Wall clock time and date at job start Tue Mar 31 2020 15:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47054 * 2 1 4 4 C 1.50693 * 109.47484 * 239.99606 * 2 1 3 5 5 O 1.21286 * 120.00214 * 265.45532 * 4 2 1 6 6 N 1.34776 * 120.00382 * 85.45167 * 4 2 1 7 7 C 1.46921 * 120.63585 * 184.47816 * 6 4 2 8 8 H 1.08996 * 109.58855 * 113.65995 * 7 6 4 9 9 C 1.53002 * 109.58420 * 353.37300 * 7 6 4 10 10 C 1.53192 * 108.77669 * 233.58990 * 7 6 4 11 11 C 1.53045 * 109.31152 * 305.36441 * 10 7 6 12 12 C 1.53039 * 109.53852 * 61.36202 * 11 10 7 13 13 C 1.46927 * 120.62663 * 4.45588 * 6 4 2 14 14 H 1.09000 * 109.58624 * 6.48090 * 13 6 4 15 15 C 1.52997 * 109.58945 * 246.19795 * 13 6 4 16 16 N 1.46900 * 109.46932 * 119.99315 * 2 1 3 17 17 C 1.46841 * 110.99997 * 175.57605 * 16 2 1 18 18 C 1.53037 * 109.52463 * 185.84116 * 17 16 2 19 19 C 1.53121 * 109.28161 * 300.82286 * 18 17 16 20 20 C 1.53118 * 109.15950 * 57.64952 * 19 18 17 21 21 H 1.08999 * 109.50117 * 62.28866 * 20 19 18 22 22 C 1.50692 * 109.50354 * 182.40728 * 20 19 18 23 23 H 1.08007 * 120.00230 * 119.80615 * 22 20 19 24 24 C 1.37877 * 120.00152 * 299.80350 * 22 20 19 25 25 N 1.31510 * 120.00016 * 0.02562 * 24 22 20 26 26 Si 1.86804 * 120.00257 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46714 * 60.00217 * 26 24 22 28 28 H 1.48491 * 109.47250 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47200 * 300.00563 * 26 24 22 30 30 C 1.46843 * 111.00307 * 299.79015 * 16 2 1 31 31 H 1.09009 * 109.47033 * 66.00792 * 1 2 3 32 32 H 1.09001 * 109.47593 * 186.00417 * 1 2 3 33 33 H 1.09001 * 109.47656 * 306.01279 * 1 2 3 34 34 H 1.09001 * 109.47171 * 64.53928 * 9 7 6 35 35 H 1.09004 * 109.47039 * 184.53569 * 9 7 6 36 36 H 1.09000 * 109.47570 * 304.53706 * 9 7 6 37 37 H 1.09007 * 109.50174 * 65.30999 * 10 7 6 38 38 H 1.08994 * 109.49973 * 185.40948 * 10 7 6 39 39 H 1.09000 * 109.45745 * 301.34487 * 11 10 7 40 40 H 1.08997 * 109.45975 * 181.38864 * 11 10 7 41 41 H 1.08996 * 109.49590 * 178.68585 * 12 11 10 42 42 H 1.08998 * 109.49730 * 58.59048 * 12 11 10 43 43 H 1.09002 * 109.47017 * 59.99762 * 15 13 6 44 44 H 1.08996 * 109.47421 * 179.97438 * 15 13 6 45 45 H 1.09005 * 109.46991 * 300.00365 * 15 13 6 46 46 H 1.08994 * 109.46633 * 305.85749 * 17 16 2 47 47 H 1.08998 * 109.46319 * 65.82762 * 17 16 2 48 48 H 1.09007 * 109.50537 * 180.87905 * 18 17 16 49 49 H 1.09003 * 109.53675 * 60.78524 * 18 17 16 50 50 H 1.09002 * 109.51950 * 297.74874 * 19 18 17 51 51 H 1.08990 * 109.52523 * 177.56049 * 19 18 17 52 52 H 0.97004 * 120.00540 * 179.97438 * 25 24 22 53 53 H 1.09003 * 109.46128 * 294.17558 * 30 16 2 54 54 H 1.09003 * 109.46233 * 54.14995 * 30 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 8 2.3130 -1.8892 -1.1779 6 7 2.1698 -0.0361 -2.3891 7 6 2.5644 -0.7349 -3.6198 8 1 1.7406 -0.7120 -4.3331 9 6 2.9202 -2.1867 -3.2935 10 6 3.7853 -0.0289 -4.2179 11 6 3.4668 1.4554 -4.4124 12 6 3.1554 2.0940 -3.0570 13 6 1.9274 1.4120 -2.4457 14 1 1.7581 1.7937 -1.4389 15 6 0.6994 1.6930 -3.3140 16 7 2.0196 -0.6924 1.1995 17 6 3.4836 -0.8042 1.1818 18 6 3.9460 -1.6543 2.3674 19 6 3.4813 -0.9991 3.6710 20 6 1.9576 -0.8502 3.6433 21 1 1.4966 -1.8362 3.5846 22 6 1.4973 -0.1525 4.8972 23 1 0.9688 0.7869 4.8295 24 6 1.7509 -0.7135 6.1309 25 7 2.3949 -1.8572 6.2134 26 14 1.1810 0.1517 7.6853 27 1 -0.2962 0.3005 7.6557 28 1 1.5744 -0.6509 8.8711 29 1 1.8121 1.4936 7.7647 30 6 1.5529 -0.0235 2.4206 31 1 -0.3633 0.4179 -0.9390 32 1 -0.3634 -1.0220 0.1075 33 1 -0.3634 0.6042 0.8312 34 1 2.0327 -2.7059 -2.9318 35 1 3.2893 -2.6811 -4.1922 36 1 3.6922 -2.2076 -2.5243 37 1 4.6336 -0.1332 -3.5414 38 1 4.0297 -0.4777 -5.1806 39 1 2.6030 1.5583 -5.0693 40 1 4.3253 1.9553 -4.8608 41 1 2.9515 3.1560 -3.1934 42 1 4.0096 1.9696 -2.3914 43 1 -0.1707 1.1965 -2.8843 44 1 0.5210 2.7675 -3.3543 45 1 0.8727 1.3149 -4.3216 46 1 3.8007 -1.2755 0.2516 47 1 3.9247 0.1899 1.2538 48 1 5.0338 -1.7241 2.3629 49 1 3.5169 -2.6532 2.2891 50 1 3.9416 -0.0159 3.7688 51 1 3.7709 -1.6236 4.5160 52 1 2.5736 -2.2517 7.0814 53 1 2.0030 0.9670 2.4868 54 1 0.4675 0.0722 2.3901 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595609792.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:14 Heat of formation + Delta-G solvation = -45.094453 kcal Electronic energy + Delta-G solvation = -30079.876140 eV Core-core repulsion = 26436.785204 eV Total energy + Delta-G solvation = -3643.090936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.96326 -39.89626 -38.44625 -36.08332 -34.69329 -33.89184 -33.60571 -31.74300 -30.72698 -29.89660 -27.42288 -27.06611 -25.81198 -24.62913 -23.89488 -23.04672 -22.45290 -21.31816 -20.41224 -19.27925 -18.36749 -17.95958 -17.34920 -16.68434 -16.41621 -16.25507 -15.94146 -15.50723 -15.30355 -14.95496 -14.86118 -14.62787 -14.44185 -14.26299 -14.13580 -13.94936 -13.86642 -13.64439 -13.50900 -13.04732 -12.92592 -12.83473 -12.76639 -12.70045 -12.56454 -12.47876 -12.43166 -12.31444 -11.97841 -11.86954 -11.75232 -11.68135 -11.49923 -11.40696 -11.28006 -10.90421 -10.65524 -10.39213 -9.90682 -9.48552 -9.09861 -8.05823 -6.20854 1.43069 1.44932 1.52383 1.64672 1.91502 2.44550 2.99953 3.21118 3.45031 3.70185 3.88241 3.92269 4.03217 4.04653 4.10496 4.14023 4.22816 4.25632 4.37083 4.40978 4.44087 4.54015 4.56548 4.60523 4.69693 4.72354 4.73894 4.80557 4.84331 4.86266 4.97232 4.98518 5.02550 5.05289 5.08071 5.12641 5.13260 5.17855 5.23638 5.24379 5.32569 5.36015 5.42647 5.49884 5.56882 5.63853 5.77049 5.94417 6.10876 6.19282 6.20682 6.44646 6.50676 6.91946 7.31100 7.47219 8.99045 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.022646 B = 0.003219 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.143942 B = 8697.348550 C = 9145.622416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.061 3.939 3 H 0.069 0.931 4 C 0.520 3.480 5 O -0.548 6.548 6 N -0.601 5.601 7 C 0.142 3.858 8 H 0.085 0.915 9 C -0.128 4.128 10 C -0.127 4.127 11 C -0.116 4.116 12 C -0.128 4.128 13 C 0.120 3.880 14 H 0.091 0.909 15 C -0.159 4.159 16 N -0.533 5.533 17 C 0.071 3.929 18 C -0.107 4.107 19 C -0.100 4.100 20 C 0.054 3.946 21 H -0.009 1.009 22 C -0.534 4.534 23 H 0.057 0.943 24 C 0.012 3.988 25 N -0.918 5.918 26 Si 0.957 3.043 27 H -0.270 1.270 28 H -0.287 1.287 29 H -0.269 1.269 30 C 0.083 3.917 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.046 0.954 35 H 0.058 0.942 36 H 0.043 0.957 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.025 0.975 48 H 0.064 0.936 49 H 0.041 0.959 50 H 0.026 0.974 51 H 0.057 0.943 52 H 0.260 0.740 53 H 0.021 0.979 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.039 10.473 -24.862 26.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.050 4.050 3 H 0.087 0.913 4 C 0.308 3.692 5 O -0.425 6.425 6 N -0.336 5.336 7 C 0.040 3.960 8 H 0.103 0.897 9 C -0.185 4.185 10 C -0.165 4.165 11 C -0.153 4.153 12 C -0.166 4.166 13 C 0.018 3.982 14 H 0.109 0.891 15 C -0.217 4.217 16 N -0.259 5.259 17 C -0.056 4.056 18 C -0.145 4.145 19 C -0.139 4.139 20 C 0.035 3.965 21 H 0.010 0.990 22 C -0.573 4.573 23 H 0.076 0.924 24 C -0.187 4.187 25 N -0.557 5.557 26 Si 0.783 3.217 27 H -0.195 1.195 28 H -0.212 1.212 29 H -0.194 1.194 30 C -0.044 4.044 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.115 0.885 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.107 0.893 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.043 0.957 48 H 0.083 0.917 49 H 0.060 0.940 50 H 0.045 0.955 51 H 0.076 0.924 52 H 0.069 0.931 53 H 0.040 0.960 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.018 9.242 -24.724 26.395 hybrid contribution 0.266 0.587 1.468 1.603 sum 0.248 9.829 -23.256 25.249 Atomic orbital electron populations 1.21761 0.91023 1.02786 1.03493 1.21782 0.98289 0.95962 0.88959 0.91332 1.20564 0.77041 0.87031 0.84604 1.90755 1.49927 1.17277 1.84554 1.48341 1.67884 1.09273 1.08069 1.21359 0.97414 0.91819 0.85412 0.89721 1.22044 1.01866 0.94924 0.99701 1.21981 0.96487 0.96754 1.01301 1.21542 1.02780 0.94125 0.96842 1.21930 0.96603 1.00829 0.97263 1.21653 0.96624 0.78510 1.01431 0.89135 1.22174 0.95982 1.03364 1.00179 1.61713 1.10700 1.52223 1.01217 1.21955 0.87268 0.97664 0.98738 1.21525 0.99243 0.98642 0.95042 1.21452 0.98199 0.98060 0.96164 1.18567 0.92564 0.94044 0.91345 0.99042 1.21479 1.36610 1.07279 0.91918 0.92444 1.25774 0.95202 0.95520 1.02185 1.70056 1.41683 1.19010 1.24987 0.85630 0.78927 0.78558 0.78630 1.19476 1.21249 1.19437 1.22068 0.99281 0.94536 0.88489 0.89440 0.93076 0.90829 0.93483 0.92300 0.93798 0.93289 0.89263 0.90046 0.90563 0.88469 0.93057 0.92715 0.89348 0.91252 0.91137 0.95696 0.91712 0.94026 0.95470 0.92412 0.93141 0.96050 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 8.77 71.98 0.63 -2.91 16 2 C 0.06 1.86 1.75 44.17 0.08 1.94 16 3 H 0.07 1.85 6.03 -2.39 -0.01 1.83 16 4 C 0.52 15.60 5.76 87.65 0.51 16.11 16 5 O -0.55 -20.60 10.49 -3.05 -0.03 -20.63 16 6 N -0.60 -13.04 2.68 -771.35 -2.07 -15.11 16 7 C 0.14 2.72 3.08 44.98 0.14 2.86 16 8 H 0.08 1.36 7.50 -2.39 -0.02 1.34 16 9 C -0.13 -3.18 7.59 71.98 0.55 -2.63 16 10 C -0.13 -1.86 5.37 30.67 0.16 -1.70 16 11 C -0.12 -1.22 5.68 30.62 0.17 -1.05 16 12 C -0.13 -1.59 5.55 30.67 0.17 -1.42 16 13 C 0.12 1.84 3.09 44.97 0.14 1.98 16 14 H 0.09 1.48 5.36 -2.39 -0.01 1.47 16 15 C -0.16 -1.72 9.03 71.98 0.65 -1.07 16 16 N -0.53 -21.03 4.27 -875.55 -3.74 -24.77 16 17 C 0.07 2.80 5.08 86.33 0.44 3.24 16 18 C -0.11 -4.68 6.09 30.65 0.19 -4.49 16 19 C -0.10 -5.11 5.03 30.67 0.15 -4.96 16 20 C 0.05 2.84 2.26 -11.49 -0.03 2.82 16 21 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 22 C -0.53 -30.00 8.56 25.60 0.22 -29.78 16 23 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 24 C 0.01 0.67 5.30 84.66 0.45 1.12 16 25 N -0.92 -54.92 11.36 21.45 0.24 -54.68 16 26 Si 0.96 44.13 29.54 68.60 2.03 46.15 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 28 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 29 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 30 C 0.08 3.59 4.44 86.33 0.38 3.98 16 31 H 0.09 1.75 7.03 -2.38 -0.02 1.73 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 1.92 6.61 -2.39 -0.02 1.90 16 34 H 0.05 1.40 6.76 -2.39 -0.02 1.39 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.04 1.34 6.74 -2.39 -0.02 1.32 16 37 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.08 0.66 6.49 -2.39 -0.02 0.64 16 40 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.05 0.69 7.03 -2.39 -0.02 0.67 16 44 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.07 0.67 5.73 -2.38 -0.01 0.65 16 46 H 0.07 2.76 5.81 -2.39 -0.01 2.75 16 47 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 49 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 50 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 51 H 0.06 3.30 6.16 -2.39 -0.01 3.29 16 52 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 53 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 54 H 0.07 2.91 6.14 -2.39 -0.01 2.89 16 Total: -1.00 -68.75 385.53 2.29 -66.46 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.86 Total: 18.53 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 5.00 Total: -15.95 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: -5.56 Total: -94.56 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.03 Total: -20.63 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -68.75 2.29 -66.46 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595609792.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.363 kcal (2) G-P(sol) polarization free energy of solvation -68.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds