Wall clock time and date at job start Tue Mar 31 2020 15:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47037 * 2 1 4 4 C 1.53000 * 109.47266 * 239.99859 * 2 1 3 5 5 C 1.52991 * 109.47516 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47516 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47074 * 300.00315 * 5 4 2 8 8 C 1.53007 * 109.47289 * 59.99894 * 5 4 2 9 9 C 1.53000 * 109.46928 * 300.00466 * 8 5 4 10 10 C 1.52996 * 109.47266 * 59.99897 * 9 8 5 11 11 H 1.09008 * 109.47088 * 180.02562 * 10 9 8 12 12 N 1.46500 * 109.47586 * 59.99915 * 10 9 8 13 13 C 1.34772 * 119.99759 * 84.99537 * 12 10 9 14 14 O 1.21587 * 120.00551 * 354.94103 * 13 12 10 15 15 N 1.34778 * 119.99667 * 174.93334 * 13 12 10 16 16 C 1.46928 * 120.63200 * 5.04204 * 15 13 12 17 17 C 1.53190 * 108.77443 * 233.58406 * 16 15 13 18 18 C 1.53047 * 109.31198 * 305.36077 * 17 16 15 19 19 C 1.53037 * 109.53545 * 61.36899 * 18 17 16 20 20 H 1.08993 * 109.50366 * 58.61478 * 19 18 17 21 21 C 1.50704 * 109.49965 * 178.68535 * 19 18 17 22 22 H 1.08006 * 119.99287 * 359.97438 * 21 19 18 23 23 C 1.37869 * 120.00234 * 179.97438 * 21 19 18 24 24 N 1.31513 * 120.00262 * 359.97438 * 23 21 19 25 25 Si 1.86800 * 119.99799 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47218 * 89.99962 * 25 23 21 27 27 H 1.48505 * 109.47172 * 209.99753 * 25 23 21 28 28 H 1.48503 * 109.47471 * 330.00079 * 25 23 21 29 29 C 1.46931 * 120.63171 * 184.75673 * 15 13 12 30 30 H 1.08997 * 109.47490 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47445 * 299.99974 * 1 2 3 32 32 H 1.09002 * 109.47236 * 59.99761 * 1 2 3 33 33 H 1.09002 * 109.46941 * 59.99555 * 4 2 1 34 34 H 1.09006 * 109.46836 * 300.00481 * 4 2 1 35 35 H 1.09002 * 109.46683 * 59.99816 * 6 5 4 36 36 H 1.08999 * 109.47255 * 180.02562 * 6 5 4 37 37 H 1.08997 * 109.46750 * 300.00086 * 6 5 4 38 38 H 1.08996 * 109.47129 * 59.99689 * 7 5 4 39 39 H 1.08999 * 109.47179 * 179.97438 * 7 5 4 40 40 H 1.09002 * 109.46953 * 299.99524 * 7 5 4 41 41 H 1.08994 * 109.46574 * 59.99856 * 8 5 4 42 42 H 1.08996 * 109.46950 * 180.02562 * 8 5 4 43 43 H 1.09002 * 109.47141 * 179.97438 * 9 8 5 44 44 H 1.09007 * 109.47294 * 299.99691 * 9 8 5 45 45 H 0.96994 * 119.99631 * 265.00681 * 12 10 9 46 46 H 1.09002 * 109.58525 * 353.36860 * 16 15 13 47 47 H 1.08995 * 109.59058 * 113.65262 * 16 15 13 48 48 H 1.08995 * 109.49989 * 65.31391 * 17 16 15 49 49 H 1.08996 * 109.49983 * 185.37818 * 17 16 15 50 50 H 1.09001 * 109.45989 * 181.38443 * 18 17 16 51 51 H 1.08993 * 109.45860 * 301.34602 * 18 17 16 52 52 H 0.96999 * 119.99996 * 180.02562 * 24 23 21 53 53 H 1.09003 * 109.58702 * 246.20723 * 29 15 13 54 54 H 1.08997 * 109.58403 * 6.62723 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5699 -0.7219 -1.2489 6 6 4.0799 -1.4437 -2.4978 7 6 4.0805 0.7205 -1.2486 8 6 4.0795 -1.4435 0.0004 9 6 3.5694 -0.7222 1.2496 10 6 2.0395 -0.7217 1.2493 11 1 1.6761 -0.2074 2.1391 12 7 1.5506 -2.1027 1.2490 13 6 1.4215 -2.7720 2.4116 14 8 1.7966 -2.2639 3.4506 15 7 0.8764 -4.0046 2.4226 16 6 0.5196 -4.6766 1.1657 17 6 -0.9473 -5.1120 1.2386 18 6 -1.1601 -5.9664 2.4904 19 6 -0.8399 -5.1373 3.7363 20 1 -1.4805 -4.2558 3.7613 21 6 -1.0807 -5.9692 4.9696 22 1 -1.4278 -6.9875 4.8748 23 6 -0.8578 -5.4304 6.2189 24 7 -0.4346 -4.1905 6.3344 25 14 -1.1569 -6.4614 7.7477 26 1 0.0895 -7.1831 8.1097 27 1 -1.5605 -5.5768 8.8702 28 1 -2.2374 -7.4439 7.4786 29 6 0.6334 -4.7044 3.6915 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.6766 -0.2075 -2.1392 34 1 1.6766 -1.7490 -1.2492 35 1 3.7169 -0.9300 -3.3880 36 1 5.1699 -1.4445 -2.4974 37 1 3.7162 -2.4712 -2.4975 38 1 3.7171 1.2343 -0.3587 39 1 5.1705 0.7201 -1.2479 40 1 3.7175 1.2345 -2.1386 41 1 3.7157 -2.4709 0.0001 42 1 5.1694 -1.4435 0.0007 43 1 3.9321 -1.2365 2.1396 44 1 3.9331 0.3054 1.2498 45 1 1.3200 -2.5353 0.4121 46 1 0.6553 -3.9878 0.3318 47 1 1.1557 -5.5504 1.0251 48 1 -1.5865 -4.2305 1.2867 49 1 -1.1982 -5.6953 0.3526 50 1 -2.1976 -6.2980 2.5317 51 1 -0.5026 -6.8349 2.4533 52 1 -0.2774 -3.8116 7.2134 53 1 1.2770 -5.5819 3.7539 54 1 0.8443 -4.0341 4.5247 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595533969.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:34 Heat of formation + Delta-G solvation = -74.486489 kcal Electronic energy + Delta-G solvation = -29920.949077 eV Core-core repulsion = 26276.583607 eV Total energy + Delta-G solvation = -3644.365470 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.80031 -40.33499 -38.32764 -35.98715 -35.26523 -33.74760 -33.27882 -32.00836 -31.30059 -28.12513 -27.50292 -27.30366 -26.83017 -25.77223 -23.46021 -23.05064 -21.88063 -21.13451 -20.42864 -19.25582 -18.95268 -18.18190 -16.97583 -16.65144 -16.39323 -16.10097 -15.76653 -15.55656 -15.27996 -15.18048 -14.88804 -14.74646 -14.56624 -14.29518 -14.23276 -13.80269 -13.65105 -13.53872 -13.25236 -12.95307 -12.88677 -12.68855 -12.65430 -12.63819 -12.43853 -12.29761 -12.22627 -12.10900 -11.98913 -11.83802 -11.70310 -11.61842 -11.18975 -11.12614 -11.01767 -10.93111 -10.85981 -10.77584 -10.51533 -10.00130 -9.21164 -8.09516 -6.26816 1.40513 1.40956 1.51944 1.85548 2.33240 2.42252 3.08195 3.21061 3.66149 3.76028 3.77056 4.02445 4.06047 4.16050 4.20821 4.27740 4.35862 4.41710 4.53384 4.54567 4.59228 4.62987 4.73061 4.76061 4.80418 4.81345 4.84952 4.92938 4.95903 5.05265 5.06357 5.10373 5.12861 5.14917 5.20413 5.23087 5.26886 5.27374 5.29133 5.31200 5.36180 5.43489 5.53691 5.56836 5.57480 5.66549 5.67911 5.76783 5.90354 5.99409 6.21497 6.37541 6.86359 7.20522 7.43139 7.76836 8.93653 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.021332 B = 0.003289 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.291332 B = 8512.045543 C = 8928.404751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 H 0.099 0.901 4 C -0.099 4.099 5 C -0.060 4.060 6 C -0.138 4.138 7 C -0.144 4.144 8 C -0.099 4.099 9 C -0.128 4.128 10 C 0.168 3.832 11 H 0.047 0.953 12 N -0.720 5.720 13 C 0.694 3.306 14 O -0.641 6.641 15 N -0.629 5.629 16 C 0.112 3.888 17 C -0.124 4.124 18 C -0.104 4.104 19 C 0.040 3.960 20 H -0.015 1.015 21 C -0.536 4.536 22 H 0.062 0.938 23 C 0.009 3.991 24 N -0.915 5.915 25 Si 0.958 3.042 26 H -0.275 1.275 27 H -0.288 1.288 28 H -0.262 1.262 29 C 0.146 3.854 30 H 0.047 0.953 31 H 0.038 0.962 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.066 0.934 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.030 0.970 44 H 0.084 0.916 45 H 0.403 0.597 46 H 0.095 0.905 47 H 0.077 0.923 48 H 0.050 0.950 49 H 0.104 0.896 50 H 0.051 0.949 51 H 0.056 0.944 52 H 0.258 0.742 53 H 0.030 0.970 54 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.566 7.308 -23.081 25.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 H 0.118 0.882 4 C -0.136 4.136 5 C -0.061 4.061 6 C -0.195 4.195 7 C -0.201 4.201 8 C -0.137 4.137 9 C -0.166 4.166 10 C 0.063 3.937 11 H 0.065 0.935 12 N -0.380 5.380 13 C 0.395 3.605 14 O -0.523 6.523 15 N -0.365 5.365 16 C -0.011 4.011 17 C -0.162 4.162 18 C -0.142 4.142 19 C 0.021 3.979 20 H 0.003 0.997 21 C -0.575 4.575 22 H 0.080 0.920 23 C -0.191 4.191 24 N -0.553 5.553 25 Si 0.783 3.217 26 H -0.201 1.201 27 H -0.214 1.214 28 H -0.186 1.186 29 C 0.023 3.977 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.049 0.951 44 H 0.103 0.897 45 H 0.243 0.757 46 H 0.113 0.887 47 H 0.095 0.905 48 H 0.068 0.932 49 H 0.123 0.877 50 H 0.070 0.930 51 H 0.075 0.925 52 H 0.067 0.933 53 H 0.048 0.952 54 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.859 7.805 -22.224 24.533 hybrid contribution -0.227 -0.623 1.569 1.704 sum 6.632 7.182 -20.655 22.851 Atomic orbital electron populations 1.21805 0.94825 1.01755 1.01916 1.21426 0.95790 1.00380 0.93139 0.88247 1.21650 0.94380 1.00451 0.97138 1.20515 0.95013 0.96083 0.94440 1.21830 1.00941 1.00119 0.96643 1.21960 1.00875 0.95000 1.02243 1.21499 1.00030 0.98681 0.93485 1.21909 0.95176 1.01633 0.97905 1.20820 0.93615 0.80740 0.98563 0.93488 1.45174 1.71477 1.14794 1.06573 1.16223 0.78632 0.81315 0.84284 1.90864 1.57767 1.69824 1.33866 1.47666 1.64251 1.15706 1.08900 1.21812 0.96602 0.97772 0.84886 1.21895 0.95574 0.99945 0.98809 1.21495 1.00441 0.98012 0.94220 1.18973 0.91393 0.93988 0.93569 0.99659 1.21533 1.44990 0.99396 0.91535 0.91958 1.25911 0.94780 0.95895 1.02492 1.70112 1.46113 1.15037 1.24060 0.85562 0.78710 0.78592 0.78837 1.20096 1.21383 1.18587 1.21612 0.97605 0.94387 0.84121 0.93406 0.94283 0.90314 0.89545 0.92221 0.91516 0.92726 0.92815 0.92426 0.92786 0.91544 0.93105 0.91986 0.95140 0.89711 0.75745 0.88693 0.90508 0.93151 0.87745 0.92978 0.92503 0.93264 0.95194 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.03 71.98 0.65 -2.10 16 2 C -0.09 -1.59 2.24 -10.79 -0.02 -1.61 16 3 H 0.10 1.55 6.43 -2.39 -0.02 1.53 16 4 C -0.10 -1.35 3.84 30.59 0.12 -1.23 16 5 C -0.06 -0.84 0.77 -52.18 -0.04 -0.88 16 6 C -0.14 -1.61 8.47 71.98 0.61 -1.00 16 7 C -0.14 -1.78 7.78 71.98 0.56 -1.22 16 8 C -0.10 -1.96 4.57 30.60 0.14 -1.82 16 9 C -0.13 -3.21 5.33 30.59 0.16 -3.05 16 10 C 0.17 4.53 2.19 44.99 0.10 4.62 16 11 H 0.05 1.62 7.66 -2.38 -0.02 1.61 16 12 N -0.72 -21.62 3.45 -457.80 -1.58 -23.20 16 13 C 0.69 29.73 8.26 179.06 1.48 31.20 16 14 O -0.64 -34.86 15.44 -3.99 -0.06 -34.92 16 15 N -0.63 -26.20 2.97 -836.06 -2.48 -28.68 16 16 C 0.11 3.24 6.43 86.36 0.56 3.79 16 17 C -0.12 -3.67 6.08 30.67 0.19 -3.48 16 18 C -0.10 -4.06 5.10 30.62 0.16 -3.90 16 19 C 0.04 2.07 2.26 -11.32 -0.03 2.05 16 20 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 21 C -0.54 -30.13 8.56 25.60 0.22 -29.92 16 22 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 23 C 0.01 0.49 5.30 84.65 0.45 0.94 16 24 N -0.91 -57.17 11.41 21.44 0.24 -56.93 16 25 Si 0.96 45.22 29.54 68.60 2.03 47.24 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 27 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 28 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 29 C 0.15 7.57 5.41 86.51 0.47 8.04 16 30 H 0.05 0.99 7.44 -2.39 -0.02 0.97 16 31 H 0.04 0.87 8.14 -2.39 -0.02 0.86 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 0.83 6.50 -2.38 -0.02 0.82 16 35 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 38 H 0.06 0.77 4.81 -2.39 -0.01 0.76 16 39 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.05 1.12 7.60 -2.39 -0.02 1.10 16 42 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.03 1.01 8.09 -2.39 -0.02 0.99 16 44 H 0.08 1.82 6.43 -2.38 -0.02 1.80 16 45 H 0.40 9.50 4.11 -92.71 -0.38 9.12 16 46 H 0.10 2.04 5.57 -2.39 -0.01 2.03 16 47 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 50 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 51 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 52 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 53 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 54 H 0.07 4.54 5.17 -2.39 -0.01 4.53 16 Total: -1.00 -75.25 391.90 4.39 -70.86 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.48 Total: 25.18 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 5.76 Total: 0.44 kcal Atomic # 7 Polarization: -104.99 SS G_CDS: -3.81 Total: -108.81 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -0.06 Total: -34.92 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -75.25 4.39 -70.86 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595533969.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.624 kcal (2) G-P(sol) polarization free energy of solvation -75.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds