Wall clock time and date at job start Tue Mar 31 2020 15:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47503 * 2 1 4 4 C 1.52998 * 109.47242 * 239.99736 * 2 1 3 5 5 C 1.52999 * 109.47568 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.46816 * 300.00207 * 5 4 2 7 7 C 1.52998 * 109.47568 * 180.02562 * 5 4 2 8 8 C 1.53003 * 109.47096 * 59.99952 * 5 4 2 9 9 C 1.52998 * 109.46951 * 300.00426 * 8 5 4 10 10 C 1.52999 * 109.47568 * 59.99863 * 9 8 5 11 11 H 1.09006 * 109.47025 * 59.99452 * 10 9 8 12 12 N 1.46500 * 109.47517 * 179.97438 * 10 9 8 13 13 C 1.34780 * 120.00011 * 275.00096 * 12 10 9 14 14 O 1.21583 * 119.99632 * 355.01287 * 13 12 10 15 15 N 1.34771 * 119.99950 * 175.01312 * 13 12 10 16 16 C 1.46933 * 120.63129 * 5.22200 * 15 13 12 17 17 C 1.53190 * 108.77366 * 126.37344 * 16 15 13 18 18 C 1.53040 * 109.31704 * 54.63522 * 17 16 15 19 19 C 1.53040 * 109.53481 * 298.63871 * 18 17 16 20 20 H 1.08999 * 109.49785 * 301.37566 * 19 18 17 21 21 C 1.50700 * 109.49747 * 181.31577 * 19 18 17 22 22 H 1.08004 * 119.99863 * 359.97438 * 21 19 18 23 23 C 1.37869 * 120.00331 * 179.97438 * 21 19 18 24 24 N 1.31523 * 120.00474 * 180.02562 * 23 21 19 25 25 Si 1.86802 * 119.99932 * 359.97438 * 23 21 19 26 26 H 1.48501 * 109.47173 * 90.00172 * 25 23 21 27 27 H 1.48499 * 109.47215 * 209.99844 * 25 23 21 28 28 H 1.48494 * 109.46966 * 329.99783 * 25 23 21 29 29 C 1.46921 * 120.63303 * 184.94863 * 15 13 12 30 30 H 1.08996 * 109.47021 * 300.00302 * 1 2 3 31 31 H 1.08996 * 109.46991 * 60.00096 * 1 2 3 32 32 H 1.08997 * 109.47503 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46984 * 60.00160 * 4 2 1 34 34 H 1.09006 * 109.47395 * 300.00517 * 4 2 1 35 35 H 1.08999 * 109.47315 * 179.97438 * 6 5 4 36 36 H 1.08996 * 109.47601 * 299.99949 * 6 5 4 37 37 H 1.09008 * 109.47419 * 60.00223 * 6 5 4 38 38 H 1.08997 * 109.47087 * 300.00323 * 7 5 4 39 39 H 1.09006 * 109.46984 * 59.99964 * 7 5 4 40 40 H 1.08996 * 109.46995 * 179.97438 * 7 5 4 41 41 H 1.08997 * 109.46849 * 60.00111 * 8 5 4 42 42 H 1.08999 * 109.47410 * 180.02562 * 8 5 4 43 43 H 1.09006 * 109.46984 * 179.97438 * 9 8 5 44 44 H 1.09006 * 109.47395 * 299.99542 * 9 8 5 45 45 H 0.97000 * 119.99621 * 95.00013 * 12 10 9 46 46 H 1.09001 * 109.58626 * 246.15884 * 16 15 13 47 47 H 1.09000 * 109.58544 * 6.58544 * 16 15 13 48 48 H 1.08996 * 109.49692 * 174.59193 * 17 16 15 49 49 H 1.09003 * 109.49241 * 294.65198 * 17 16 15 50 50 H 1.08995 * 109.45790 * 58.65291 * 18 17 16 51 51 H 1.08990 * 109.46243 * 178.63121 * 18 17 16 52 52 H 0.97001 * 120.00242 * 180.02562 * 24 23 21 53 53 H 1.09011 * 109.58587 * 353.41250 * 29 15 13 54 54 H 1.08991 * 109.59226 * 113.83723 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0805 0.7204 -1.2487 7 6 4.0800 -1.4426 -2.4984 8 6 4.0795 -1.4435 0.0003 9 6 3.5695 -0.7222 1.2495 10 6 2.0395 -0.7216 1.2493 11 1 1.6758 -1.7492 1.2490 12 7 1.5512 -0.0315 2.4457 13 6 1.4220 -0.7044 3.6063 14 8 1.6234 -1.9030 3.6397 15 7 1.0695 -0.0487 4.7298 16 6 0.7119 1.3757 4.6844 17 6 -0.6628 1.5599 5.3347 18 6 -0.6407 0.9621 6.7433 19 6 -0.3433 -0.5367 6.6585 20 1 -1.1032 -1.0244 6.0479 21 6 -0.3537 -1.1307 8.0435 22 1 -0.5520 -0.5022 8.8991 23 6 -0.1099 -2.4764 8.2183 24 7 -0.1194 -2.9949 9.4270 25 14 0.2324 -3.5636 6.7384 26 1 1.6926 -3.5877 6.4690 27 1 -0.2424 -4.9428 7.0169 28 1 -0.4808 -3.0246 5.5527 29 6 1.0296 -0.7461 6.0223 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6767 -0.2074 -2.1392 34 1 1.6766 -1.7490 -1.2492 35 1 5.1705 0.7201 -1.2480 36 1 3.7175 1.2346 -2.1386 37 1 3.7172 1.2343 -0.3586 38 1 3.7163 -2.4701 -2.4991 39 1 3.7171 -0.9281 -3.3883 40 1 5.1700 -1.4426 -2.4984 41 1 3.7158 -2.4710 0.0001 42 1 5.1695 -1.4435 0.0008 43 1 3.9321 -1.2365 2.1396 44 1 3.9332 0.3054 1.2498 45 1 1.3208 0.9098 2.4026 46 1 1.4552 1.9566 5.2304 47 1 0.6734 1.7099 3.6476 48 1 -0.8976 2.6226 5.3941 49 1 -1.4194 1.0531 4.7357 50 1 0.1329 1.4528 7.3339 51 1 -1.6103 1.1135 7.2173 52 1 0.0524 -3.9416 9.5500 53 1 1.2006 -1.8116 5.8681 54 1 1.7993 -0.3418 6.6796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595533972.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:45 Heat of formation + Delta-G solvation = -74.819647 kcal Electronic energy + Delta-G solvation = -29629.592812 eV Core-core repulsion = 25985.212895 eV Total energy + Delta-G solvation = -3644.379917 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.77352 -40.51404 -38.58910 -36.27805 -35.33239 -33.93170 -33.37967 -32.35477 -31.81105 -28.16222 -27.51498 -27.33802 -26.91607 -25.59540 -23.57456 -23.15263 -21.70868 -21.53159 -20.48077 -19.54288 -18.98456 -18.80775 -17.54326 -16.84817 -16.36714 -16.02218 -15.91270 -15.60177 -15.49873 -15.30520 -15.03541 -14.86100 -14.80030 -14.52306 -14.06714 -13.92129 -13.75213 -13.67277 -13.36884 -13.25251 -13.13053 -12.90362 -12.72852 -12.68828 -12.54183 -12.34249 -12.14466 -12.13921 -11.95531 -11.85868 -11.70300 -11.59891 -11.41490 -11.18816 -11.13210 -11.04424 -10.97915 -10.92142 -10.80452 -10.13539 -9.40618 -8.40917 -6.41914 1.20879 1.27316 1.42689 1.65891 2.12649 2.19640 2.92374 2.99201 3.59829 3.66874 3.82526 3.96263 4.00447 4.05828 4.12809 4.16054 4.29606 4.38188 4.43027 4.43922 4.51083 4.52423 4.61206 4.66366 4.67918 4.72118 4.79958 4.86913 4.87540 4.90044 4.99243 5.00645 5.03180 5.08155 5.10185 5.12753 5.15122 5.18876 5.21279 5.24852 5.26696 5.39378 5.40829 5.47275 5.50938 5.53633 5.61018 5.62533 5.67962 5.70404 6.02896 6.25849 6.67087 7.03426 7.23906 7.57769 8.75088 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.019131 B = 0.003488 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.257614 B = 8026.272776 C = 8794.021661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 H 0.100 0.900 4 C -0.097 4.097 5 C -0.063 4.063 6 C -0.142 4.142 7 C -0.140 4.140 8 C -0.103 4.103 9 C -0.125 4.125 10 C 0.167 3.833 11 H 0.049 0.951 12 N -0.723 5.723 13 C 0.696 3.304 14 O -0.646 6.646 15 N -0.629 5.629 16 C 0.110 3.890 17 C -0.127 4.127 18 C -0.097 4.097 19 C 0.003 3.997 20 H 0.010 0.990 21 C -0.509 4.509 22 H 0.053 0.947 23 C 0.031 3.969 24 N -0.937 5.937 25 Si 0.939 3.061 26 H -0.286 1.286 27 H -0.295 1.295 28 H -0.272 1.272 29 C 0.128 3.872 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.036 0.964 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.047 0.953 42 H 0.069 0.931 43 H 0.029 0.971 44 H 0.084 0.916 45 H 0.409 0.591 46 H 0.085 0.915 47 H 0.105 0.895 48 H 0.109 0.891 49 H 0.055 0.945 50 H 0.061 0.939 51 H 0.055 0.945 52 H 0.267 0.733 53 H 0.045 0.955 54 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.384 14.271 -27.162 31.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 H 0.118 0.882 4 C -0.135 4.135 5 C -0.063 4.063 6 C -0.199 4.199 7 C -0.197 4.197 8 C -0.142 4.142 9 C -0.164 4.164 10 C 0.062 3.938 11 H 0.067 0.933 12 N -0.381 5.381 13 C 0.397 3.603 14 O -0.528 6.528 15 N -0.365 5.365 16 C -0.011 4.011 17 C -0.165 4.165 18 C -0.135 4.135 19 C -0.017 4.017 20 H 0.028 0.972 21 C -0.547 4.547 22 H 0.072 0.928 23 C -0.168 4.168 24 N -0.577 5.577 25 Si 0.770 3.230 26 H -0.213 1.213 27 H -0.222 1.222 28 H -0.197 1.197 29 C 0.004 3.996 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.048 0.952 44 H 0.102 0.898 45 H 0.248 0.752 46 H 0.103 0.897 47 H 0.123 0.877 48 H 0.128 0.872 49 H 0.073 0.927 50 H 0.080 0.920 51 H 0.074 0.926 52 H 0.076 0.924 53 H 0.063 0.937 54 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.554 13.282 -27.038 30.829 hybrid contribution 0.066 -1.276 0.388 1.335 sum 6.620 12.007 -26.651 29.971 Atomic orbital electron populations 1.21821 0.94681 1.01356 1.02493 1.21395 0.95882 1.00728 0.92548 0.88233 1.21622 0.94436 1.00379 0.97090 1.20544 0.94985 0.96387 0.94375 1.21956 1.00940 0.94585 1.02434 1.21840 1.01100 0.99935 0.96817 1.21551 1.00586 0.98512 0.93514 1.21922 0.95047 1.01797 0.97633 1.20912 0.93500 0.96048 0.83341 0.93278 1.45166 1.71215 1.14025 1.07715 1.16191 0.77986 0.84638 0.81481 1.90859 1.60736 1.15474 1.85727 1.47567 1.70676 1.12158 1.06091 1.21939 0.97306 0.79282 1.02615 1.21939 0.96474 1.02572 0.95473 1.21362 1.01282 0.93754 0.97083 1.19360 0.92186 0.96267 0.93848 0.97214 1.21331 1.46882 0.93526 0.92998 0.92828 1.25573 0.94976 0.99353 0.96885 1.69980 1.51521 1.13745 1.22455 0.86053 0.78314 0.78098 0.80539 1.21286 1.22212 1.19716 1.21844 0.99764 0.95797 0.82154 0.92869 0.90377 0.94485 0.89432 0.92921 0.92704 0.91489 0.92043 0.93307 0.91462 0.92424 0.93402 0.91247 0.95166 0.89797 0.75198 0.89669 0.87693 0.87240 0.92658 0.92046 0.92586 0.92365 0.93696 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.03 71.98 0.65 -1.65 16 2 C -0.09 -1.31 2.02 -10.79 -0.02 -1.33 16 3 H 0.10 1.11 6.43 -2.39 -0.02 1.10 16 4 C -0.10 -1.31 4.01 30.59 0.12 -1.19 16 5 C -0.06 -0.83 0.77 -52.18 -0.04 -0.87 16 6 C -0.14 -1.49 7.78 71.98 0.56 -0.93 16 7 C -0.14 -1.62 8.47 71.98 0.61 -1.01 16 8 C -0.10 -1.91 4.73 30.59 0.14 -1.77 16 9 C -0.13 -2.80 5.22 30.59 0.16 -2.64 16 10 C 0.17 3.95 1.94 44.99 0.09 4.04 16 11 H 0.05 1.56 7.51 -2.38 -0.02 1.54 16 12 N -0.72 -18.64 4.29 -457.81 -1.97 -20.61 16 13 C 0.70 26.44 8.26 179.06 1.48 27.92 16 14 O -0.65 -31.83 15.39 -3.98 -0.06 -31.89 16 15 N -0.63 -23.00 2.98 -837.76 -2.49 -25.49 16 16 C 0.11 2.64 6.39 86.36 0.55 3.20 16 17 C -0.13 -3.22 6.08 30.67 0.19 -3.03 16 18 C -0.10 -3.50 5.11 30.62 0.16 -3.35 16 19 C 0.00 0.15 1.83 -11.61 -0.02 0.13 16 20 H 0.01 0.50 7.19 -2.39 -0.02 0.49 16 21 C -0.51 -29.35 9.14 25.60 0.23 -29.11 16 22 H 0.05 3.29 7.99 -2.91 -0.02 3.27 16 23 C 0.03 1.88 5.45 84.65 0.46 2.34 16 24 N -0.94 -59.97 13.96 21.45 0.30 -59.67 16 25 Si 0.94 52.33 24.32 68.60 1.67 54.00 16 26 H -0.29 -16.27 6.92 99.48 0.69 -15.59 16 27 H -0.29 -16.00 7.11 99.48 0.71 -15.29 16 28 H -0.27 -15.38 6.53 99.48 0.65 -14.73 16 29 C 0.13 5.92 5.10 86.22 0.44 6.36 16 30 H 0.05 0.88 7.45 -2.39 -0.02 0.86 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.06 0.65 4.81 -2.38 -0.01 0.64 16 38 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 40 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.08 1.54 6.43 -2.38 -0.02 1.52 16 45 H 0.41 7.40 5.88 -92.71 -0.54 6.85 16 46 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.11 1.67 5.65 -2.39 -0.01 1.65 16 48 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 49 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 51 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 52 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 53 H 0.04 2.41 2.31 -2.38 -0.01 2.41 16 54 H 0.06 2.81 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -78.57 389.35 3.45 -75.12 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.24 Total: 11.43 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 5.76 Total: -2.89 kcal Atomic # 7 Polarization: -101.61 SS G_CDS: -4.16 Total: -105.77 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -0.06 Total: -31.89 kcal Atomic # 14 Polarization: 52.33 SS G_CDS: 1.67 Total: 54.00 kcal Total: -78.57 3.45 -75.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595533972.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.303 kcal (2) G-P(sol) polarization free energy of solvation -78.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds