Wall clock time and date at job start Tue Mar 31 2020 15:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46921 * 2 1 4 4 C 1.52995 * 109.47061 * 239.99392 * 2 1 3 5 5 C 1.53004 * 109.47061 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46811 * 60.00306 * 5 4 2 7 7 C 1.52999 * 109.47308 * 300.00161 * 6 5 4 8 8 H 1.09000 * 109.46978 * 299.99808 * 7 6 5 9 9 C 1.53001 * 109.47162 * 180.02562 * 7 6 5 10 10 N 1.46499 * 109.47325 * 64.99962 * 9 7 6 11 11 C 1.34770 * 119.99797 * 180.02562 * 10 9 7 12 12 O 1.21584 * 120.00622 * 4.96353 * 11 10 9 13 13 N 1.34784 * 120.00068 * 184.97369 * 11 10 9 14 14 C 1.46924 * 120.62840 * 354.65505 * 13 11 10 15 15 C 1.53188 * 108.77685 * 233.59198 * 14 13 11 16 16 C 1.53045 * 109.31332 * 305.36419 * 15 14 13 17 17 C 1.53038 * 109.53432 * 61.36283 * 16 15 14 18 18 H 1.09003 * 109.49942 * 58.62541 * 17 16 15 19 19 C 1.50709 * 109.49463 * 178.68435 * 17 16 15 20 20 H 1.08000 * 119.99631 * 34.85132 * 19 17 16 21 21 C 1.37876 * 120.00057 * 214.84158 * 19 17 16 22 22 N 1.31516 * 119.99899 * 354.80342 * 21 19 17 23 23 Si 1.86800 * 119.99863 * 174.79974 * 21 19 17 24 24 H 1.48504 * 109.46841 * 90.00217 * 23 21 19 25 25 H 1.48495 * 109.47338 * 330.00523 * 23 21 19 26 26 H 1.48493 * 109.47130 * 210.00246 * 23 21 19 27 27 C 1.46928 * 120.63350 * 174.63696 * 13 11 10 28 28 C 1.52997 * 109.47252 * 59.99686 * 7 6 5 29 29 H 1.09001 * 109.47018 * 180.02562 * 28 7 6 30 30 C 1.53005 * 109.46951 * 60.00736 * 28 7 6 31 31 H 1.09001 * 109.47082 * 300.00330 * 1 2 3 32 32 H 1.09000 * 109.46733 * 60.00123 * 1 2 3 33 33 H 1.09000 * 109.47374 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47483 * 300.00493 * 4 2 1 35 35 H 1.09000 * 109.46951 * 60.00619 * 4 2 1 36 36 H 1.09001 * 109.47082 * 180.02562 * 5 4 2 37 37 H 1.08995 * 109.46921 * 300.00608 * 5 4 2 38 38 H 1.08997 * 109.47143 * 179.97438 * 6 5 4 39 39 H 1.09006 * 109.47352 * 60.00018 * 6 5 4 40 40 H 1.09003 * 109.46640 * 304.99440 * 9 7 6 41 41 H 1.08999 * 109.47151 * 184.99828 * 9 7 6 42 42 H 0.96998 * 119.99980 * 359.97438 * 10 9 7 43 43 H 1.08992 * 109.58863 * 113.80267 * 14 13 11 44 44 H 1.09000 * 109.58566 * 353.37639 * 14 13 11 45 45 H 1.08997 * 109.49970 * 185.41517 * 15 14 13 46 46 H 1.08998 * 109.52893 * 65.33029 * 15 14 13 47 47 H 1.08997 * 109.45523 * 301.34915 * 16 15 14 48 48 H 1.08998 * 109.45102 * 181.38183 * 16 15 14 49 49 H 0.97003 * 120.00220 * 4.95933 * 22 21 19 50 50 H 1.08999 * 109.58363 * 6.62396 * 27 13 11 51 51 H 1.08998 * 109.58174 * 246.20109 * 27 13 11 52 52 H 1.09001 * 109.47333 * 59.99319 * 30 28 7 53 53 H 1.08997 * 109.47291 * 180.02562 * 30 28 7 54 54 H 1.09005 * 109.46474 * 299.99968 * 30 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5701 -0.7208 -1.2494 6 6 4.0805 -1.4416 -0.0002 7 6 3.5705 -0.7204 1.2490 8 1 3.9335 0.3074 1.2488 9 6 4.0814 -1.4408 2.4983 10 7 5.5414 -1.3364 2.5595 11 6 6.2152 -1.9012 3.5810 12 8 5.6223 -2.5734 4.4025 13 7 7.5462 -1.7208 3.6920 14 6 8.2951 -1.0103 2.6464 15 6 9.4578 -1.8947 2.1854 16 6 10.2999 -2.2968 3.3985 17 6 9.4389 -3.1011 4.3751 18 1 9.0469 -3.9849 3.8717 19 6 10.2772 -3.5241 5.5539 20 1 11.0553 -2.8732 5.9244 21 6 10.0508 -4.7419 6.1593 22 7 9.0390 -5.4892 5.7752 23 14 11.1811 -5.3306 7.5251 24 1 10.6602 -4.8628 8.8348 25 1 12.5443 -4.7823 7.3103 26 1 11.2373 -6.8144 7.5161 27 6 8.2759 -2.2304 4.8610 28 6 2.0405 -0.7208 1.2493 29 1 1.6772 -0.2066 2.1390 30 6 1.5310 -2.1635 1.2498 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.6766 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1391 36 1 3.9334 -1.2343 -2.1396 37 1 3.9330 0.3070 -1.2497 38 1 5.1705 -1.4417 -0.0006 39 1 3.7175 -2.4695 0.0001 40 1 3.7937 -2.4913 2.4551 41 1 3.6469 -0.9813 3.3861 42 1 6.0232 -0.8614 1.8644 43 1 8.6844 -0.0747 3.0475 44 1 7.6370 -0.8028 1.8026 45 1 10.0777 -1.3419 1.4794 46 1 9.0657 -2.7895 1.7021 47 1 10.6718 -1.4007 3.8953 48 1 11.1420 -2.9059 3.0700 49 1 8.4954 -5.2181 5.0189 50 1 7.6052 -2.8280 5.4783 51 1 8.6636 -1.3942 5.4427 52 1 1.8947 -2.6771 2.1398 53 1 0.4410 -2.1639 1.2495 54 1 1.8944 -2.6774 0.3598 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595592659.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:08 Heat of formation + Delta-G solvation = -86.467511 kcal Electronic energy + Delta-G solvation = -28822.278696 eV Core-core repulsion = 25177.393690 eV Total energy + Delta-G solvation = -3644.885006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.57477 -40.59033 -38.65249 -36.24419 -35.50575 -33.65480 -33.37201 -32.72769 -31.47444 -28.90576 -27.17485 -26.63144 -26.45657 -25.37034 -23.59641 -22.82010 -22.07264 -21.49886 -20.60802 -19.37289 -19.06509 -18.54940 -17.46520 -16.74152 -16.49245 -16.13861 -15.80845 -15.66220 -15.42528 -15.30225 -15.19513 -14.94771 -14.73886 -14.45781 -14.31709 -13.91065 -13.59827 -13.53443 -13.36185 -13.32765 -13.31110 -12.73640 -12.69588 -12.61680 -12.39668 -12.26850 -12.09980 -11.95982 -11.90913 -11.82792 -11.71657 -11.52489 -11.28570 -11.11754 -11.06981 -10.90286 -10.77595 -10.63652 -10.50168 -10.21195 -9.38456 -8.63121 -6.34276 1.51847 1.59521 1.69133 1.78055 2.11442 2.57623 2.95064 3.20489 3.59420 3.70127 3.76012 3.94887 4.05174 4.11006 4.13617 4.21507 4.30198 4.40539 4.42504 4.43349 4.49365 4.54842 4.56374 4.64822 4.70649 4.71524 4.75453 4.79209 4.85620 4.91002 4.93254 4.98611 5.04346 5.06902 5.09229 5.11501 5.15871 5.19737 5.24555 5.27852 5.37299 5.43028 5.44747 5.47362 5.52753 5.55095 5.56841 5.65945 5.72053 5.98013 6.12247 6.20623 6.61912 7.01386 7.48536 7.55815 8.75501 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.024183 B = 0.002597 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.560561 B =10778.939980 C =11404.617685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 H 0.074 0.926 4 C -0.116 4.116 5 C -0.114 4.114 6 C -0.117 4.117 7 C -0.079 4.079 8 H 0.090 0.910 9 C 0.143 3.857 10 N -0.728 5.728 11 C 0.692 3.308 12 O -0.647 6.647 13 N -0.628 5.628 14 C 0.113 3.887 15 C -0.127 4.127 16 C -0.099 4.099 17 C 0.016 3.984 18 H -0.003 1.003 19 C -0.603 4.603 20 H 0.055 0.945 21 C -0.037 4.037 22 N -0.939 5.939 23 Si 1.118 2.882 24 H -0.277 1.277 25 H -0.263 1.263 26 H -0.287 1.287 27 C 0.152 3.848 28 C -0.075 4.075 29 H 0.070 0.930 30 C -0.157 4.157 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.049 0.951 42 H 0.408 0.592 43 H 0.086 0.914 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.045 0.955 47 H 0.060 0.940 48 H 0.046 0.954 49 H 0.254 0.746 50 H 0.030 0.970 51 H 0.055 0.945 52 H 0.039 0.961 53 H 0.065 0.935 54 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.526 16.049 -18.257 27.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.098 4.098 3 H 0.093 0.907 4 C -0.153 4.153 5 C -0.151 4.151 6 C -0.155 4.155 7 C -0.098 4.098 8 H 0.108 0.892 9 C 0.019 3.981 10 N -0.387 5.387 11 C 0.393 3.607 12 O -0.529 6.529 13 N -0.364 5.364 14 C -0.009 4.009 15 C -0.165 4.165 16 C -0.137 4.137 17 C -0.004 4.004 18 H 0.016 0.984 19 C -0.641 4.641 20 H 0.073 0.927 21 C -0.235 4.235 22 N -0.576 5.576 23 Si 0.939 3.061 24 H -0.203 1.203 25 H -0.187 1.187 26 H -0.213 1.213 27 C 0.028 3.972 28 C -0.094 4.094 29 H 0.088 0.912 30 C -0.214 4.214 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.247 0.753 43 H 0.104 0.896 44 H 0.119 0.881 45 H 0.125 0.875 46 H 0.064 0.936 47 H 0.078 0.922 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.049 0.951 51 H 0.073 0.927 52 H 0.058 0.942 53 H 0.084 0.916 54 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.738 14.395 -16.599 25.396 hybrid contribution -0.176 0.715 -0.840 1.117 sum -12.914 15.110 -17.438 26.442 Atomic orbital electron populations 1.21882 0.94832 1.02024 1.01885 1.21081 0.95751 0.99249 0.93766 0.90715 1.21640 0.95321 1.00822 0.97521 1.21493 0.95798 1.00947 0.96870 1.21635 1.00188 0.99446 0.94190 1.21332 0.96202 0.99895 0.92376 0.89217 1.21339 0.77880 1.00247 0.98669 1.45110 1.07859 1.59673 1.26101 1.16249 0.82042 0.80025 0.82357 1.90872 1.69118 1.46343 1.46577 1.47645 1.05123 1.59639 1.24020 1.21867 0.93900 0.95192 0.89911 1.21937 0.97146 0.99652 0.97800 1.21460 0.97616 0.99103 0.95495 1.19198 0.92706 0.93349 0.95147 0.98449 1.22284 1.19583 1.05021 1.17220 0.92717 1.27407 0.98060 0.94542 1.03470 1.70890 1.17480 1.42703 1.26544 0.82946 0.74363 0.75729 0.73031 1.20311 1.18712 1.21270 1.21610 0.93032 0.96357 0.86178 1.21048 0.92883 0.96633 0.98830 0.91201 1.22062 1.01489 0.96301 1.01538 0.92769 0.92068 0.92521 0.92114 0.91238 0.91606 0.91133 0.92131 0.92527 0.93530 0.93261 0.75273 0.89626 0.88057 0.87482 0.93630 0.92175 0.93508 0.93563 0.95102 0.92668 0.94202 0.91608 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.84 71.98 0.64 -0.95 16 2 C -0.08 -0.92 2.49 -10.79 -0.03 -0.95 16 3 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 4 C -0.12 -1.28 4.93 30.59 0.15 -1.13 16 5 C -0.11 -1.32 5.92 30.60 0.18 -1.13 16 6 C -0.12 -1.80 4.80 30.59 0.15 -1.66 16 7 C -0.08 -1.30 2.00 -10.79 -0.02 -1.32 16 8 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 9 C 0.14 3.65 4.57 86.38 0.39 4.04 16 10 N -0.73 -20.60 5.19 -478.54 -2.48 -23.09 16 11 C 0.69 28.35 8.29 179.05 1.49 29.83 16 12 O -0.65 -34.05 15.77 -3.98 -0.06 -34.11 16 13 N -0.63 -24.64 2.97 -836.94 -2.49 -27.12 16 14 C 0.11 3.04 6.39 86.36 0.55 3.59 16 15 C -0.13 -3.71 6.08 30.67 0.19 -3.52 16 16 C -0.10 -3.88 5.15 30.62 0.16 -3.72 16 17 C 0.02 0.81 2.14 -11.46 -0.02 0.78 16 18 H 0.00 -0.16 6.41 -2.39 -0.02 -0.18 16 19 C -0.60 -34.17 8.31 25.60 0.21 -33.96 16 20 H 0.05 2.99 7.82 -2.91 -0.02 2.97 16 21 C -0.04 -2.19 5.45 84.65 0.46 -1.72 16 22 N -0.94 -61.22 13.63 21.45 0.29 -60.93 16 23 Si 1.12 51.84 29.91 68.60 2.05 53.89 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 25 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 26 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 27 C 0.15 7.44 5.71 86.36 0.49 7.93 16 28 C -0.07 -1.12 2.25 -10.79 -0.02 -1.14 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 C -0.16 -2.64 7.80 71.98 0.56 -2.08 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.63 6.43 -2.39 -0.02 0.62 16 34 H 0.06 0.75 6.43 -2.39 -0.02 0.74 16 35 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.06 0.94 7.18 -2.39 -0.02 0.92 16 39 H 0.06 1.03 6.43 -2.38 -0.02 1.01 16 40 H 0.05 1.40 6.71 -2.39 -0.02 1.38 16 41 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.41 8.51 5.15 -92.71 -0.48 8.03 16 43 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.10 1.93 5.65 -2.39 -0.01 1.92 16 45 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 49 H 0.25 17.19 6.55 -92.71 -0.61 16.58 16 50 H 0.03 1.81 7.00 -2.39 -0.02 1.80 16 51 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 52 H 0.04 0.83 6.55 -2.39 -0.02 0.81 16 53 H 0.07 0.97 6.43 -2.39 -0.02 0.95 16 54 H 0.06 1.04 4.81 -2.38 -0.01 1.03 16 Total: -1.00 -77.93 391.56 3.39 -74.54 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: 0.56 Total: 23.94 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 5.52 Total: -7.12 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -4.68 Total: -111.14 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -0.06 Total: -34.11 kcal Atomic # 14 Polarization: 51.84 SS G_CDS: 2.05 Total: 53.89 kcal Total: -77.93 3.39 -74.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595592659.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.923 kcal (2) G-P(sol) polarization free energy of solvation -77.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds