Wall clock time and date at job start Tue Mar 31 2020 15:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46951 * 2 1 4 4 C 1.50707 * 109.47067 * 240.00673 * 2 1 3 5 5 O 1.21274 * 119.99505 * 246.66517 * 4 2 1 6 6 N 1.34773 * 120.00158 * 66.67105 * 4 2 1 7 7 C 1.46930 * 120.63034 * 4.61733 * 6 4 2 8 8 H 1.08998 * 109.58834 * 6.62890 * 7 6 4 9 9 C 1.53004 * 109.58454 * 246.20709 * 7 6 4 10 10 C 1.53618 * 108.54282 * 126.37266 * 7 6 4 11 11 C 1.53045 * 109.24308 * 54.85299 * 10 7 6 12 12 C 1.53037 * 109.54057 * 298.51374 * 11 10 7 13 13 C 1.46924 * 120.62859 * 184.90136 * 6 4 2 14 14 H 1.09003 * 109.58240 * 113.65501 * 13 6 4 15 15 C 1.52995 * 109.58732 * 353.37087 * 13 6 4 16 16 N 1.46892 * 109.47211 * 120.00495 * 2 1 3 17 17 C 1.46841 * 111.00242 * 58.95472 * 16 2 1 18 18 C 1.53042 * 109.52712 * 174.16266 * 17 16 2 19 19 C 1.53116 * 109.27776 * 59.17721 * 18 17 16 20 20 C 1.53125 * 109.16236 * 302.34954 * 19 18 17 21 21 H 1.09003 * 109.49759 * 297.67162 * 20 19 18 22 22 C 1.50699 * 109.50112 * 177.59772 * 20 19 18 23 23 H 1.08000 * 119.99583 * 239.99873 * 22 20 19 24 24 C 1.37877 * 120.00367 * 59.99961 * 22 20 19 25 25 N 1.31506 * 119.99819 * 359.97438 * 24 22 20 26 26 Si 1.86801 * 119.99950 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47125 * 180.02562 * 26 24 22 28 28 H 1.48506 * 109.47010 * 299.99791 * 26 24 22 29 29 H 1.48495 * 109.47085 * 59.99915 * 26 24 22 30 30 C 1.46853 * 110.99730 * 294.74425 * 16 2 1 31 31 H 1.08996 * 109.46966 * 53.69633 * 1 2 3 32 32 H 1.08997 * 109.46825 * 173.69284 * 1 2 3 33 33 H 1.08995 * 109.46876 * 293.69829 * 1 2 3 34 34 H 1.08992 * 109.47330 * 60.00525 * 9 7 6 35 35 H 1.09005 * 109.46761 * 180.02562 * 9 7 6 36 36 H 1.09006 * 109.46896 * 299.99478 * 9 7 6 37 37 H 1.09001 * 109.63335 * 294.86772 * 10 7 6 38 38 H 1.08997 * 109.46196 * 174.74219 * 10 7 6 39 39 H 1.08992 * 109.46109 * 178.48812 * 11 10 7 40 40 H 1.09001 * 109.44619 * 58.52617 * 11 10 7 41 41 H 1.08998 * 109.49778 * 301.41256 * 12 11 10 42 42 H 1.08999 * 109.52751 * 181.32937 * 12 11 10 43 43 H 1.09001 * 109.47113 * 63.62662 * 15 13 6 44 44 H 1.09004 * 109.47088 * 183.62349 * 15 13 6 45 45 H 1.08995 * 109.46979 * 303.62519 * 15 13 6 46 46 H 1.08998 * 109.46520 * 54.14163 * 17 16 2 47 47 H 1.08999 * 109.46317 * 294.17498 * 17 16 2 48 48 H 1.09005 * 109.49931 * 299.23912 * 18 17 16 49 49 H 1.08995 * 109.50212 * 179.12035 * 18 17 16 50 50 H 1.08999 * 109.52228 * 182.44391 * 19 18 17 51 51 H 1.08999 * 109.57785 * 62.28638 * 19 18 17 52 52 H 0.97000 * 120.00173 * 179.97438 * 25 24 22 53 53 H 1.08997 * 109.46230 * 65.82575 * 30 16 2 54 54 H 1.08995 * 109.46671 * 305.85453 * 30 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 8 2.6267 -1.7620 -1.1235 6 7 1.8213 -0.1767 -2.4501 7 6 1.1931 1.1440 -2.5907 8 1 1.0711 1.5974 -1.6070 9 6 -0.1736 0.9931 -3.2620 10 6 2.1024 2.0277 -3.4580 11 6 2.3775 1.3182 -4.7859 12 6 3.1022 -0.0032 -4.5197 13 6 2.2092 -0.9074 -3.6642 14 1 1.3167 -1.1809 -4.2269 15 6 2.9795 -2.1716 -3.2779 16 7 2.0197 -0.6926 1.1993 17 6 1.5286 -2.0756 1.2457 18 6 2.1726 -2.8078 2.4253 19 6 1.8226 -2.0782 3.7251 20 6 2.3019 -0.6270 3.6317 21 1 3.3864 -0.6083 3.5230 22 6 1.9090 0.1142 4.8836 23 1 1.2643 0.9783 4.8196 24 6 2.3724 -0.3108 6.1107 25 7 3.1570 -1.3633 6.1886 26 14 1.8858 0.6084 7.6624 27 1 2.5113 -0.0437 8.8407 28 1 2.3516 2.0156 7.5707 29 1 0.4083 0.5846 7.8090 30 6 1.6541 0.0420 2.4172 31 1 -0.3633 0.6084 -0.8282 32 1 -0.3633 -1.0214 -0.1129 33 1 -0.3633 0.4130 0.9410 34 1 -0.8097 0.3527 -2.6511 35 1 -0.6376 1.9739 -3.3658 36 1 -0.0467 0.5454 -4.2478 37 1 3.0441 2.2051 -2.9386 38 1 1.6077 2.9798 -3.6499 39 1 3.0005 1.9538 -5.4150 40 1 1.4335 1.1188 -5.2932 41 1 4.0344 0.1934 -3.9903 42 1 3.3189 -0.4971 -5.4669 43 1 2.3262 -2.8368 -2.7133 44 1 3.3219 -2.6784 -4.1802 45 1 3.8391 -1.9003 -2.6652 46 1 1.7877 -2.5844 0.3173 47 1 0.4455 -2.0725 1.3679 48 1 3.2550 -2.8233 2.2968 49 1 1.7960 -3.8297 2.4687 50 1 2.3149 -2.5712 4.5635 51 1 0.7431 -2.0964 3.8748 52 1 3.4833 -1.6621 7.0518 53 1 0.5704 0.0351 2.5339 54 1 2.0044 1.0712 2.3397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595609794.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:19 Heat of formation + Delta-G solvation = -40.478838 kcal Electronic energy + Delta-G solvation = -30069.359844 eV Core-core repulsion = 26426.469056 eV Total energy + Delta-G solvation = -3642.890788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.00791 -39.96666 -38.41047 -36.17634 -34.69972 -33.85206 -33.51012 -31.66400 -30.41680 -29.92346 -27.40291 -26.90865 -26.10421 -24.57170 -23.77773 -23.27763 -22.55497 -21.39393 -20.13118 -19.22020 -18.37272 -17.74816 -17.16220 -16.80172 -16.42974 -16.10260 -15.94397 -15.63043 -15.27856 -15.02411 -14.86447 -14.77490 -14.52399 -14.17664 -14.07972 -14.01206 -13.74269 -13.58932 -13.29457 -13.16842 -13.01078 -12.80439 -12.78581 -12.69139 -12.50887 -12.47592 -12.44323 -12.22079 -11.94365 -11.76119 -11.72716 -11.62236 -11.45957 -11.40430 -11.25826 -10.92713 -10.66583 -10.39552 -9.76750 -9.45733 -9.01667 -8.05721 -6.21112 1.42449 1.44481 1.51935 1.68116 1.93338 2.44322 3.10424 3.20807 3.48214 3.75693 3.90092 3.98468 4.03718 4.06360 4.07236 4.23837 4.27998 4.32098 4.37666 4.40012 4.45663 4.55005 4.62793 4.64010 4.66071 4.73206 4.75165 4.82847 4.87802 4.88111 4.98499 5.00043 5.04047 5.09615 5.12564 5.15698 5.16729 5.19443 5.24929 5.26298 5.33974 5.38754 5.46365 5.52693 5.59106 5.64368 5.80739 5.96730 6.12373 6.21304 6.26732 6.46298 6.55145 6.92078 7.32988 7.46945 8.98873 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.022472 B = 0.003184 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.669290 B = 8792.720423 C = 9373.455404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.061 3.939 3 H 0.109 0.891 4 C 0.521 3.479 5 O -0.546 6.546 6 N -0.600 5.600 7 C 0.121 3.879 8 H 0.094 0.906 9 C -0.163 4.163 10 C -0.128 4.128 11 C -0.116 4.116 12 C -0.127 4.127 13 C 0.143 3.857 14 H 0.084 0.916 15 C -0.128 4.128 16 N -0.533 5.533 17 C 0.060 3.940 18 C -0.108 4.108 19 C -0.100 4.100 20 C 0.054 3.946 21 H -0.010 1.010 22 C -0.535 4.535 23 H 0.057 0.943 24 C 0.011 3.989 25 N -0.918 5.918 26 Si 0.958 3.042 27 H -0.287 1.287 28 H -0.269 1.269 29 H -0.269 1.269 30 C 0.084 3.916 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.048 0.952 42 H 0.087 0.913 43 H 0.048 0.952 44 H 0.057 0.943 45 H 0.042 0.958 46 H 0.096 0.904 47 H 0.022 0.978 48 H 0.039 0.961 49 H 0.061 0.939 50 H 0.056 0.944 51 H 0.024 0.976 52 H 0.259 0.741 53 H 0.028 0.972 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.163 6.561 -25.513 27.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.051 4.051 3 H 0.126 0.874 4 C 0.309 3.691 5 O -0.424 6.424 6 N -0.334 5.334 7 C 0.019 3.981 8 H 0.112 0.888 9 C -0.220 4.220 10 C -0.166 4.166 11 C -0.153 4.153 12 C -0.166 4.166 13 C 0.041 3.959 14 H 0.102 0.898 15 C -0.186 4.186 16 N -0.257 5.257 17 C -0.067 4.067 18 C -0.146 4.146 19 C -0.139 4.139 20 C 0.035 3.965 21 H 0.008 0.992 22 C -0.573 4.573 23 H 0.075 0.925 24 C -0.188 4.188 25 N -0.558 5.558 26 Si 0.783 3.217 27 H -0.212 1.212 28 H -0.194 1.194 29 H -0.194 1.194 30 C -0.043 4.043 31 H 0.116 0.884 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.114 0.886 47 H 0.041 0.959 48 H 0.058 0.942 49 H 0.079 0.921 50 H 0.074 0.926 51 H 0.043 0.957 52 H 0.068 0.932 53 H 0.046 0.954 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.230 5.879 -25.364 26.771 hybrid contribution -0.561 0.096 1.555 1.655 sum -6.791 5.975 -23.809 25.469 Atomic orbital electron populations 1.22483 0.94023 1.02924 1.04218 1.21737 0.95343 0.98794 0.89181 0.87367 1.20595 0.78622 0.85095 0.84774 1.90658 1.41521 1.24400 1.85865 1.48279 1.60646 1.19811 1.04639 1.21745 0.93491 0.81827 1.01049 0.88782 1.22225 0.94767 1.03700 1.01328 1.22011 0.99445 0.99042 0.96147 1.21544 1.01371 0.95484 0.96942 1.21977 0.98060 0.96676 0.99839 1.21346 0.97796 0.91728 0.85077 0.89771 1.22047 1.00454 0.96612 0.99442 1.61843 1.60077 1.02485 1.01291 1.22267 0.95491 0.89174 0.99803 1.21541 0.99577 0.98152 0.95309 1.21451 0.97702 0.98354 0.96363 1.18565 0.93959 0.92525 0.91449 0.99199 1.21493 1.30284 1.13097 0.92443 0.92473 1.25785 0.94933 0.95849 1.02188 1.70059 1.34693 1.25709 1.25306 0.85624 0.78599 0.78871 0.78616 1.21224 1.19440 1.19450 1.22018 0.97013 0.96526 0.88790 0.88385 0.92940 0.91635 0.92636 0.89250 0.91249 0.92837 0.88464 0.90645 0.90126 0.93310 0.89415 0.93260 0.92433 0.93850 0.88637 0.95946 0.94236 0.92055 0.92580 0.95671 0.93152 0.95423 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.32 8.10 71.98 0.58 -3.74 16 2 C 0.06 1.81 1.92 44.17 0.08 1.90 16 3 H 0.11 2.94 7.06 -2.38 -0.02 2.92 16 4 C 0.52 15.28 6.71 87.66 0.59 15.87 16 5 O -0.55 -19.89 9.04 -3.01 -0.03 -19.91 16 6 N -0.60 -12.62 2.68 -770.54 -2.06 -14.68 16 7 C 0.12 1.75 2.37 45.12 0.11 1.86 16 8 H 0.09 1.41 4.91 -2.39 -0.01 1.40 16 9 C -0.16 -1.66 8.54 71.98 0.61 -1.05 16 10 C -0.13 -1.51 5.58 30.82 0.17 -1.34 16 11 C -0.12 -1.20 5.68 30.62 0.17 -1.02 16 12 C -0.13 -1.85 5.37 30.67 0.16 -1.69 16 13 C 0.14 2.68 3.07 44.97 0.14 2.81 16 14 H 0.08 1.32 7.49 -2.39 -0.02 1.30 16 15 C -0.13 -3.13 7.59 71.98 0.55 -2.58 16 16 N -0.53 -20.96 4.48 -875.50 -3.92 -24.88 16 17 C 0.06 2.38 4.49 86.33 0.39 2.76 16 18 C -0.11 -4.82 6.09 30.65 0.19 -4.63 16 19 C -0.10 -5.18 5.02 30.67 0.15 -5.03 16 20 C 0.05 2.88 2.27 -11.49 -0.03 2.85 16 21 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 22 C -0.53 -30.24 8.56 25.60 0.22 -30.02 16 23 H 0.06 3.10 7.74 -2.91 -0.02 3.07 16 24 C 0.01 0.62 5.30 84.66 0.45 1.07 16 25 N -0.92 -55.32 11.35 21.45 0.24 -55.07 16 26 Si 0.96 44.38 29.54 68.60 2.03 46.40 16 27 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 28 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 29 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 30 C 0.08 3.62 4.26 86.33 0.37 3.99 16 31 H 0.10 1.71 4.24 -2.39 -0.01 1.70 16 32 H 0.05 1.37 6.88 -2.39 -0.02 1.36 16 33 H 0.06 1.72 6.37 -2.39 -0.02 1.70 16 34 H 0.05 0.68 6.80 -2.39 -0.02 0.66 16 35 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.07 0.64 5.71 -2.38 -0.01 0.63 16 37 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.08 0.63 6.49 -2.39 -0.02 0.62 16 41 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.05 1.42 6.71 -2.39 -0.02 1.41 16 44 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.04 1.32 6.79 -2.39 -0.02 1.30 16 46 H 0.10 3.82 5.10 -2.39 -0.01 3.81 16 47 H 0.02 0.86 6.76 -2.39 -0.02 0.84 16 48 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 49 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 50 H 0.06 3.25 6.15 -2.39 -0.01 3.23 16 51 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 53 H 0.03 1.16 6.60 -2.39 -0.02 1.15 16 54 H 0.06 2.54 8.07 -2.39 -0.02 2.52 16 Total: -1.00 -68.86 377.09 2.04 -66.82 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.87 Total: 19.28 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 4.91 Total: -17.97 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -5.74 Total: -94.63 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.03 Total: -19.91 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -68.86 2.04 -66.82 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595609794.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.342 kcal (2) G-P(sol) polarization free energy of solvation -68.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds