Wall clock time and date at job start Tue Mar 31 2020 15:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47103 * 2 1 4 4 C 1.50698 * 109.47071 * 239.99910 * 2 1 3 5 5 O 1.21289 * 120.00191 * 234.31790 * 4 2 1 6 6 N 1.34778 * 120.00220 * 54.31344 * 4 2 1 7 7 C 1.46928 * 120.63531 * 205.67927 * 6 4 2 8 8 H 1.08997 * 109.58311 * 113.65477 * 7 6 4 9 9 C 1.52995 * 109.58334 * 353.37393 * 7 6 4 10 10 C 1.53188 * 108.77506 * 233.59035 * 7 6 4 11 11 C 1.53042 * 109.31084 * 305.36044 * 10 7 6 12 12 C 1.53046 * 109.53780 * 61.37020 * 11 10 7 13 13 C 1.46924 * 120.62807 * 25.40192 * 6 4 2 14 14 H 1.08997 * 109.58633 * 246.20171 * 13 6 4 15 15 C 1.53002 * 109.58497 * 6.62447 * 13 6 4 16 16 N 1.46907 * 109.47221 * 120.00339 * 2 1 3 17 17 C 1.46843 * 110.99805 * 183.42331 * 16 2 1 18 18 C 1.53039 * 109.52229 * 185.83742 * 17 16 2 19 19 C 1.53119 * 109.27688 * 300.81902 * 18 17 16 20 20 C 1.53123 * 109.16382 * 57.65110 * 19 18 17 21 21 H 1.09003 * 109.50277 * 62.28758 * 20 19 18 22 22 C 1.50702 * 109.50503 * 182.40496 * 20 19 18 23 23 H 1.08002 * 119.99494 * 119.80488 * 22 20 19 24 24 C 1.37874 * 119.99856 * 299.80557 * 22 20 19 25 25 N 1.31511 * 120.00254 * 0.02562 * 24 22 20 26 26 Si 1.86800 * 119.99450 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47442 * 90.00378 * 26 24 22 28 28 H 1.48500 * 109.46818 * 209.99816 * 26 24 22 29 29 H 1.48494 * 109.47497 * 329.99741 * 26 24 22 30 30 C 1.46848 * 110.99421 * 307.62666 * 16 2 1 31 31 H 1.09000 * 109.47035 * 319.88272 * 1 2 3 32 32 H 1.09001 * 109.47170 * 79.88381 * 1 2 3 33 33 H 1.09000 * 109.46666 * 199.88480 * 1 2 3 34 34 H 1.08999 * 109.47729 * 56.81682 * 9 7 6 35 35 H 1.09008 * 109.47296 * 176.81606 * 9 7 6 36 36 H 1.08998 * 109.47706 * 296.81220 * 9 7 6 37 37 H 1.08994 * 109.50441 * 65.31152 * 10 7 6 38 38 H 1.09001 * 109.49784 * 185.38072 * 10 7 6 39 39 H 1.08997 * 109.46056 * 181.38656 * 11 10 7 40 40 H 1.08997 * 109.46188 * 301.34844 * 11 10 7 41 41 H 1.08999 * 109.49848 * 58.58447 * 12 11 10 42 42 H 1.08998 * 109.49986 * 178.65147 * 12 11 10 43 43 H 1.08999 * 109.47094 * 51.96766 * 15 13 6 44 44 H 1.09003 * 109.47404 * 171.96548 * 15 13 6 45 45 H 1.09004 * 109.47423 * 291.96186 * 15 13 6 46 46 H 1.09002 * 109.45790 * 305.84633 * 17 16 2 47 47 H 1.08996 * 109.46811 * 65.81910 * 17 16 2 48 48 H 1.09006 * 109.50140 * 60.75598 * 18 17 16 49 49 H 1.09001 * 109.50590 * 180.83735 * 18 17 16 50 50 H 1.08998 * 109.52139 * 297.74747 * 19 18 17 51 51 H 1.09002 * 109.52466 * 177.55816 * 19 18 17 52 52 H 0.96997 * 119.99814 * 180.02562 * 25 24 22 53 53 H 1.09005 * 109.46427 * 54.14569 * 30 16 2 54 54 H 1.08993 * 109.45472 * 294.17432 * 30 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.8121 -1.6331 -1.1222 6 7 1.6151 -0.3206 -2.4513 7 6 1.6060 -1.2655 -3.5764 8 1 0.5780 -1.4581 -3.8834 9 6 2.2682 -2.5771 -3.1500 10 6 2.3870 -0.6513 -4.7424 11 6 1.8044 0.7249 -5.0726 12 6 1.9461 1.6455 -3.8582 13 6 1.1549 1.0557 -2.6809 14 1 0.0910 1.0504 -2.9181 15 6 1.3991 1.8944 -1.4248 16 7 2.0198 -0.6926 1.1994 17 6 3.4854 -0.6417 1.2749 18 6 3.9667 -1.4930 2.4521 19 6 3.3513 -0.9578 3.7480 20 6 1.8252 -0.9761 3.6248 21 1 1.4829 -2.0028 3.4941 22 6 1.2125 -0.3958 4.8734 23 1 0.5865 0.4820 4.8099 24 6 1.4513 -0.9854 6.0966 25 7 2.2140 -2.0540 6.1739 26 14 0.6912 -0.2664 7.6441 27 1 -0.6349 -0.8913 7.8807 28 1 1.5794 -0.5364 8.8032 29 1 0.5251 1.1999 7.4788 30 6 1.4060 -0.1398 2.4136 31 1 -0.3633 0.7859 0.6622 32 1 -0.3633 0.1805 -1.0117 33 1 -0.3633 -0.9664 0.3495 34 1 1.7529 -2.9773 -2.2768 35 1 2.2101 -3.2960 -3.9673 36 1 3.3135 -2.3927 -2.9021 37 1 3.4350 -0.5450 -4.4625 38 1 2.3074 -1.2994 -5.6151 39 1 2.3425 1.1537 -5.9180 40 1 0.7500 0.6210 -5.3284 41 1 2.9983 1.7301 -3.5866 42 1 1.5528 2.6324 -4.1019 43 1 2.4379 1.7871 -1.1125 44 1 1.1914 2.9423 -1.6414 45 1 0.7421 1.5516 -0.6254 46 1 3.9103 -1.0290 0.3489 47 1 3.8061 0.3902 1.4179 48 1 3.6582 -2.5278 2.3029 49 1 5.0536 -1.4431 2.5169 50 1 3.6908 0.0640 3.9175 51 1 3.6569 -1.5875 4.5836 52 1 2.3815 -2.4690 7.0344 53 1 0.3207 -0.1625 2.3146 54 1 1.7366 0.8896 2.5511 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595609796.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:27 Heat of formation + Delta-G solvation = 4.057650 kcal Electronic energy + Delta-G solvation = -30275.318325 eV Core-core repulsion = 26634.358784 eV Total energy + Delta-G solvation = -3640.959541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.26087 -39.77006 -38.28250 -36.84683 -35.01813 -33.82801 -33.51896 -31.68374 -30.81816 -29.77916 -27.36938 -26.89510 -26.05881 -24.80323 -23.10615 -22.62463 -22.56732 -21.53651 -20.40254 -19.97646 -18.48198 -17.38800 -17.20585 -16.81609 -16.76387 -16.31516 -15.76084 -15.52069 -15.23799 -15.00295 -14.84289 -14.68097 -14.39307 -14.25013 -14.09306 -13.98741 -13.69874 -13.59641 -13.38255 -13.07434 -12.88113 -12.83258 -12.74424 -12.56902 -12.51819 -12.45845 -12.27588 -12.01720 -11.81724 -11.72649 -11.69492 -11.61227 -11.48713 -11.43374 -11.22780 -10.88505 -10.62964 -10.41384 -9.98640 -9.38577 -8.87978 -8.05356 -6.20450 1.42876 1.43241 1.53661 1.59402 1.98400 2.44690 3.09700 3.21428 3.53081 3.79625 3.87504 3.91260 4.00061 4.08502 4.16592 4.23262 4.27461 4.27740 4.30912 4.42281 4.45863 4.58317 4.59548 4.64170 4.70285 4.72320 4.79488 4.84033 4.86316 4.88725 4.92315 4.98563 5.01916 5.08570 5.11146 5.15418 5.17907 5.21961 5.22546 5.25756 5.32409 5.38651 5.40309 5.52673 5.53246 5.64835 5.83010 5.97675 6.13587 6.22689 6.29752 6.48242 6.59427 6.93227 7.31196 7.47676 8.99554 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.024958 B = 0.003228 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.617549 B = 8671.491605 C = 9189.497774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.020 3.980 3 H 0.119 0.881 4 C 0.528 3.472 5 O -0.544 6.544 6 N -0.620 5.620 7 C 0.145 3.855 8 H 0.087 0.913 9 C -0.137 4.137 10 C -0.126 4.126 11 C -0.116 4.116 12 C -0.126 4.126 13 C 0.141 3.859 14 H 0.097 0.903 15 C -0.208 4.208 16 N -0.540 5.540 17 C 0.066 3.934 18 C -0.107 4.107 19 C -0.101 4.101 20 C 0.054 3.946 21 H -0.011 1.011 22 C -0.532 4.532 23 H 0.058 0.942 24 C 0.010 3.990 25 N -0.919 5.919 26 Si 0.958 3.042 27 H -0.276 1.276 28 H -0.286 1.286 29 H -0.264 1.264 30 C 0.084 3.916 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.034 0.966 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.050 0.950 42 H 0.097 0.903 43 H 0.048 0.952 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.086 0.914 47 H 0.019 0.981 48 H 0.038 0.962 49 H 0.061 0.939 50 H 0.025 0.975 51 H 0.055 0.945 52 H 0.259 0.741 53 H 0.070 0.930 54 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.455 9.665 -24.976 27.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.090 4.090 3 H 0.136 0.864 4 C 0.317 3.683 5 O -0.421 6.421 6 N -0.356 5.356 7 C 0.042 3.958 8 H 0.105 0.895 9 C -0.194 4.194 10 C -0.164 4.164 11 C -0.153 4.153 12 C -0.164 4.164 13 C 0.039 3.961 14 H 0.115 0.885 15 C -0.264 4.264 16 N -0.266 5.266 17 C -0.062 4.062 18 C -0.144 4.144 19 C -0.139 4.139 20 C 0.035 3.965 21 H 0.007 0.993 22 C -0.571 4.571 23 H 0.076 0.924 24 C -0.188 4.188 25 N -0.558 5.558 26 Si 0.783 3.217 27 H -0.202 1.202 28 H -0.212 1.212 29 H -0.189 1.189 30 C -0.043 4.043 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.116 0.884 43 H 0.067 0.933 44 H 0.114 0.886 45 H 0.117 0.883 46 H 0.104 0.896 47 H 0.038 0.962 48 H 0.057 0.943 49 H 0.080 0.920 50 H 0.044 0.956 51 H 0.074 0.926 52 H 0.068 0.932 53 H 0.088 0.912 54 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -3.105 8.561 -24.839 26.456 hybrid contribution 0.312 0.455 1.504 1.602 sum -2.794 9.016 -23.335 25.172 Atomic orbital electron populations 1.21905 0.91292 1.02744 1.03682 1.23408 0.97998 0.98870 0.88735 0.86443 1.20691 0.79606 0.83172 0.84831 1.90628 1.32787 1.31953 1.86691 1.48250 1.66853 1.12515 1.08016 1.21325 0.99983 0.88410 0.86039 0.89510 1.22043 1.01386 0.96179 0.99778 1.21958 0.98994 0.97965 0.97492 1.21518 1.02168 0.93996 0.97615 1.22047 1.00057 0.99987 0.94326 1.21462 0.99417 0.79332 0.95849 0.88508 1.23444 1.02033 1.02170 0.98718 1.61629 1.06600 1.56569 1.01763 1.22115 0.87791 0.96989 0.99304 1.21522 0.98801 0.98826 0.95293 1.21458 0.98047 0.98134 0.96286 1.18571 0.92466 0.93904 0.91591 0.99259 1.21525 1.30056 1.12752 0.92746 0.92394 1.25791 0.95622 0.95246 1.02169 1.70071 1.38687 1.21693 1.25388 0.85567 0.78180 0.79087 0.78866 1.20163 1.21208 1.18856 1.22031 0.98371 0.95241 0.88677 0.90185 0.89026 0.93171 0.94641 0.91556 0.92943 0.93370 0.89458 0.90556 0.90308 0.93068 0.88431 0.93316 0.88638 0.88277 0.89607 0.96242 0.94269 0.92049 0.95587 0.92610 0.93201 0.91175 0.96227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 6.28 71.98 0.45 -2.98 16 2 C 0.02 0.59 1.49 44.17 0.07 0.66 16 3 H 0.12 3.09 3.77 -12.42 -0.05 3.04 16 4 C 0.53 15.77 5.81 87.66 0.51 16.28 16 5 O -0.54 -20.44 9.96 -3.06 -0.03 -20.47 16 6 N -0.62 -13.27 2.68 -770.54 -2.06 -15.34 16 7 C 0.14 2.77 3.49 44.97 0.16 2.93 16 8 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 9 C -0.14 -3.41 7.65 71.98 0.55 -2.86 16 10 C -0.13 -1.82 5.37 30.67 0.16 -1.66 16 11 C -0.12 -1.17 5.88 30.62 0.18 -0.99 16 12 C -0.13 -1.44 5.40 30.82 0.17 -1.27 16 13 C 0.14 2.02 2.42 45.12 0.11 2.13 16 14 H 0.10 1.02 7.77 -2.39 -0.02 1.00 16 15 C -0.21 -3.15 6.93 71.98 0.50 -2.65 16 16 N -0.54 -21.28 4.32 -875.51 -3.78 -25.07 16 17 C 0.07 2.63 5.10 86.33 0.44 3.07 16 18 C -0.11 -4.78 6.09 30.65 0.19 -4.60 16 19 C -0.10 -5.21 5.03 30.68 0.15 -5.06 16 20 C 0.05 2.85 2.26 -11.49 -0.03 2.83 16 21 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 22 C -0.53 -30.00 8.56 25.60 0.22 -29.78 16 23 H 0.06 3.13 7.74 -2.91 -0.02 3.10 16 24 C 0.01 0.57 5.30 84.65 0.45 1.02 16 25 N -0.92 -55.35 11.36 21.45 0.24 -55.10 16 26 Si 0.96 44.33 29.54 68.60 2.03 46.35 16 27 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 28 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 29 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 30 C 0.08 3.62 4.33 86.33 0.37 3.99 16 31 H 0.08 1.79 7.17 -2.39 -0.02 1.78 16 32 H 0.09 1.69 5.66 -2.39 -0.01 1.68 16 33 H 0.05 1.50 8.05 -2.39 -0.02 1.48 16 34 H 0.03 1.10 6.86 -2.39 -0.02 1.08 16 35 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.05 1.57 6.76 -2.39 -0.02 1.56 16 37 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.05 0.95 6.44 -2.39 -0.02 0.93 16 44 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.10 1.69 2.79 -2.38 -0.01 1.69 16 46 H 0.09 3.48 5.36 -2.39 -0.01 3.47 16 47 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 48 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 49 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 50 H 0.03 1.30 8.14 -2.39 -0.02 1.29 16 51 H 0.06 3.23 6.16 -2.39 -0.01 3.22 16 52 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 53 H 0.07 2.87 6.26 -2.38 -0.01 2.86 16 54 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -70.06 377.80 1.87 -68.19 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.82 Total: 20.39 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 4.65 Total: -18.95 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -5.60 Total: -95.51 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.03 Total: -20.47 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -70.06 1.87 -68.19 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595609796.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.247 kcal (2) G-P(sol) polarization free energy of solvation -70.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds