Wall clock time and date at job start Tue Mar 31 2020 15:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46641 * 2 1 4 4 C 1.52999 * 109.47174 * 240.00238 * 2 1 3 5 5 C 1.52998 * 109.47029 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47063 * 59.99811 * 5 4 2 7 7 C 1.52999 * 109.47352 * 299.99991 * 6 5 4 8 8 H 1.09000 * 109.47142 * 299.99994 * 7 6 5 9 9 C 1.53001 * 109.47352 * 179.97438 * 7 6 5 10 10 N 1.46495 * 109.47140 * 64.99640 * 9 7 6 11 11 C 1.34777 * 119.99918 * 179.72174 * 10 9 7 12 12 O 1.21587 * 120.00240 * 354.92932 * 11 10 9 13 13 N 1.34778 * 120.00107 * 174.92154 * 11 10 9 14 14 C 1.46930 * 120.62998 * 5.03903 * 13 11 10 15 15 C 1.53198 * 108.77413 * 233.58255 * 14 13 11 16 16 C 1.53036 * 109.30858 * 305.36375 * 15 14 13 17 17 C 1.53041 * 109.54238 * 61.36663 * 16 15 14 18 18 H 1.09001 * 109.49467 * 58.58209 * 17 16 15 19 19 C 1.50698 * 109.49880 * 178.65115 * 17 16 15 20 20 H 1.07998 * 120.00062 * 359.97438 * 19 17 16 21 21 C 1.37879 * 120.00262 * 180.02562 * 19 17 16 22 22 N 1.31523 * 119.99671 * 359.97438 * 21 19 17 23 23 Si 1.86794 * 120.00458 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.47075 * 59.99705 * 23 21 19 25 25 H 1.48495 * 109.47182 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47076 * 299.99998 * 23 21 19 27 27 C 1.46919 * 120.63174 * 184.75230 * 13 11 10 28 28 C 1.52998 * 109.47029 * 59.99988 * 7 6 5 29 29 H 1.09000 * 109.47153 * 60.00013 * 28 7 6 30 30 C 1.52995 * 109.47094 * 180.02562 * 28 7 6 31 31 H 1.08996 * 109.47645 * 299.99709 * 1 2 3 32 32 H 1.08998 * 109.47609 * 60.00672 * 1 2 3 33 33 H 1.09000 * 109.46641 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47142 * 299.99455 * 4 2 1 35 35 H 1.08995 * 109.47327 * 59.99797 * 4 2 1 36 36 H 1.09000 * 109.47481 * 179.97438 * 5 4 2 37 37 H 1.09004 * 109.47633 * 300.00005 * 5 4 2 38 38 H 1.08999 * 109.47567 * 179.97438 * 6 5 4 39 39 H 1.09005 * 109.47431 * 59.99928 * 6 5 4 40 40 H 1.09006 * 109.46858 * 305.00174 * 9 7 6 41 41 H 1.08999 * 109.47150 * 185.00423 * 9 7 6 42 42 H 0.97005 * 120.00223 * 0.02562 * 10 9 7 43 43 H 1.08999 * 109.58333 * 353.36767 * 14 13 11 44 44 H 1.08993 * 109.58997 * 113.79280 * 14 13 11 45 45 H 1.09002 * 109.49550 * 65.31191 * 15 14 13 46 46 H 1.08993 * 109.49307 * 185.37905 * 15 14 13 47 47 H 1.09004 * 109.45718 * 181.38511 * 16 15 14 48 48 H 1.09006 * 109.46478 * 301.34184 * 16 15 14 49 49 H 0.96998 * 119.99726 * 180.02562 * 22 21 19 50 50 H 1.09006 * 109.58773 * 246.20765 * 27 13 11 51 51 H 1.08997 * 109.58838 * 6.62846 * 27 13 11 52 52 H 1.09000 * 109.47393 * 59.99813 * 30 28 7 53 53 H 1.09009 * 109.47281 * 179.97438 * 30 28 7 54 54 H 1.09004 * 109.47563 * 299.99586 * 30 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2495 6 6 4.0805 -1.4415 -0.0003 7 6 3.5705 -0.7203 1.2490 8 1 3.9334 0.3075 1.2488 9 6 4.0804 -1.4416 2.4982 10 7 5.5404 -1.3383 2.5599 11 6 6.2129 -1.8986 3.5847 12 8 5.6038 -2.4094 4.5047 13 7 7.5607 -1.8930 3.5897 14 6 8.3102 -1.1849 2.5429 15 6 9.3088 -2.1577 1.9078 16 6 10.1848 -2.7704 3.0029 17 6 9.3070 -3.5512 3.9837 18 1 8.7649 -4.3295 3.4465 19 6 10.1740 -4.1815 5.0428 20 1 11.2445 -4.0400 5.0190 21 6 9.6010 -4.9397 6.0417 22 7 8.2975 -5.1125 6.0704 23 14 10.6758 -5.7217 7.3542 24 1 11.4129 -4.6610 8.0870 25 1 9.8234 -6.4790 8.3055 26 1 11.6456 -6.6460 6.7137 27 6 8.3083 -2.5895 4.6454 28 6 2.0405 -0.7209 1.2493 29 1 1.6775 -1.7487 1.2494 30 6 1.5305 0.0008 2.4982 31 1 -0.3634 0.5137 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3632 -1.0277 0.0005 34 1 1.6768 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.9334 -1.2348 -2.1393 37 1 3.9330 0.3072 -1.2497 38 1 5.1705 -1.4415 -0.0006 39 1 3.7175 -2.4693 0.0000 40 1 3.7921 -2.4919 2.4545 41 1 3.6457 -0.9821 3.3859 42 1 6.0228 -0.8628 1.8655 43 1 7.6198 -0.8212 1.7819 44 1 8.8477 -0.3450 2.9830 45 1 8.7666 -2.9492 1.3903 46 1 9.9367 -1.6214 1.1964 47 1 10.9125 -3.4444 2.5510 48 1 10.7077 -1.9765 3.5363 49 1 7.8943 -5.6456 6.7733 50 1 8.8457 -1.8618 5.2535 51 1 7.6168 -3.1528 5.2720 52 1 1.8934 1.0286 2.4976 53 1 0.4404 0.0008 2.4982 54 1 1.8941 -0.5124 3.3884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595592657.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:00 Heat of formation + Delta-G solvation = -83.919823 kcal Electronic energy + Delta-G solvation = -28837.331186 eV Core-core repulsion = 25192.556656 eV Total energy + Delta-G solvation = -3644.774530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.40108 -40.30547 -38.44669 -36.12552 -35.23004 -33.89947 -33.59968 -32.71066 -31.43824 -28.68316 -27.26189 -26.85827 -26.23083 -25.18507 -23.44212 -22.00047 -21.79551 -21.44507 -20.71113 -20.19767 -19.05442 -18.19548 -17.28046 -16.65028 -16.48176 -15.87256 -15.61831 -15.53479 -15.42213 -15.23317 -15.16341 -14.87084 -14.51968 -14.32878 -14.18631 -14.12911 -13.74395 -13.53160 -13.30700 -12.85477 -12.80407 -12.70603 -12.68314 -12.62555 -12.45383 -12.28127 -12.24745 -12.20626 -11.84956 -11.73377 -11.67259 -11.62162 -11.26947 -11.22723 -10.96751 -10.88850 -10.76447 -10.74088 -10.50616 -10.09714 -9.23234 -8.09330 -6.26723 1.40862 1.42764 1.51101 1.81355 2.28001 2.42611 3.06214 3.20736 3.61539 3.73702 3.79635 4.04488 4.07520 4.16846 4.19566 4.28165 4.35861 4.45135 4.47440 4.56054 4.60938 4.62526 4.66911 4.73501 4.79245 4.80806 4.81590 4.85428 4.89452 4.95106 5.04707 5.09029 5.11280 5.15089 5.21665 5.24760 5.27620 5.29233 5.32804 5.36065 5.36975 5.44274 5.46595 5.55163 5.57128 5.63673 5.66414 5.70388 5.89864 5.98651 6.19006 6.36945 6.86414 7.16239 7.43187 7.70850 8.93840 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.022032 B = 0.002718 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.552155 B =10300.926351 C =11053.933589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 H 0.075 0.925 4 C -0.114 4.114 5 C -0.114 4.114 6 C -0.115 4.115 7 C -0.078 4.078 8 H 0.089 0.911 9 C 0.142 3.858 10 N -0.731 5.731 11 C 0.691 3.309 12 O -0.643 6.643 13 N -0.628 5.628 14 C 0.110 3.890 15 C -0.125 4.125 16 C -0.105 4.105 17 C 0.039 3.961 18 H -0.015 1.015 19 C -0.536 4.536 20 H 0.063 0.937 21 C 0.008 3.992 22 N -0.916 5.916 23 Si 0.958 3.042 24 H -0.267 1.267 25 H -0.290 1.290 26 H -0.267 1.267 27 C 0.144 3.856 28 C -0.075 4.075 29 H 0.062 0.938 30 C -0.154 4.154 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.038 0.962 41 H 0.055 0.945 42 H 0.407 0.593 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.049 0.951 46 H 0.105 0.895 47 H 0.052 0.948 48 H 0.057 0.943 49 H 0.259 0.741 50 H 0.033 0.967 51 H 0.072 0.928 52 H 0.061 0.939 53 H 0.067 0.933 54 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.376 15.008 -18.044 26.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.098 4.098 3 H 0.094 0.906 4 C -0.152 4.152 5 C -0.151 4.151 6 C -0.153 4.153 7 C -0.097 4.097 8 H 0.107 0.893 9 C 0.018 3.982 10 N -0.391 5.391 11 C 0.393 3.607 12 O -0.525 6.525 13 N -0.364 5.364 14 C -0.012 4.012 15 C -0.163 4.163 16 C -0.143 4.143 17 C 0.020 3.980 18 H 0.003 0.997 19 C -0.575 4.575 20 H 0.081 0.919 21 C -0.191 4.191 22 N -0.554 5.554 23 Si 0.783 3.217 24 H -0.191 1.191 25 H -0.216 1.216 26 H -0.192 1.192 27 C 0.021 3.979 28 C -0.094 4.094 29 H 0.080 0.920 30 C -0.211 4.211 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.246 0.754 43 H 0.117 0.883 44 H 0.097 0.903 45 H 0.068 0.932 46 H 0.123 0.877 47 H 0.070 0.930 48 H 0.076 0.924 49 H 0.068 0.932 50 H 0.051 0.949 51 H 0.091 0.909 52 H 0.080 0.920 53 H 0.086 0.914 54 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.955 14.548 -17.304 25.574 hybrid contribution 0.580 -0.942 1.070 1.539 sum -11.375 13.606 -16.235 24.043 Atomic orbital electron populations 1.21883 0.94810 1.01764 1.02144 1.21102 0.95770 0.99489 0.93439 0.90611 1.21608 0.95389 1.00502 0.97679 1.21502 0.95728 1.01000 0.96895 1.21605 1.00408 0.99075 0.94225 1.21347 0.96112 0.99931 0.92320 0.89267 1.21337 0.78194 0.99641 0.99029 1.45102 1.07766 1.60180 1.26029 1.16247 0.82236 0.79386 0.82846 1.90870 1.68582 1.53995 1.39083 1.47678 1.03374 1.55439 1.29884 1.21863 0.94932 0.94744 0.89665 1.21900 0.97801 0.98762 0.97799 1.21507 0.97638 0.98855 0.96267 1.18982 0.92900 0.92351 0.93771 0.99709 1.21505 0.93842 1.31121 1.11020 0.91875 1.25930 0.96045 0.96849 1.00319 1.70110 1.11135 1.40016 1.34163 0.85610 0.78569 0.78735 0.78760 1.19142 1.21583 1.19219 1.21647 0.94443 0.92961 0.88882 1.21075 0.92944 0.99840 0.95552 0.91957 1.21983 1.01659 1.00594 0.96885 0.92187 0.91995 0.93156 0.92660 0.91002 0.91513 0.91012 0.91892 0.93031 0.94372 0.92673 0.75414 0.88289 0.90279 0.93212 0.87658 0.92962 0.92395 0.93228 0.94896 0.90933 0.92010 0.91441 0.93873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.84 71.98 0.64 -1.05 16 2 C -0.08 -0.99 2.25 -10.79 -0.02 -1.01 16 3 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 4 C -0.11 -1.37 5.20 30.59 0.16 -1.21 16 5 C -0.11 -1.41 5.92 30.59 0.18 -1.23 16 6 C -0.12 -1.92 5.08 30.59 0.16 -1.76 16 7 C -0.08 -1.39 1.75 -10.79 -0.02 -1.41 16 8 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 9 C 0.14 3.88 4.85 86.38 0.42 4.30 16 10 N -0.73 -22.06 5.20 -478.54 -2.49 -24.54 16 11 C 0.69 29.84 8.30 179.05 1.49 31.32 16 12 O -0.64 -35.28 15.78 -3.99 -0.06 -35.35 16 13 N -0.63 -26.07 2.97 -836.06 -2.48 -28.55 16 14 C 0.11 3.13 6.43 86.36 0.56 3.69 16 15 C -0.12 -3.64 6.08 30.67 0.19 -3.45 16 16 C -0.10 -4.07 5.10 30.62 0.16 -3.92 16 17 C 0.04 2.03 2.26 -11.32 -0.03 2.00 16 18 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 19 C -0.54 -30.08 8.56 25.60 0.22 -29.86 16 20 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 21 C 0.01 0.45 5.31 84.65 0.45 0.90 16 22 N -0.92 -57.26 11.41 21.45 0.24 -57.02 16 23 Si 0.96 45.10 29.54 68.60 2.03 47.12 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 C 0.14 7.44 5.42 86.51 0.47 7.91 16 28 C -0.08 -1.21 1.78 -10.80 -0.02 -1.23 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 C -0.15 -2.56 8.50 71.98 0.61 -1.95 16 31 H 0.06 0.67 6.43 -2.39 -0.02 0.65 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.06 1.04 7.18 -2.39 -0.02 1.03 16 39 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.06 1.65 6.17 -2.39 -0.01 1.64 16 42 H 0.41 9.18 5.11 -92.70 -0.47 8.71 16 43 H 0.10 2.03 5.57 -2.39 -0.01 2.01 16 44 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 49 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 50 H 0.03 1.69 8.14 -2.38 -0.02 1.67 16 51 H 0.07 4.53 5.18 -2.39 -0.01 4.52 16 52 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 53 H 0.07 0.98 6.43 -2.38 -0.02 0.96 16 54 H 0.04 0.88 6.32 -2.38 -0.02 0.87 16 Total: -1.00 -75.37 396.98 3.22 -72.15 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.38 Total: 24.14 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 5.60 Total: 2.04 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -4.72 Total: -110.11 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -0.06 Total: -35.35 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -75.37 3.22 -72.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595592657.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.766 kcal (2) G-P(sol) polarization free energy of solvation -75.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds