Wall clock time and date at job start Tue Mar 31 2020 15:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47072 * 2 1 4 4 C 1.52994 * 109.47528 * 239.99480 * 2 1 3 5 5 C 1.52998 * 109.47420 * 179.97438 * 4 2 1 6 6 C 1.53007 * 109.46912 * 60.00497 * 5 4 2 7 7 C 1.52994 * 109.46672 * 299.99961 * 6 5 4 8 8 H 1.09007 * 109.47369 * 299.99636 * 7 6 5 9 9 N 1.46505 * 109.46937 * 179.97438 * 7 6 5 10 10 C 1.34778 * 119.99960 * 85.00260 * 9 7 6 11 11 O 1.21282 * 119.99865 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00099 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47354 * 179.97438 * 12 10 9 14 14 C 1.46843 * 110.99970 * 294.20914 * 13 12 10 15 15 C 1.53042 * 109.52278 * 174.15687 * 14 13 12 16 16 C 1.53127 * 109.27596 * 59.17923 * 15 14 13 17 17 C 1.53123 * 109.15019 * 302.34079 * 16 15 14 18 18 H 1.08997 * 109.51083 * 297.71779 * 17 16 15 19 19 C 1.50704 * 109.49150 * 177.60758 * 17 16 15 20 20 H 1.08001 * 119.99790 * 240.20543 * 19 17 16 21 21 C 1.37879 * 120.00329 * 60.19685 * 19 17 16 22 22 N 1.31518 * 119.99424 * 0.02562 * 21 19 17 23 23 Si 1.86796 * 120.00247 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46685 * 60.00535 * 23 21 19 25 25 H 1.48497 * 109.47185 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47178 * 300.00769 * 23 21 19 27 27 C 1.46847 * 110.99982 * 169.99549 * 13 12 10 28 28 C 1.52997 * 109.47528 * 59.99974 * 7 6 5 29 29 H 1.08997 * 109.47486 * 179.97438 * 28 7 6 30 30 C 1.53005 * 109.47031 * 59.99852 * 28 7 6 31 31 H 1.08994 * 109.46827 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47486 * 300.00506 * 1 2 3 33 33 H 1.08999 * 109.47232 * 60.00649 * 1 2 3 34 34 H 1.09005 * 109.46734 * 60.00083 * 4 2 1 35 35 H 1.08997 * 109.47420 * 300.00494 * 4 2 1 36 36 H 1.08997 * 109.47917 * 300.00418 * 5 4 2 37 37 H 1.08997 * 109.47378 * 180.02562 * 5 4 2 38 38 H 1.08993 * 109.47229 * 179.97438 * 6 5 4 39 39 H 1.08997 * 109.46773 * 59.99837 * 6 5 4 40 40 H 0.97001 * 119.99947 * 265.00097 * 9 7 6 41 41 H 1.09000 * 109.46915 * 59.99330 * 12 10 9 42 42 H 1.09003 * 109.46819 * 299.99801 * 12 10 9 43 43 H 1.08993 * 109.46313 * 294.17341 * 14 13 12 44 44 H 1.09004 * 109.46429 * 54.14692 * 14 13 12 45 45 H 1.08997 * 109.50758 * 179.11703 * 15 14 13 46 46 H 1.08999 * 109.50480 * 299.24136 * 15 14 13 47 47 H 1.09003 * 109.52393 * 62.24889 * 16 15 14 48 48 H 1.08997 * 109.52177 * 182.37978 * 16 15 14 49 49 H 0.97000 * 119.99419 * 179.97438 * 22 21 19 50 50 H 1.09002 * 109.46481 * 305.85957 * 27 13 12 51 51 H 1.08994 * 109.46283 * 65.83811 * 27 13 12 52 52 H 1.08999 * 109.46886 * 60.00066 * 30 28 7 53 53 H 1.09007 * 109.47010 * 180.02562 * 30 28 7 54 54 H 1.08998 * 109.46704 * 299.99707 * 30 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5700 -0.7207 -1.2494 6 6 4.0805 -1.4417 -0.0001 7 6 3.5704 -0.7203 1.2490 8 1 3.9335 0.3075 1.2488 9 7 4.0587 -1.4109 2.4453 10 6 5.2806 -1.1250 2.9369 11 8 5.9762 -0.2964 2.3887 12 6 5.7831 -1.8358 4.1671 13 7 7.1299 -1.3509 4.4970 14 6 8.0936 -1.7235 3.4537 15 6 9.4491 -1.0805 3.7562 16 6 9.9407 -1.5580 5.1256 17 6 8.8966 -1.2002 6.1869 18 1 8.7820 -0.1173 6.2344 19 6 9.3456 -1.7187 7.5288 20 1 8.7368 -2.4333 8.0628 21 6 10.5336 -1.2809 8.0748 22 7 11.2747 -0.4105 7.4246 23 14 11.0897 -1.9231 9.7384 24 1 11.2475 -3.3982 9.6720 25 1 12.3891 -1.3016 10.0997 26 1 10.0744 -1.5796 10.7662 27 6 7.5573 -1.8400 5.8140 28 6 2.0405 -0.7208 1.2493 29 1 1.6771 -0.2073 2.1394 30 6 1.5309 -2.1635 1.2497 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3634 0.5137 -0.8900 34 1 1.6767 -0.2075 -2.1391 35 1 1.6767 -1.7489 -1.2491 36 1 3.9331 0.3070 -1.2496 37 1 3.9334 -1.2342 -2.1395 38 1 5.1704 -1.4417 -0.0005 39 1 3.7175 -2.4694 0.0001 40 1 3.5025 -2.0739 2.8835 41 1 5.8199 -2.9085 3.9773 42 1 5.1105 -1.6373 5.0016 43 1 8.2031 -2.8077 3.4309 44 1 7.7341 -1.3744 2.4857 45 1 10.1684 -1.3700 2.9902 46 1 9.3432 0.0043 3.7656 47 1 10.0838 -2.6384 5.1048 48 1 10.8857 -1.0698 5.3638 49 1 12.1103 -0.1022 7.8088 50 1 6.8082 -1.5756 6.5604 51 1 7.6694 -2.9236 5.7801 52 1 1.8946 -2.6770 2.1397 53 1 0.4409 -2.1639 1.2494 54 1 1.8942 -2.6773 0.3597 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595609019.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:49 Heat of formation + Delta-G solvation = -80.767308 kcal Electronic energy + Delta-G solvation = -28538.524294 eV Core-core repulsion = 24893.886467 eV Total energy + Delta-G solvation = -3644.637827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.45272 -40.20314 -38.97743 -35.59885 -35.35942 -33.63603 -33.43778 -31.67194 -31.56832 -28.84338 -27.66506 -26.89420 -26.56199 -24.03462 -23.27705 -22.91338 -22.29778 -21.18341 -20.38049 -19.43411 -18.44490 -18.00642 -17.27897 -16.69543 -16.45321 -16.33928 -16.06362 -15.74217 -15.41386 -15.20397 -14.94342 -14.81775 -14.50548 -14.31088 -14.23729 -13.90259 -13.77196 -13.45186 -13.30955 -13.18286 -12.82520 -12.76865 -12.76350 -12.55661 -12.52227 -12.46902 -12.25590 -12.10644 -11.82019 -11.73426 -11.57187 -11.46689 -11.30796 -11.12048 -11.06946 -10.97851 -10.66862 -10.55281 -10.31126 -9.95372 -9.11244 -8.05685 -6.20729 1.43071 1.45053 1.52515 1.71051 2.11930 2.45173 3.15332 3.21134 3.65688 3.73449 3.84077 3.94785 4.14480 4.16792 4.20618 4.23890 4.31439 4.38034 4.40355 4.42391 4.49857 4.51316 4.58221 4.62511 4.74264 4.75206 4.76315 4.84752 4.87472 4.95829 4.98476 5.04707 5.05713 5.11720 5.14309 5.16341 5.18810 5.23799 5.31034 5.37744 5.39491 5.44967 5.50505 5.51214 5.62083 5.64786 5.69708 5.95429 6.11159 6.20864 6.22787 6.45715 6.67144 6.92447 7.37732 7.47258 8.99196 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.031818 B = 0.002292 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.803171 B =12213.588269 C =12684.619468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 H 0.059 0.941 4 C -0.111 4.111 5 C -0.116 4.116 6 C -0.125 4.125 7 C 0.152 3.848 8 H 0.055 0.945 9 N -0.715 5.715 10 C 0.514 3.486 11 O -0.563 6.563 12 C 0.035 3.965 13 N -0.542 5.542 14 C 0.070 3.930 15 C -0.108 4.108 16 C -0.102 4.102 17 C 0.051 3.949 18 H -0.009 1.009 19 C -0.533 4.533 20 H 0.058 0.942 21 C 0.009 3.991 22 N -0.919 5.919 23 Si 0.958 3.042 24 H -0.269 1.269 25 H -0.287 1.287 26 H -0.270 1.270 27 C 0.083 3.917 28 C -0.085 4.085 29 H 0.073 0.927 30 C -0.153 4.153 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.036 0.964 39 H 0.080 0.920 40 H 0.412 0.588 41 H 0.081 0.919 42 H 0.120 0.880 43 H 0.028 0.972 44 H 0.079 0.921 45 H 0.064 0.936 46 H 0.039 0.961 47 H 0.027 0.973 48 H 0.056 0.944 49 H 0.259 0.741 50 H 0.067 0.933 51 H 0.026 0.974 52 H 0.059 0.941 53 H 0.073 0.927 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.225 -5.571 -16.847 30.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 H 0.077 0.923 4 C -0.148 4.148 5 C -0.154 4.154 6 C -0.164 4.164 7 C 0.048 3.952 8 H 0.073 0.927 9 N -0.369 5.369 10 C 0.301 3.699 11 O -0.441 6.441 12 C -0.096 4.096 13 N -0.267 5.267 14 C -0.057 4.057 15 C -0.146 4.146 16 C -0.140 4.140 17 C 0.032 3.968 18 H 0.009 0.991 19 C -0.572 4.572 20 H 0.076 0.924 21 C -0.189 4.189 22 N -0.558 5.558 23 Si 0.784 3.216 24 H -0.194 1.194 25 H -0.213 1.213 26 H -0.195 1.195 27 C -0.044 4.044 28 C -0.104 4.104 29 H 0.092 0.908 30 C -0.210 4.210 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.055 0.945 39 H 0.098 0.902 40 H 0.250 0.750 41 H 0.099 0.901 42 H 0.138 0.862 43 H 0.046 0.954 44 H 0.097 0.903 45 H 0.083 0.917 46 H 0.058 0.942 47 H 0.046 0.954 48 H 0.075 0.925 49 H 0.068 0.932 50 H 0.085 0.915 51 H 0.045 0.955 52 H 0.078 0.922 53 H 0.092 0.908 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.590 -4.374 -17.192 29.516 hybrid contribution 0.859 -0.883 1.172 1.700 sum -22.731 -5.257 -16.021 28.302 Atomic orbital electron populations 1.21842 0.93753 1.02646 1.01922 1.21092 0.96527 0.98809 0.93967 0.92258 1.21631 0.94100 1.01602 0.97501 1.21481 0.96712 1.00182 0.97047 1.21882 0.99416 1.00538 0.94514 1.20923 0.94614 0.95669 0.84004 0.92700 1.46011 1.17077 1.43947 1.29863 1.20835 0.81631 0.82175 0.85249 1.90667 1.57097 1.34906 1.61430 1.22051 0.92238 0.98347 0.96928 1.61553 1.01303 1.61033 1.02826 1.22028 0.92156 0.96469 0.95092 1.21537 0.95970 0.99504 0.97593 1.21464 1.01200 0.97750 0.93570 1.18591 0.90708 0.94234 0.93241 0.99117 1.21488 1.05836 1.25694 1.04171 0.92362 1.25804 0.96822 0.95204 1.01073 1.70067 1.13837 1.32372 1.39530 0.85613 0.77338 0.78674 0.80010 1.19417 1.21278 1.19478 1.22029 0.97842 0.96144 0.88345 1.21321 0.91642 0.98428 0.99024 0.90825 1.22025 1.02091 0.94472 1.02414 0.91363 0.92739 0.92255 0.91180 0.90467 0.93127 0.91098 0.94470 0.90156 0.74973 0.90132 0.86237 0.95422 0.90325 0.91747 0.94228 0.95371 0.92536 0.93154 0.91504 0.95540 0.92231 0.90834 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.84 71.98 0.64 -0.61 16 2 C -0.08 -0.98 2.49 -10.80 -0.03 -1.01 16 3 H 0.06 0.84 8.14 -2.38 -0.02 0.83 16 4 C -0.11 -1.20 4.93 30.59 0.15 -1.05 16 5 C -0.12 -1.73 5.92 30.60 0.18 -1.55 16 6 C -0.12 -2.25 5.22 30.59 0.16 -2.09 16 7 C 0.15 2.88 2.15 44.99 0.10 2.97 16 8 H 0.05 1.41 7.58 -2.38 -0.02 1.39 16 9 N -0.71 -13.87 5.00 -442.53 -2.21 -16.09 16 10 C 0.51 14.66 7.47 87.66 0.65 15.32 16 11 O -0.56 -21.54 13.99 -3.03 -0.04 -21.58 16 12 C 0.04 0.98 5.45 85.56 0.47 1.44 16 13 N -0.54 -20.98 4.40 -900.96 -3.96 -24.94 16 14 C 0.07 2.72 5.10 86.33 0.44 3.16 16 15 C -0.11 -4.76 6.09 30.65 0.19 -4.57 16 16 C -0.10 -5.17 5.03 30.68 0.15 -5.02 16 17 C 0.05 2.71 2.26 -11.49 -0.03 2.68 16 18 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 19 C -0.53 -29.93 8.56 25.60 0.22 -29.71 16 20 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 21 C 0.01 0.54 5.30 84.65 0.45 0.98 16 22 N -0.92 -55.16 11.37 21.45 0.24 -54.91 16 23 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 27 C 0.08 3.55 4.68 86.32 0.40 3.96 16 28 C -0.09 -1.07 2.41 -10.79 -0.03 -1.10 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 C -0.15 -1.32 7.98 71.98 0.57 -0.75 16 31 H 0.07 0.47 6.43 -2.39 -0.02 0.46 16 32 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.08 0.69 6.43 -2.39 -0.02 0.68 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 1.19 6.43 -2.39 -0.02 1.18 16 40 H 0.41 5.30 6.86 -92.71 -0.64 4.67 16 41 H 0.08 1.85 8.12 -2.39 -0.02 1.83 16 42 H 0.12 2.80 7.99 -2.39 -0.02 2.78 16 43 H 0.03 1.00 8.14 -2.39 -0.02 0.99 16 44 H 0.08 3.06 5.78 -2.38 -0.01 3.05 16 45 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 46 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.06 3.24 6.17 -2.39 -0.01 3.23 16 49 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 50 H 0.07 2.71 8.02 -2.39 -0.02 2.69 16 51 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 52 H 0.06 0.44 6.50 -2.39 -0.02 0.43 16 53 H 0.07 0.50 6.43 -2.38 -0.02 0.48 16 54 H 0.07 0.58 4.81 -2.39 -0.01 0.57 16 Total: -1.00 -70.30 393.08 0.98 -69.32 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.23 Total: 18.90 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: 4.70 Total: -16.95 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -5.93 Total: -95.94 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.04 Total: -21.58 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -70.30 0.98 -69.32 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595609019.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.446 kcal (2) G-P(sol) polarization free energy of solvation -70.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds