Wall clock time and date at job start Tue Mar 31 2020 15:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47448 * 2 1 4 4 C 1.53005 * 109.47019 * 240.00136 * 2 1 3 5 5 C 1.52998 * 109.47340 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47164 * 59.99924 * 5 4 2 7 7 C 1.53008 * 109.47363 * 300.00049 * 6 5 4 8 8 H 1.09001 * 109.46796 * 300.00526 * 7 6 5 9 9 N 1.46497 * 109.47335 * 179.97438 * 7 6 5 10 10 C 1.34777 * 119.99525 * 84.99977 * 9 7 6 11 11 O 1.21283 * 120.00463 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99675 * 179.72583 * 10 9 7 13 13 N 1.46904 * 109.47192 * 180.28082 * 12 10 9 14 14 C 1.46842 * 111.00247 * 66.04251 * 13 12 10 15 15 C 1.53034 * 109.52377 * 174.16246 * 14 13 12 16 16 C 1.53121 * 109.27762 * 59.17993 * 15 14 13 17 17 C 1.53113 * 109.16231 * 302.34546 * 16 15 14 18 18 H 1.09003 * 109.50679 * 297.71568 * 17 16 15 19 19 C 1.50695 * 109.50562 * 177.59498 * 17 16 15 20 20 H 1.08002 * 120.00421 * 240.00372 * 19 17 16 21 21 C 1.37881 * 119.99959 * 59.99806 * 19 17 16 22 22 N 1.31510 * 119.99667 * 0.02562 * 21 19 17 23 23 Si 1.86799 * 119.99918 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.47215 * 90.00210 * 23 21 19 25 25 H 1.48504 * 109.47362 * 210.00089 * 23 21 19 26 26 H 1.48502 * 109.47232 * 330.00318 * 23 21 19 27 27 C 1.46846 * 110.99644 * 301.83227 * 13 12 10 28 28 C 1.52998 * 109.47372 * 120.00586 * 2 1 3 29 29 H 1.09002 * 109.47313 * 59.99331 * 28 2 1 30 30 C 1.53005 * 109.46681 * 299.99757 * 28 2 1 31 31 H 1.09006 * 109.46991 * 299.99471 * 1 2 3 32 32 H 1.08998 * 109.47549 * 59.99784 * 1 2 3 33 33 H 1.09002 * 109.47448 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47191 * 300.00181 * 4 2 1 35 35 H 1.09003 * 109.46937 * 60.00155 * 4 2 1 36 36 H 1.08994 * 109.47717 * 180.02562 * 5 4 2 37 37 H 1.09008 * 109.46859 * 300.00217 * 5 4 2 38 38 H 1.08998 * 109.47238 * 180.02562 * 6 5 4 39 39 H 1.08994 * 109.46965 * 60.00198 * 6 5 4 40 40 H 0.97000 * 120.00580 * 265.00723 * 9 7 6 41 41 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 42 42 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 43 43 H 1.09006 * 109.46125 * 294.18045 * 14 13 12 44 44 H 1.09001 * 109.46569 * 54.15524 * 14 13 12 45 45 H 1.09003 * 109.50197 * 179.11896 * 15 14 13 46 46 H 1.08998 * 109.50698 * 299.20226 * 15 14 13 47 47 H 1.09004 * 109.51977 * 62.25171 * 16 15 14 48 48 H 1.09003 * 109.52146 * 182.37164 * 16 15 14 49 49 H 0.97005 * 119.99473 * 179.97438 * 22 21 19 50 50 H 1.09001 * 109.46535 * 305.86057 * 27 13 12 51 51 H 1.09008 * 109.46420 * 65.82466 * 27 13 12 52 52 H 1.08994 * 109.47191 * 299.99845 * 30 28 2 53 53 H 1.08998 * 109.47131 * 59.99932 * 30 28 2 54 54 H 1.09003 * 109.46937 * 179.97438 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5699 -0.7219 -1.2491 6 6 4.0794 -1.4435 0.0001 7 6 3.5695 -0.7223 1.2495 8 1 3.9332 0.3053 1.2497 9 7 4.0569 -1.4136 2.4456 10 6 5.2789 -1.1288 2.9376 11 8 5.9749 -0.2998 2.3904 12 6 5.7778 -1.8354 4.1716 13 7 7.1225 -1.3473 4.5055 14 6 7.0858 0.0658 4.9029 15 6 8.4735 0.4988 5.3813 16 6 9.4850 0.2935 4.2502 17 6 9.4687 -1.1765 3.8221 18 1 9.7756 -1.8030 4.6596 19 6 10.4187 -1.3754 2.6693 20 1 10.0501 -1.7426 1.7229 21 6 11.7586 -1.0885 2.8228 22 7 12.2075 -0.6418 3.9754 23 14 12.9363 -1.3358 1.3941 24 1 13.0150 -0.0862 0.5955 25 1 14.2843 -1.6749 1.9168 26 1 12.4459 -2.4427 0.5342 27 6 8.0521 -1.5609 3.3889 28 6 2.0400 -0.7214 1.2491 29 1 1.6766 -1.7490 1.2491 30 6 1.5300 -0.0001 2.4984 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.6766 -1.7488 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.9333 -1.2352 -2.1392 37 1 3.9336 0.3058 -1.2488 38 1 5.1694 -1.4435 0.0005 39 1 3.7157 -2.4710 -0.0001 40 1 3.5002 -2.0764 2.8835 41 1 5.1019 -1.6355 5.0031 42 1 5.8168 -2.9086 3.9850 43 1 6.7893 0.6756 4.0494 44 1 6.3659 0.1974 5.7107 45 1 8.4497 1.5519 5.6615 46 1 8.7646 -0.1008 6.2438 47 1 9.2157 0.9229 3.4021 48 1 10.4821 0.5609 4.6002 49 1 13.1502 -0.4403 4.0835 50 1 8.0339 -2.6110 3.0970 51 1 7.7511 -0.9436 2.5425 52 1 1.8933 1.0275 2.4985 53 1 0.4400 -0.0001 2.4985 54 1 1.8930 -0.5143 3.3884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595609020.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:53 Heat of formation + Delta-G solvation = -83.552663 kcal Electronic energy + Delta-G solvation = -29141.866109 eV Core-core repulsion = 25497.107500 eV Total energy + Delta-G solvation = -3644.758609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.55964 -40.20170 -38.63968 -35.61717 -35.32948 -34.02258 -33.52487 -31.71446 -31.61604 -28.62646 -27.57812 -26.92833 -26.36692 -24.04617 -23.17422 -22.45460 -22.06248 -21.46277 -20.67685 -20.30853 -18.46197 -17.99842 -17.27086 -16.71283 -16.30059 -16.05970 -15.73576 -15.56885 -15.55701 -15.47966 -15.02254 -14.90392 -14.82984 -14.25303 -13.97200 -13.82796 -13.66236 -13.37569 -13.23912 -13.00782 -12.91815 -12.80934 -12.75679 -12.61644 -12.53516 -12.46518 -12.25155 -12.01727 -11.80563 -11.77379 -11.68113 -11.45918 -11.39366 -11.32456 -11.09648 -11.00003 -10.86980 -10.66867 -10.38254 -9.92391 -8.93566 -8.08724 -6.22309 1.37440 1.38598 1.49098 1.68711 2.27236 2.41419 3.11509 3.17313 3.60059 3.72990 3.82985 3.99965 4.06367 4.14644 4.18228 4.24582 4.36486 4.42127 4.43548 4.48615 4.49894 4.55868 4.59949 4.68344 4.72485 4.78361 4.80008 4.84398 4.94845 4.96795 4.98624 5.07271 5.08209 5.09498 5.15362 5.17412 5.19716 5.23709 5.27426 5.34682 5.35457 5.41735 5.51501 5.52698 5.57553 5.62237 5.68037 5.95733 6.10667 6.19344 6.24440 6.46948 6.66952 6.89321 7.38867 7.44645 8.96167 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.016927 B = 0.003076 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.739499 B = 9099.555762 C =10259.031973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 H 0.057 0.943 4 C -0.109 4.109 5 C -0.117 4.117 6 C -0.126 4.126 7 C 0.153 3.847 8 H 0.051 0.949 9 N -0.711 5.711 10 C 0.476 3.524 11 O -0.573 6.573 12 C 0.034 3.966 13 N -0.521 5.521 14 C 0.059 3.941 15 C -0.109 4.109 16 C -0.100 4.100 17 C 0.056 3.944 18 H -0.003 1.003 19 C -0.535 4.535 20 H 0.043 0.957 21 C 0.013 3.987 22 N -0.915 5.915 23 Si 0.954 3.046 24 H -0.278 1.278 25 H -0.277 1.277 26 H -0.269 1.269 27 C 0.068 3.932 28 C -0.081 4.081 29 H 0.092 0.908 30 C -0.147 4.147 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.047 0.953 38 H 0.028 0.972 39 H 0.077 0.923 40 H 0.414 0.586 41 H 0.135 0.865 42 H 0.119 0.881 43 H 0.032 0.968 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.056 0.944 47 H 0.009 0.991 48 H 0.057 0.943 49 H 0.261 0.739 50 H 0.045 0.955 51 H 0.042 0.958 52 H 0.038 0.962 53 H 0.076 0.924 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.340 -1.913 -4.137 28.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 H 0.076 0.924 4 C -0.146 4.146 5 C -0.155 4.155 6 C -0.164 4.164 7 C 0.048 3.952 8 H 0.069 0.931 9 N -0.364 5.364 10 C 0.262 3.738 11 O -0.452 6.452 12 C -0.097 4.097 13 N -0.243 5.243 14 C -0.069 4.069 15 C -0.147 4.147 16 C -0.139 4.139 17 C 0.037 3.963 18 H 0.015 0.985 19 C -0.574 4.574 20 H 0.061 0.939 21 C -0.185 4.185 22 N -0.554 5.554 23 Si 0.779 3.221 24 H -0.204 1.204 25 H -0.202 1.202 26 H -0.194 1.194 27 C -0.060 4.060 28 C -0.100 4.100 29 H 0.110 0.890 30 C -0.204 4.204 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.095 0.905 40 H 0.252 0.748 41 H 0.153 0.847 42 H 0.137 0.863 43 H 0.050 0.950 44 H 0.107 0.893 45 H 0.083 0.917 46 H 0.074 0.926 47 H 0.028 0.972 48 H 0.076 0.924 49 H 0.070 0.930 50 H 0.063 0.937 51 H 0.060 0.940 52 H 0.057 0.943 53 H 0.095 0.905 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -27.501 -1.548 -4.005 27.834 hybrid contribution 0.997 0.312 -1.338 1.697 sum -26.504 -1.237 -5.343 27.066 Atomic orbital electron populations 1.21838 0.93436 1.02551 1.02219 1.21118 0.96740 0.98871 0.93628 0.92420 1.21596 0.93645 1.01493 0.97874 1.21483 0.97077 0.99956 0.96999 1.21864 0.99098 1.00382 0.95103 1.20902 0.94743 0.95516 0.84067 0.93084 1.46129 1.17211 1.43556 1.29527 1.22657 0.81494 0.82611 0.87008 1.90689 1.56285 1.35894 1.62339 1.22572 0.91205 1.01202 0.94728 1.62357 1.06206 1.19094 1.36623 1.22104 0.97302 0.88220 0.99227 1.21563 0.94967 0.99914 0.98251 1.21412 0.98754 0.98181 0.95529 1.18546 0.90650 0.92716 0.94390 0.98501 1.21491 0.93697 1.43862 0.98316 0.93880 1.25725 0.99735 0.94874 0.98208 1.70035 1.14775 1.45647 1.24989 0.85628 0.78353 0.78479 0.79627 1.20399 1.20248 1.19356 1.22180 0.92958 0.98583 0.92241 1.21351 0.91309 1.01409 0.95913 0.88959 1.21875 1.01922 0.99704 0.96870 0.91929 0.92333 0.91754 0.90733 0.91041 0.91461 0.93401 0.95279 0.90486 0.74832 0.84733 0.86290 0.95006 0.89293 0.91730 0.92571 0.97229 0.92405 0.93007 0.93671 0.93979 0.94253 0.90535 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.84 71.98 0.64 -0.67 16 2 C -0.08 -1.09 2.25 -10.79 -0.02 -1.11 16 3 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.11 -1.43 5.20 30.60 0.16 -1.27 16 5 C -0.12 -2.19 5.92 30.59 0.18 -2.01 16 6 C -0.13 -2.77 5.49 30.60 0.17 -2.60 16 7 C 0.15 3.17 1.90 44.98 0.09 3.25 16 8 H 0.05 1.44 7.58 -2.39 -0.02 1.42 16 9 N -0.71 -14.18 4.38 -442.60 -1.94 -16.12 16 10 C 0.48 13.82 7.21 87.66 0.63 14.45 16 11 O -0.57 -23.23 11.29 -3.04 -0.03 -23.26 16 12 C 0.03 0.90 5.86 85.56 0.50 1.40 16 13 N -0.52 -19.59 4.86 -900.90 -4.38 -23.97 16 14 C 0.06 2.21 5.09 86.33 0.44 2.65 16 15 C -0.11 -4.63 6.09 30.65 0.19 -4.44 16 16 C -0.10 -5.36 5.02 30.67 0.15 -5.21 16 17 C 0.06 3.10 2.26 -11.49 -0.03 3.08 16 18 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 19 C -0.54 -32.32 8.56 25.60 0.22 -32.10 16 20 H 0.04 2.60 7.74 -2.91 -0.02 2.58 16 21 C 0.01 0.78 5.30 84.66 0.45 1.22 16 22 N -0.91 -55.97 11.35 21.45 0.24 -55.73 16 23 Si 0.95 46.47 29.54 68.60 2.03 48.50 16 24 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 25 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 26 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 27 C 0.07 3.20 4.20 86.33 0.36 3.56 16 28 C -0.08 -1.07 1.82 -10.81 -0.02 -1.09 16 29 H 0.09 0.94 8.14 -2.39 -0.02 0.93 16 30 C -0.15 -1.82 8.68 71.98 0.63 -1.19 16 31 H 0.06 0.54 6.43 -2.38 -0.02 0.52 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.05 1.03 8.14 -2.38 -0.02 1.02 16 38 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.41 5.09 8.39 -92.71 -0.78 4.31 16 41 H 0.13 2.46 8.06 -2.38 -0.02 2.44 16 42 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.03 1.33 6.00 -2.38 -0.01 1.32 16 44 H 0.09 2.65 8.06 -2.39 -0.02 2.63 16 45 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 47 H 0.01 0.50 8.14 -2.39 -0.02 0.49 16 48 H 0.06 3.40 6.15 -2.39 -0.01 3.39 16 49 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 50 H 0.04 2.10 8.12 -2.39 -0.02 2.08 16 51 H 0.04 2.19 5.36 -2.38 -0.01 2.18 16 52 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 53 H 0.08 0.70 6.43 -2.39 -0.02 0.69 16 54 H 0.06 0.70 7.44 -2.39 -0.02 0.69 16 Total: -1.00 -74.61 396.81 0.72 -73.89 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.07 Total: 18.78 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: 4.73 Total: -22.09 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -6.07 Total: -95.82 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.03 Total: -23.26 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -74.61 0.72 -73.89 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595609020.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.663 kcal (2) G-P(sol) polarization free energy of solvation -74.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds