Wall clock time and date at job start Tue Mar 31 2020 15:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46666 * 2 1 4 4 C 1.52998 * 109.47271 * 240.00246 * 2 1 3 5 5 C 1.52997 * 109.46994 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47234 * 60.00233 * 5 4 2 7 7 C 1.53002 * 109.46866 * 299.99453 * 6 5 4 8 8 H 1.08994 * 109.47322 * 300.00392 * 7 6 5 9 9 N 1.46503 * 109.47344 * 180.02562 * 7 6 5 10 10 C 1.34771 * 120.00073 * 85.00153 * 9 7 6 11 11 O 1.21286 * 119.99882 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00127 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47398 * 179.97438 * 12 10 9 14 14 C 1.46851 * 111.00181 * 293.96072 * 13 12 10 15 15 C 1.53034 * 109.52526 * 185.83922 * 14 13 12 16 16 C 1.53119 * 109.27499 * 300.81793 * 15 14 13 17 17 C 1.53115 * 109.16400 * 57.65252 * 16 15 14 18 18 H 1.09004 * 109.50128 * 62.32794 * 17 16 15 19 19 C 1.50702 * 109.50335 * 182.40669 * 17 16 15 20 20 H 1.08002 * 120.00299 * 120.00563 * 19 17 16 21 21 C 1.37884 * 119.99942 * 299.72121 * 19 17 16 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 17 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 17 24 24 H 1.48496 * 109.47341 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46983 * 120.00379 * 23 21 19 26 26 H 1.48503 * 109.47491 * 240.00192 * 23 21 19 27 27 C 1.46852 * 110.99634 * 58.16389 * 13 12 10 28 28 C 1.52990 * 109.47418 * 119.99684 * 2 1 3 29 29 H 1.09004 * 109.46944 * 60.00486 * 28 2 1 30 30 C 1.52998 * 109.47359 * 300.00509 * 28 2 1 31 31 H 1.09004 * 109.46666 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47149 * 299.99987 * 1 2 3 33 33 H 1.09000 * 109.47509 * 60.00166 * 1 2 3 34 34 H 1.09000 * 109.47191 * 59.99393 * 4 2 1 35 35 H 1.08994 * 109.47002 * 299.99355 * 4 2 1 36 36 H 1.09002 * 109.47682 * 300.00001 * 5 4 2 37 37 H 1.09006 * 109.47277 * 179.97438 * 5 4 2 38 38 H 1.08999 * 109.47336 * 180.02562 * 6 5 4 39 39 H 1.08994 * 109.47470 * 59.99755 * 6 5 4 40 40 H 0.97002 * 119.99619 * 265.00192 * 9 7 6 41 41 H 1.08999 * 109.46877 * 60.00413 * 12 10 9 42 42 H 1.08993 * 109.47403 * 300.00325 * 12 10 9 43 43 H 1.08996 * 109.46169 * 65.81598 * 14 13 12 44 44 H 1.09001 * 109.45097 * 305.84403 * 14 13 12 45 45 H 1.08992 * 109.50636 * 180.87870 * 15 14 13 46 46 H 1.08996 * 109.53978 * 60.77336 * 15 14 13 47 47 H 1.09005 * 109.52220 * 297.74832 * 16 15 14 48 48 H 1.09001 * 109.57794 * 177.59448 * 16 15 14 49 49 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 50 50 H 1.08996 * 109.46272 * 54.14925 * 27 13 12 51 51 H 1.09004 * 109.46111 * 294.17608 * 27 13 12 52 52 H 1.09004 * 109.47074 * 299.99898 * 30 28 2 53 53 H 1.08997 * 109.47441 * 59.99896 * 30 28 2 54 54 H 1.09008 * 109.47507 * 179.97438 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7206 -1.2495 6 6 4.0805 -1.4415 -0.0003 7 6 3.5705 -0.7203 1.2489 8 1 3.9334 0.3075 1.2487 9 7 4.0598 -1.4102 2.4452 10 6 5.2817 -1.1234 2.9361 11 8 5.9765 -0.2944 2.3873 12 6 5.7853 -1.8334 4.1662 13 7 7.1319 -1.3475 4.4954 14 6 8.0967 -1.7249 3.4546 15 6 9.5075 -1.3316 3.8981 16 6 9.5577 0.1790 4.1432 17 6 8.5103 0.5525 5.1958 18 1 8.7472 0.0561 6.1369 19 6 8.5124 2.0456 5.4000 20 1 7.6166 2.6180 5.2092 21 6 9.6562 2.6802 5.8360 22 7 10.7470 1.9832 6.0683 23 14 9.6565 4.5299 6.0964 24 1 8.3155 5.0764 5.7675 25 1 9.9786 4.8301 7.5147 26 1 10.6756 5.1539 5.2147 27 6 7.1283 0.1046 4.7147 28 6 2.0400 -0.7211 1.2492 29 1 1.6768 -1.7488 1.2492 30 6 1.5300 0.0001 2.4984 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 1.6766 -0.2074 -2.1392 35 1 1.6768 -1.7488 -1.2492 36 1 3.9330 0.3072 -1.2497 37 1 3.9334 -1.2348 -2.1393 38 1 5.1705 -1.4407 -0.0003 39 1 3.7176 -2.4693 -0.0001 40 1 3.5043 -2.0734 2.8838 41 1 5.8228 -2.9062 3.9766 42 1 5.1130 -1.6353 5.0009 43 1 7.8504 -1.2086 2.5268 44 1 8.0538 -2.8020 3.2932 45 1 10.2215 -1.5977 3.1187 46 1 9.7604 -1.8581 4.8184 47 1 9.3437 0.7062 3.2134 48 1 10.5489 0.4584 4.5004 49 1 11.5518 2.4297 6.3747 50 1 6.3822 0.3562 5.4684 51 1 6.8867 0.6123 3.7808 52 1 1.8933 1.0278 2.4984 53 1 0.4400 0.0000 2.4985 54 1 1.8930 -0.5140 3.3885 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595609021.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:57 Heat of formation + Delta-G solvation = -83.649027 kcal Electronic energy + Delta-G solvation = -29139.462896 eV Core-core repulsion = 25494.700108 eV Total energy + Delta-G solvation = -3644.762788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.55686 -40.19829 -38.63867 -35.61550 -35.32783 -34.02051 -33.52498 -31.71416 -31.61749 -28.63166 -27.58022 -26.92658 -26.37656 -24.04080 -23.18642 -22.45049 -22.05545 -21.45457 -20.67813 -20.31195 -18.46222 -17.99838 -17.26311 -16.75068 -16.24518 -16.07162 -15.73008 -15.57372 -15.55582 -15.48471 -15.00568 -14.94573 -14.81426 -14.27961 -13.93630 -13.82872 -13.66528 -13.40177 -13.22018 -13.01575 -12.92668 -12.80432 -12.75987 -12.63171 -12.54584 -12.45797 -12.24010 -12.02497 -11.79982 -11.77703 -11.62443 -11.49500 -11.38338 -11.36512 -11.08481 -11.00066 -10.86734 -10.66175 -10.38515 -9.92067 -8.93319 -8.08868 -6.22394 1.37105 1.38003 1.50412 1.68901 2.27225 2.41470 3.11535 3.17202 3.60051 3.72888 3.82678 3.99897 4.06763 4.16053 4.17842 4.24799 4.36407 4.42525 4.44062 4.49768 4.49992 4.55212 4.59953 4.66989 4.71672 4.78427 4.80020 4.84304 4.94918 4.96555 4.97577 5.06004 5.08132 5.10077 5.14607 5.17361 5.19764 5.23877 5.27674 5.34986 5.35774 5.41847 5.51108 5.51589 5.57448 5.62375 5.68046 5.95722 6.10687 6.19370 6.24418 6.47014 6.67082 6.89444 7.39036 7.44658 8.96201 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.015713 B = 0.003052 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.479993 B = 9173.009015 C = 9939.204584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 H 0.053 0.947 4 C -0.108 4.108 5 C -0.117 4.117 6 C -0.122 4.122 7 C 0.150 3.850 8 H 0.045 0.955 9 N -0.711 5.711 10 C 0.476 3.524 11 O -0.573 6.573 12 C 0.034 3.966 13 N -0.521 5.521 14 C 0.059 3.941 15 C -0.109 4.109 16 C -0.101 4.101 17 C 0.056 3.944 18 H -0.003 1.003 19 C -0.535 4.535 20 H 0.043 0.957 21 C 0.013 3.987 22 N -0.915 5.915 23 Si 0.954 3.046 24 H -0.271 1.271 25 H -0.274 1.274 26 H -0.279 1.279 27 C 0.068 3.932 28 C -0.080 4.080 29 H 0.096 0.904 30 C -0.149 4.149 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.081 0.919 40 H 0.414 0.586 41 H 0.135 0.865 42 H 0.120 0.880 43 H 0.032 0.968 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.009 0.991 48 H 0.057 0.943 49 H 0.261 0.739 50 H 0.045 0.955 51 H 0.042 0.958 52 H 0.033 0.967 53 H 0.076 0.924 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.490 -12.432 -12.507 28.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 H 0.072 0.928 4 C -0.146 4.146 5 C -0.156 4.156 6 C -0.160 4.160 7 C 0.045 3.955 8 H 0.064 0.936 9 N -0.364 5.364 10 C 0.262 3.738 11 O -0.452 6.452 12 C -0.097 4.097 13 N -0.243 5.243 14 C -0.068 4.068 15 C -0.147 4.147 16 C -0.139 4.139 17 C 0.037 3.963 18 H 0.015 0.985 19 C -0.573 4.573 20 H 0.061 0.939 21 C -0.186 4.186 22 N -0.554 5.554 23 Si 0.780 3.220 24 H -0.196 1.196 25 H -0.200 1.200 26 H -0.205 1.205 27 C -0.060 4.060 28 C -0.099 4.099 29 H 0.114 0.886 30 C -0.206 4.206 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.099 0.901 40 H 0.252 0.748 41 H 0.152 0.848 42 H 0.137 0.863 43 H 0.050 0.950 44 H 0.107 0.893 45 H 0.083 0.917 46 H 0.074 0.926 47 H 0.028 0.972 48 H 0.076 0.924 49 H 0.070 0.930 50 H 0.064 0.936 51 H 0.060 0.940 52 H 0.053 0.947 53 H 0.095 0.905 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.659 -12.052 -12.370 27.702 hybrid contribution 0.265 1.621 -0.272 1.665 sum -21.394 -10.431 -12.642 26.951 Atomic orbital electron populations 1.21840 0.93522 1.02621 1.02095 1.21125 0.96721 0.98786 0.93862 0.92824 1.21589 0.93900 1.01528 0.97549 1.21494 0.96892 0.99938 0.97242 1.21832 0.99350 1.00368 0.94469 1.20940 0.94613 0.95484 0.84430 0.93641 1.46124 1.17317 1.43460 1.29512 1.22655 0.81705 0.82638 0.86776 1.90690 1.57146 1.35502 1.61892 1.22567 0.91238 1.01576 0.94319 1.62364 1.05034 1.14352 1.42525 1.22101 0.91914 0.99979 0.92846 1.21558 0.96216 0.96449 1.00452 1.21412 1.01793 0.93847 0.96831 1.18551 0.90940 0.93570 0.93260 0.98485 1.21524 0.97031 0.94138 1.44625 0.93885 1.25730 0.95227 1.02528 0.95087 1.70044 1.01994 1.36715 1.46692 0.85566 0.78010 0.80484 0.77958 1.19581 1.19981 1.20517 1.22182 0.98239 0.86616 0.98944 1.21366 0.91527 1.01435 0.95594 0.88566 1.21891 1.01951 0.99581 0.97168 0.91521 0.92262 0.92314 0.91120 0.90438 0.93674 0.90970 0.94670 0.90062 0.74830 0.84774 0.86253 0.94996 0.89328 0.91738 0.92579 0.97209 0.92415 0.93016 0.93634 0.93991 0.94740 0.90504 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.84 71.98 0.64 -0.79 16 2 C -0.09 -1.16 2.25 -10.80 -0.02 -1.18 16 3 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.11 -1.35 5.20 30.59 0.16 -1.19 16 5 C -0.12 -2.01 5.92 30.59 0.18 -1.83 16 6 C -0.12 -2.40 5.49 30.59 0.17 -2.23 16 7 C 0.15 3.12 1.90 45.01 0.09 3.21 16 8 H 0.05 1.34 7.58 -2.39 -0.02 1.32 16 9 N -0.71 -14.19 4.39 -442.46 -1.94 -16.13 16 10 C 0.48 13.83 7.21 87.66 0.63 14.46 16 11 O -0.57 -23.26 11.29 -3.05 -0.03 -23.29 16 12 C 0.03 0.90 5.86 85.56 0.50 1.40 16 13 N -0.52 -19.59 4.86 -900.93 -4.38 -23.97 16 14 C 0.06 2.21 5.09 86.32 0.44 2.65 16 15 C -0.11 -4.62 6.09 30.65 0.19 -4.43 16 16 C -0.10 -5.37 5.03 30.67 0.15 -5.21 16 17 C 0.06 3.09 2.26 -11.49 -0.03 3.07 16 18 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 19 C -0.53 -32.30 8.56 25.60 0.22 -32.08 16 20 H 0.04 2.60 7.74 -2.91 -0.02 2.58 16 21 C 0.01 0.76 5.31 84.66 0.45 1.20 16 22 N -0.91 -55.92 11.36 21.45 0.24 -55.67 16 23 Si 0.95 46.48 29.54 68.60 2.03 48.51 16 24 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 26 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 27 C 0.07 3.19 4.20 86.32 0.36 3.55 16 28 C -0.08 -1.12 1.83 -10.78 -0.02 -1.14 16 29 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 30 C -0.15 -2.21 8.68 71.98 0.62 -1.58 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.60 6.43 -2.39 -0.02 0.58 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.04 0.93 8.14 -2.39 -0.02 0.92 16 37 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.41 5.09 8.39 -92.71 -0.78 4.31 16 41 H 0.13 2.47 8.06 -2.39 -0.02 2.45 16 42 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.03 1.34 6.00 -2.39 -0.01 1.32 16 44 H 0.09 2.64 8.06 -2.39 -0.02 2.62 16 45 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 47 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 48 H 0.06 3.39 6.16 -2.39 -0.01 3.38 16 49 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 50 H 0.05 2.11 8.12 -2.39 -0.02 2.09 16 51 H 0.04 2.19 5.36 -2.39 -0.01 2.18 16 52 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 53 H 0.08 0.88 6.43 -2.39 -0.02 0.86 16 54 H 0.06 0.84 7.45 -2.38 -0.02 0.83 16 Total: -1.00 -74.69 396.84 0.72 -73.96 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.07 Total: 18.72 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: 4.73 Total: -22.12 kcal Atomic # 7 Polarization: -89.70 SS G_CDS: -6.07 Total: -95.78 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.03 Total: -23.29 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -74.69 0.72 -73.96 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595609021.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.684 kcal (2) G-P(sol) polarization free energy of solvation -74.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds