 16 46 H 0.10 2.00 5.57 -2.39 -0.01 1.99 16 47 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 49 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 50 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 51 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 52 H 0.26 15.59 8.31 -92.71 -0.77 14.81 16 53 H 0.03 1.78 8.14 -2.38 -0.02 1.76 16 54 H 0.07 4.15 5.41 -2.39 -0.01 4.14 16 Total: -1.00 -76.11 400.43 2.80 -73.31 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.30 Total: 23.35 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 5.38 Total: 1.65 kcal Atomic # 7 Polarization: -105.17 SS G_CDS: -4.85 Total: -110.02 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -0.06 Total: -35.40 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -76.11 2.80 -73.31 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595504424.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.099 kcal (2) G-P(sol) polarization free energy of solvation -76.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds