Wall clock time and date at job start Tue Mar 31 2020 15:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47312 * 2 1 4 4 C 1.53008 * 109.47089 * 240.00334 * 2 1 3 5 5 C 1.52995 * 109.46846 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47261 * 60.00277 * 5 4 2 7 7 C 1.53002 * 109.46670 * 299.99746 * 6 5 4 8 8 H 1.09003 * 109.46841 * 299.99793 * 7 6 5 9 9 C 1.53000 * 109.47049 * 180.02562 * 7 6 5 10 10 N 1.46500 * 109.47529 * 64.99258 * 9 7 6 11 11 C 1.34771 * 120.00352 * 180.02562 * 10 9 7 12 12 O 1.21595 * 119.99789 * 5.07854 * 11 10 9 13 13 N 1.34772 * 120.00316 * 185.07995 * 11 10 9 14 14 C 1.46931 * 120.63072 * 354.96394 * 13 11 10 15 15 C 1.53189 * 108.77338 * 126.41500 * 14 13 11 16 16 C 1.53035 * 109.31568 * 54.63730 * 15 14 13 17 17 C 1.53041 * 109.53825 * 298.63430 * 16 15 14 18 18 H 1.09001 * 109.49659 * 301.40869 * 17 16 15 19 19 C 1.50704 * 109.49848 * 181.34625 * 17 16 15 20 20 H 1.07998 * 119.99995 * 0.07080 * 19 17 16 21 21 C 1.37877 * 119.99823 * 180.02562 * 19 17 16 22 22 N 1.31513 * 119.99944 * 0.02562 * 21 19 17 23 23 Si 1.86805 * 119.99882 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46858 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46798 * 120.00164 * 23 21 19 26 26 H 1.48496 * 109.47250 * 240.00188 * 23 21 19 27 27 C 1.46995 * 120.61510 * 174.98927 * 13 11 10 28 28 C 1.52993 * 109.47030 * 120.00286 * 2 1 3 29 29 H 1.08995 * 109.47147 * 299.99505 * 28 2 1 30 30 C 1.53001 * 109.47456 * 60.00048 * 28 2 1 31 31 H 1.08994 * 109.47311 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46751 * 299.99966 * 1 2 3 33 33 H 1.09003 * 109.46902 * 59.99775 * 1 2 3 34 34 H 1.09006 * 109.46833 * 60.00092 * 4 2 1 35 35 H 1.08994 * 109.46960 * 299.99856 * 4 2 1 36 36 H 1.09003 * 109.47570 * 299.99675 * 5 4 2 37 37 H 1.09003 * 109.47077 * 179.97438 * 5 4 2 38 38 H 1.09000 * 109.47229 * 180.02562 * 6 5 4 39 39 H 1.08994 * 109.47340 * 59.99489 * 6 5 4 40 40 H 1.09005 * 109.46768 * 305.00058 * 9 7 6 41 41 H 1.08998 * 109.47318 * 184.99964 * 9 7 6 42 42 H 0.97001 * 120.00110 * 0.02562 * 10 9 7 43 43 H 1.09003 * 109.58486 * 6.63036 * 14 13 11 44 44 H 1.08995 * 109.70585 * 246.27463 * 14 13 11 45 45 H 1.09001 * 109.49997 * 294.68205 * 15 14 13 46 46 H 1.08997 * 109.52193 * 174.60687 * 15 14 13 47 47 H 1.08999 * 109.46248 * 178.60901 * 16 15 14 48 48 H 1.09000 * 109.44810 * 58.64260 * 16 15 14 49 49 H 0.97000 * 119.99638 * 179.97438 * 22 21 19 50 50 H 1.09004 * 109.58335 * 113.80843 * 27 13 11 51 51 H 1.09000 * 109.63011 * 353.35895 * 27 13 11 52 52 H 1.08991 * 109.47198 * 179.97438 * 30 28 2 53 53 H 1.08993 * 109.46866 * 300.00211 * 30 28 2 54 54 H 1.09003 * 109.46969 * 60.00045 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4416 -0.0004 7 6 3.5705 -0.7204 1.2489 8 1 3.9335 0.3074 1.2486 9 6 4.0815 -1.4410 2.4981 10 7 5.5415 -1.3367 2.5592 11 6 6.2153 -1.9016 3.5806 12 8 5.6226 -2.5755 4.4010 13 7 7.5459 -1.7195 3.6927 14 6 8.2936 -1.0012 2.6516 15 6 9.0880 0.1321 3.3082 16 6 9.9614 -0.4432 4.4254 17 6 9.0713 -1.0888 5.4899 18 1 8.3816 -0.3444 5.8878 19 6 9.9303 -1.6259 6.6056 20 1 11.0038 -1.5167 6.5610 21 6 9.3456 -2.2557 7.6837 22 7 8.0383 -2.3883 7.7381 23 14 10.4103 -2.9208 9.0671 24 1 11.8387 -2.6456 8.7684 25 1 10.0353 -2.2587 10.3423 26 1 10.2032 -4.3860 9.1905 27 6 8.2767 -2.2364 4.8587 28 6 2.0400 -0.7213 1.2492 29 1 1.6767 -0.2075 2.1391 30 6 1.5300 -2.1638 1.2491 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.6767 -0.2073 -2.1393 35 1 1.6767 -1.7488 -1.2494 36 1 3.9330 0.3072 -1.2498 37 1 3.9334 -1.2348 -2.1394 38 1 5.1705 -1.4408 -0.0004 39 1 3.7176 -2.4694 -0.0002 40 1 3.7938 -2.4915 2.4547 41 1 3.6469 -0.9816 3.3859 42 1 6.0233 -0.8611 1.8645 43 1 7.5975 -0.5852 1.9231 44 1 8.9788 -1.6862 2.1523 45 1 8.3981 0.8651 3.7266 46 1 9.7211 0.6128 2.5624 47 1 10.5462 0.3576 4.8780 48 1 10.6338 -1.1939 4.0103 49 1 7.6270 -2.8318 8.4965 50 1 8.9609 -3.0235 4.5416 51 1 7.5699 -2.6352 5.5865 52 1 1.8937 -2.6777 2.1388 53 1 0.4401 -2.1638 1.2491 54 1 1.8934 -2.6776 0.3591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595592658.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:04 Heat of formation + Delta-G solvation = -80.513357 kcal Electronic energy + Delta-G solvation = -28866.389855 eV Core-core repulsion = 25221.763041 eV Total energy + Delta-G solvation = -3644.626815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.44294 -40.51669 -38.46879 -36.14378 -35.23954 -33.62898 -33.34455 -32.63950 -31.45214 -28.88255 -27.24312 -26.85983 -26.40615 -25.24635 -23.44231 -22.78123 -21.80981 -21.42941 -20.37957 -19.26876 -18.95054 -18.20152 -17.35161 -16.63922 -16.56819 -16.41172 -15.98725 -15.35677 -15.26513 -15.18617 -15.07467 -14.74392 -14.58976 -14.30900 -14.23834 -14.00307 -13.57077 -13.51639 -13.44906 -13.29286 -12.91111 -12.71973 -12.66772 -12.56727 -12.36400 -12.27584 -12.20622 -12.06803 -11.84605 -11.76505 -11.62922 -11.49780 -11.22961 -11.04034 -10.98830 -10.90337 -10.77319 -10.73566 -10.51920 -10.10859 -9.23632 -8.09762 -6.27045 1.39712 1.41241 1.53445 1.81161 2.27934 2.42260 3.06076 3.20546 3.63355 3.73616 3.79706 4.04865 4.14965 4.17206 4.23189 4.28859 4.34627 4.43931 4.46709 4.52384 4.58224 4.60985 4.73026 4.74271 4.78264 4.81667 4.81860 4.84001 4.91966 4.96607 5.06721 5.09260 5.11437 5.14262 5.21862 5.26992 5.27509 5.29356 5.30615 5.34493 5.40252 5.47395 5.48797 5.55352 5.57201 5.63335 5.66484 5.74867 5.90067 5.98776 6.18943 6.36940 6.86540 7.16235 7.43007 7.70785 8.93695 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.023318 B = 0.002671 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.513806 B =10479.044470 C =11258.168383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 H 0.071 0.929 4 C -0.115 4.115 5 C -0.114 4.114 6 C -0.115 4.115 7 C -0.080 4.080 8 H 0.084 0.916 9 C 0.144 3.856 10 N -0.731 5.731 11 C 0.692 3.308 12 O -0.643 6.643 13 N -0.628 5.628 14 C 0.110 3.890 15 C -0.125 4.125 16 C -0.105 4.105 17 C 0.038 3.962 18 H -0.015 1.015 19 C -0.534 4.534 20 H 0.063 0.937 21 C 0.007 3.993 22 N -0.916 5.916 23 Si 0.958 3.042 24 H -0.259 1.259 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.144 3.856 28 C -0.076 4.076 29 H 0.064 0.936 30 C -0.155 4.155 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.039 0.961 42 H 0.406 0.594 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.049 0.951 46 H 0.105 0.895 47 H 0.052 0.948 48 H 0.057 0.943 49 H 0.259 0.741 50 H 0.032 0.968 51 H 0.073 0.927 52 H 0.039 0.961 53 H 0.064 0.936 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.652 6.624 -23.121 26.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 H 0.089 0.911 4 C -0.152 4.152 5 C -0.152 4.152 6 C -0.152 4.152 7 C -0.099 4.099 8 H 0.102 0.898 9 C 0.020 3.980 10 N -0.391 5.391 11 C 0.393 3.607 12 O -0.525 6.525 13 N -0.364 5.364 14 C -0.012 4.012 15 C -0.163 4.163 16 C -0.143 4.143 17 C 0.019 3.981 18 H 0.003 0.997 19 C -0.572 4.572 20 H 0.081 0.919 21 C -0.192 4.192 22 N -0.554 5.554 23 Si 0.784 3.216 24 H -0.183 1.183 25 H -0.209 1.209 26 H -0.209 1.209 27 C 0.021 3.979 28 C -0.095 4.095 29 H 0.083 0.917 30 C -0.212 4.212 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.246 0.754 43 H 0.117 0.883 44 H 0.097 0.903 45 H 0.068 0.932 46 H 0.123 0.877 47 H 0.071 0.929 48 H 0.076 0.924 49 H 0.068 0.932 50 H 0.051 0.949 51 H 0.091 0.909 52 H 0.059 0.941 53 H 0.083 0.917 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.215 6.087 -22.434 25.809 hybrid contribution 0.518 -0.452 1.360 1.524 sum -10.697 5.635 -21.074 24.297 Atomic orbital electron populations 1.21880 0.94841 1.02092 1.01789 1.21085 0.95756 0.99165 0.93926 0.91054 1.21634 0.95381 1.00885 0.97297 1.21500 0.95743 1.00883 0.97025 1.21623 1.00289 0.99510 0.93800 1.21341 0.96144 0.99757 0.92661 0.89796 1.21295 0.78078 1.00336 0.98266 1.45111 1.07731 1.59833 1.26422 1.16246 0.82091 0.80268 0.82109 1.90872 1.68980 1.46537 1.46139 1.47691 1.05349 1.58961 1.24383 1.21852 0.95811 0.94283 0.89251 1.21902 0.98800 0.97130 0.98465 1.21504 0.97667 0.99301 0.95783 1.18924 0.93416 0.92777 0.93003 0.99716 1.21556 0.93668 1.37503 1.04518 0.91870 1.25929 0.95993 0.96372 1.00899 1.70115 1.10654 1.43525 1.31137 0.85499 0.79464 0.77767 0.78897 1.18293 1.20884 1.20923 1.21577 0.94646 0.96637 0.85069 1.21055 0.92973 0.96855 0.98643 0.91725 1.22046 1.01431 0.96064 1.01688 0.92327 0.93003 0.92047 0.91268 0.91836 0.91435 0.91301 0.91932 0.92084 0.92993 0.94222 0.75415 0.88312 0.90263 0.93216 0.87653 0.92944 0.92395 0.93233 0.94930 0.90858 0.94142 0.91668 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.84 71.98 0.64 -1.07 16 2 C -0.08 -1.01 2.49 -10.79 -0.03 -1.04 16 3 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 4 C -0.11 -1.28 4.93 30.60 0.15 -1.13 16 5 C -0.11 -1.32 5.92 30.59 0.18 -1.13 16 6 C -0.11 -1.74 4.80 30.60 0.15 -1.60 16 7 C -0.08 -1.43 2.00 -10.78 -0.02 -1.45 16 8 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 9 C 0.14 3.94 4.57 86.38 0.39 4.33 16 10 N -0.73 -22.06 5.20 -478.54 -2.49 -24.55 16 11 C 0.69 29.84 8.30 179.06 1.49 31.33 16 12 O -0.64 -35.28 15.79 -4.02 -0.06 -35.35 16 13 N -0.63 -26.09 2.97 -836.72 -2.49 -28.57 16 14 C 0.11 3.14 6.43 86.36 0.56 3.69 16 15 C -0.12 -3.65 6.08 30.67 0.19 -3.47 16 16 C -0.10 -4.07 5.11 30.62 0.16 -3.91 16 17 C 0.04 1.97 2.25 -11.46 -0.03 1.94 16 18 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 19 C -0.53 -29.92 8.56 25.60 0.22 -29.70 16 20 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 21 C 0.01 0.42 5.30 84.65 0.45 0.87 16 22 N -0.92 -57.16 11.40 21.45 0.24 -56.91 16 23 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 24 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 25 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 26 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 27 C 0.14 7.44 5.39 86.35 0.47 7.91 16 28 C -0.08 -1.24 2.25 -10.78 -0.02 -1.26 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 C -0.16 -2.64 7.80 71.98 0.56 -2.08 16 31 H 0.06 0.67 6.43 -2.39 -0.02 0.66 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.06 0.76 6.43 -2.39 -0.02 0.74 16 36 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.06 0.94 7.18 -2.39 -0.02 0.92 16 39 H 0.06 1.04 6.43 -2.39 -0.02 1.02 16 40 H 0.05 1.57 6.71 -2.38 -0.02 1.56 16 41 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.41 9.19 5.11 -92.71 -0.47 8.72 16 43 H 0.10 2.03 5.57 -2.39 -0.01 2.01 16 44 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 50 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 51 H 0.07 4.58 5.16 -2.39 -0.01 4.56 16 52 H 0.04 0.84 6.55 -2.39 -0.02 0.83 16 53 H 0.06 0.97 6.43 -2.39 -0.02 0.96 16 54 H 0.07 1.05 4.81 -2.39 -0.01 1.04 16 Total: -1.00 -75.34 390.37 3.12 -72.22 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 0.40 Total: 23.79 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 5.49 Total: 2.23 kcal Atomic # 7 Polarization: -105.31 SS G_CDS: -4.73 Total: -110.04 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -0.06 Total: -35.35 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -75.34 3.12 -72.22 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595592658.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.297 kcal (2) G-P(sol) polarization free energy of solvation -75.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds