Wall clock time and date at job start Tue Mar 31 2020 15:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47246 * 2 1 4 4 C 1.52995 * 109.47207 * 239.99749 * 2 1 3 5 5 C 1.53006 * 109.47201 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.47095 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.46750 * 300.00116 * 5 4 2 8 8 C 1.53003 * 109.46912 * 59.99905 * 5 4 2 9 9 C 1.53003 * 109.47158 * 299.99861 * 8 5 4 10 10 C 1.53003 * 109.46902 * 119.99257 * 2 1 3 11 11 H 1.08994 * 109.47437 * 300.00386 * 10 2 1 12 12 N 1.46497 * 109.46915 * 60.00441 * 10 2 1 13 13 C 1.34776 * 120.00155 * 204.99335 * 12 10 2 14 14 O 1.21588 * 119.99599 * 355.02734 * 13 12 10 15 15 N 1.34780 * 120.00191 * 175.02016 * 13 12 10 16 16 C 1.46920 * 120.62801 * 5.23053 * 15 13 12 17 17 C 1.53196 * 108.77191 * 126.36817 * 16 15 13 18 18 C 1.53039 * 109.31200 * 54.63409 * 17 16 15 19 19 C 1.53034 * 109.54234 * 298.63333 * 18 17 16 20 20 H 1.09008 * 109.49824 * 301.38539 * 19 18 17 21 21 C 1.50692 * 109.50431 * 181.31767 * 19 18 17 22 22 H 1.08000 * 119.99689 * 359.97438 * 21 19 18 23 23 C 1.37877 * 120.00467 * 180.02562 * 21 19 18 24 24 N 1.31520 * 119.99677 * 0.02562 * 23 21 19 25 25 Si 1.86796 * 120.00192 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47177 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47200 * 120.00169 * 25 23 21 28 28 H 1.48501 * 109.47300 * 240.00081 * 25 23 21 29 29 C 1.46930 * 120.62967 * 184.94966 * 15 13 12 30 30 H 1.09003 * 109.47165 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47241 * 300.00603 * 1 2 3 32 32 H 1.08998 * 109.47364 * 60.00348 * 1 2 3 33 33 H 1.08995 * 109.47281 * 60.00158 * 4 2 1 34 34 H 1.09003 * 109.46870 * 299.99951 * 4 2 1 35 35 H 1.08998 * 109.46571 * 180.02562 * 6 5 4 36 36 H 1.08998 * 109.46931 * 59.99830 * 6 5 4 37 37 H 1.09003 * 109.47083 * 300.00012 * 6 5 4 38 38 H 1.09004 * 109.46902 * 299.99107 * 7 5 4 39 39 H 1.08991 * 109.47579 * 60.00237 * 7 5 4 40 40 H 1.09008 * 109.46737 * 180.02562 * 7 5 4 41 41 H 1.09003 * 109.47319 * 59.99956 * 8 5 4 42 42 H 1.08998 * 109.46731 * 179.97438 * 8 5 4 43 43 H 1.09000 * 109.47323 * 300.00700 * 9 8 5 44 44 H 1.08995 * 109.47174 * 179.97438 * 9 8 5 45 45 H 0.97008 * 120.00122 * 24.99782 * 12 10 2 46 46 H 1.09004 * 109.58990 * 246.15228 * 16 15 13 47 47 H 1.08990 * 109.59095 * 6.44032 * 16 15 13 48 48 H 1.09002 * 109.49700 * 174.58536 * 17 16 15 49 49 H 1.08992 * 109.49756 * 294.65093 * 17 16 15 50 50 H 1.09004 * 109.46243 * 58.65776 * 18 17 16 51 51 H 1.09006 * 109.46190 * 178.62243 * 18 17 16 52 52 H 0.96998 * 119.99432 * 180.02562 * 24 23 21 53 53 H 1.09002 * 109.58455 * 353.42060 * 29 15 13 54 54 H 1.08998 * 109.58416 * 113.84298 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0800 -1.4437 -2.4977 7 6 4.0804 0.7205 -1.2485 8 6 4.0795 -1.4434 0.0005 9 6 3.5694 -0.7220 1.2497 10 6 2.0399 -0.7211 1.2494 11 1 1.6766 -0.2073 2.1393 12 7 1.5516 -2.1023 1.2494 13 6 1.4229 -2.7715 2.4122 14 8 1.7966 -2.2624 3.4512 15 7 0.8800 -4.0051 2.4233 16 6 0.5290 -4.6797 1.1662 17 6 1.1982 -6.0576 1.1426 18 6 0.8059 -6.8324 2.4027 19 6 1.2965 -6.0785 3.6408 20 1 2.3784 -5.9568 3.5877 21 6 0.9382 -6.8582 4.8795 22 1 0.4126 -7.7977 4.7929 23 6 1.2803 -6.3718 6.1234 24 7 1.9190 -5.2270 6.2289 25 14 0.8368 -7.3388 7.6588 26 1 0.1256 -8.5835 7.2717 27 1 2.0757 -7.6861 8.4002 28 1 -0.0441 -6.5151 8.5254 29 6 0.6336 -4.7032 3.6925 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.6767 -0.2075 -2.1391 34 1 1.6766 -1.7490 -1.2491 35 1 5.1700 -1.4445 -2.4972 36 1 3.7170 -0.9300 -3.3879 37 1 3.7163 -2.4713 -2.4975 38 1 3.7176 1.2345 -2.1387 39 1 3.7172 1.2343 -0.3587 40 1 5.1705 0.7201 -1.2488 41 1 3.7157 -2.4710 0.0003 42 1 5.1694 -1.4442 0.0005 43 1 3.9331 0.3055 1.2498 44 1 3.9320 -1.2363 2.1397 45 1 1.3210 -2.5353 0.4126 46 1 -0.5529 -4.7979 1.1046 47 1 0.8803 -4.0861 0.3224 48 1 0.8691 -6.6068 0.2605 49 1 2.2809 -5.9357 1.1123 50 1 -0.2787 -6.9326 2.4445 51 1 1.2612 -7.8225 2.3767 52 1 2.1601 -4.8850 7.1040 53 1 1.0562 -4.1260 4.5149 54 1 -0.4395 -4.8232 3.8411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595533970.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:38 Heat of formation + Delta-G solvation = -74.664797 kcal Electronic energy + Delta-G solvation = -29962.598328 eV Core-core repulsion = 26318.225126 eV Total energy + Delta-G solvation = -3644.373202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.80131 -40.34497 -38.34694 -35.98493 -35.27706 -33.74774 -33.28399 -32.00713 -31.32652 -28.13187 -27.49339 -27.30742 -26.83344 -25.78241 -23.46324 -23.06211 -21.88119 -21.12270 -20.44409 -19.24987 -18.94241 -18.19611 -17.01144 -16.55458 -16.44597 -16.09692 -15.76894 -15.62641 -15.24235 -15.17523 -14.87275 -14.68088 -14.57099 -14.38134 -14.21691 -13.86163 -13.65042 -13.50954 -13.25671 -12.94477 -12.91201 -12.68954 -12.65467 -12.62598 -12.44742 -12.28718 -12.20820 -12.11649 -11.98683 -11.84567 -11.69544 -11.62470 -11.18561 -11.12717 -11.01611 -10.93487 -10.85656 -10.77507 -10.51817 -10.00311 -9.21227 -8.09121 -6.27151 1.39492 1.40824 1.53176 1.86484 2.32094 2.42195 3.09188 3.20959 3.66216 3.75964 3.76878 4.01961 4.05877 4.14958 4.20919 4.27568 4.35855 4.41543 4.52631 4.53942 4.59209 4.63177 4.72626 4.76811 4.80276 4.81774 4.85656 4.92479 4.96551 5.05118 5.06724 5.10253 5.11362 5.14981 5.20202 5.22689 5.26297 5.27277 5.28779 5.30153 5.35773 5.44607 5.52729 5.56627 5.57672 5.66501 5.68271 5.77064 5.91047 6.00718 6.21543 6.37877 6.86776 7.20830 7.43027 7.77544 8.93891 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.019916 B = 0.003348 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.548262 B = 8360.732118 C = 8678.750116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 H 0.100 0.900 4 C -0.099 4.099 5 C -0.060 4.060 6 C -0.139 4.139 7 C -0.143 4.143 8 C -0.100 4.100 9 C -0.130 4.130 10 C 0.169 3.831 11 H 0.052 0.948 12 N -0.720 5.720 13 C 0.693 3.307 14 O -0.640 6.640 15 N -0.629 5.629 16 C 0.112 3.888 17 C -0.125 4.125 18 C -0.103 4.103 19 C 0.038 3.962 20 H -0.019 1.019 21 C -0.535 4.535 22 H 0.063 0.937 23 C 0.008 3.992 24 N -0.914 5.914 25 Si 0.958 3.042 26 H -0.259 1.259 27 H -0.283 1.283 28 H -0.283 1.283 29 C 0.145 3.855 30 H 0.049 0.951 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.047 0.953 42 H 0.057 0.943 43 H 0.086 0.914 44 H 0.024 0.976 45 H 0.403 0.597 46 H 0.080 0.920 47 H 0.095 0.905 48 H 0.105 0.895 49 H 0.046 0.954 50 H 0.058 0.942 51 H 0.050 0.950 52 H 0.258 0.742 53 H 0.074 0.926 54 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.739 10.540 -22.753 25.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 H 0.118 0.882 4 C -0.136 4.136 5 C -0.060 4.060 6 C -0.196 4.196 7 C -0.200 4.200 8 C -0.138 4.138 9 C -0.168 4.168 10 C 0.064 3.936 11 H 0.070 0.930 12 N -0.380 5.380 13 C 0.395 3.605 14 O -0.522 6.522 15 N -0.365 5.365 16 C -0.010 4.010 17 C -0.163 4.163 18 C -0.141 4.141 19 C 0.019 3.981 20 H 0.000 1.000 21 C -0.573 4.573 22 H 0.081 0.919 23 C -0.191 4.191 24 N -0.553 5.553 25 Si 0.784 3.216 26 H -0.183 1.183 27 H -0.209 1.209 28 H -0.209 1.209 29 C 0.022 3.978 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.104 0.896 44 H 0.043 0.957 45 H 0.242 0.758 46 H 0.098 0.902 47 H 0.113 0.887 48 H 0.123 0.877 49 H 0.065 0.935 50 H 0.077 0.923 51 H 0.069 0.931 52 H 0.067 0.933 53 H 0.092 0.908 54 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.432 11.029 -21.898 24.522 hybrid contribution 0.135 -0.773 1.558 1.745 sum -0.297 10.255 -20.340 22.781 Atomic orbital electron populations 1.21797 0.94402 1.01891 1.02078 1.21428 0.96137 1.00298 0.92863 0.88209 1.21653 0.94111 1.00506 0.97368 1.20515 0.95288 0.96051 0.94161 1.21836 1.00863 1.00118 0.96770 1.21958 1.00791 0.94933 1.02348 1.21499 0.99874 0.98615 0.93803 1.21913 0.95748 1.01528 0.97632 1.20815 0.93217 0.80749 0.98833 0.92989 1.45190 1.71489 1.14804 1.06524 1.16238 0.78507 0.81458 0.84343 1.90879 1.57385 1.69973 1.33956 1.47659 1.64849 1.15146 1.08857 1.21809 1.00549 0.93775 0.84908 1.21899 0.99906 0.95739 0.98774 1.21490 1.00272 0.98202 0.94147 1.18833 0.93549 0.91982 0.93761 1.00041 1.21549 1.37540 1.06614 0.91644 0.91919 1.25928 0.94808 0.95821 1.02568 1.70134 1.40401 1.20472 1.24311 0.85500 0.77838 0.79018 0.79272 1.18290 1.20925 1.20859 1.21435 0.97117 0.94940 0.84324 0.93202 0.93888 0.90352 0.89352 0.92259 0.92936 0.91285 0.92927 0.91344 0.92306 0.93003 0.93451 0.92400 0.89609 0.95675 0.75759 0.90207 0.88744 0.87695 0.93529 0.92309 0.93076 0.93278 0.90781 0.94928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.04 71.98 0.65 -1.74 16 2 C -0.09 -1.50 2.24 -10.80 -0.02 -1.52 16 3 H 0.10 1.46 6.43 -2.39 -0.02 1.44 16 4 C -0.10 -1.34 3.84 30.59 0.12 -1.22 16 5 C -0.06 -0.89 0.77 -52.18 -0.04 -0.93 16 6 C -0.14 -1.77 8.47 71.98 0.61 -1.16 16 7 C -0.14 -1.85 7.78 71.98 0.56 -1.29 16 8 C -0.10 -2.18 4.57 30.60 0.14 -2.04 16 9 C -0.13 -3.45 5.32 30.58 0.16 -3.29 16 10 C 0.17 4.50 2.19 44.98 0.10 4.59 16 11 H 0.05 1.72 7.65 -2.39 -0.02 1.70 16 12 N -0.72 -21.46 3.44 -457.89 -1.58 -23.04 16 13 C 0.69 29.67 8.26 179.05 1.48 31.14 16 14 O -0.64 -34.97 15.42 -3.99 -0.06 -35.03 16 15 N -0.63 -26.18 2.98 -837.75 -2.50 -28.68 16 16 C 0.11 3.25 6.39 86.36 0.55 3.80 16 17 C -0.13 -3.76 6.08 30.67 0.19 -3.58 16 18 C -0.10 -4.07 5.11 30.62 0.16 -3.92 16 19 C 0.04 1.99 2.24 -11.61 -0.03 1.96 16 20 H -0.02 -1.13 8.14 -2.38 -0.02 -1.15 16 21 C -0.53 -30.20 8.56 25.60 0.22 -29.98 16 22 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 23 C 0.01 0.46 5.30 84.65 0.45 0.91 16 24 N -0.91 -57.47 11.39 21.45 0.24 -57.22 16 25 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 26 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 27 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 28 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 29 C 0.14 7.52 5.39 86.22 0.46 7.98 16 30 H 0.05 0.89 7.44 -2.39 -0.02 0.87 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.82 6.51 -2.39 -0.02 0.81 16 35 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.06 0.80 4.81 -2.39 -0.01 0.79 16 40 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.05 1.17 7.60 -2.39 -0.02 1.15 16 42 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.09 1.93 6.43 -2.39 -0.02 1.91 16 44 H 0.02 0.89 8.09 -2.39 -0.02 0.87 16 45 H 0.40 9.42 4.14 -92.70 -0.38 9.04 16 46 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 47 H 0.09 2.04 5.64 -2.39 -0.01 2.03 16 48 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 49 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 51 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 52 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 53 H 0.07 4.64 5.10 -2.39 -0.01 4.62 16 54 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -76.07 391.82 4.37 -71.70 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.48 Total: 25.20 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 5.75 Total: -0.27 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -3.83 Total: -108.94 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -0.06 Total: -35.03 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -76.07 4.37 -71.70 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595533970.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.967 kcal (2) G-P(sol) polarization free energy of solvation -76.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds