Wall clock time and date at job start Tue Mar 31 2020 15:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.52996 * 109.46969 * 240.00061 * 2 1 3 5 5 C 1.53002 * 109.46972 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47415 * 59.99860 * 5 4 2 7 7 C 1.53006 * 109.47164 * 300.00027 * 6 5 4 8 8 C 1.52997 * 109.47092 * 120.00120 * 2 1 3 9 9 H 1.09000 * 109.47140 * 59.99774 * 8 2 1 10 10 N 1.46506 * 109.47277 * 299.99975 * 8 2 1 11 11 C 1.46498 * 119.99972 * 300.00072 * 10 8 2 12 12 C 1.34781 * 120.00091 * 119.99523 * 10 8 2 13 13 O 1.21275 * 119.99907 * 0.02562 * 12 10 8 14 14 C 1.50696 * 119.99797 * 180.02562 * 12 10 8 15 15 N 1.46898 * 109.47064 * 180.02562 * 14 12 10 16 16 C 1.46846 * 111.00077 * 66.04736 * 15 14 12 17 17 C 1.53037 * 109.52407 * 174.16218 * 16 15 14 18 18 C 1.53121 * 109.28003 * 59.18190 * 17 16 15 19 19 C 1.53121 * 109.15574 * 302.34550 * 18 17 16 20 20 H 1.08998 * 109.50545 * 297.71395 * 19 18 17 21 21 C 1.50704 * 109.50107 * 177.63762 * 19 18 17 22 22 H 1.08002 * 119.99492 * 240.00263 * 21 19 18 23 23 C 1.37880 * 120.00007 * 59.99597 * 21 19 18 24 24 N 1.31506 * 120.00113 * 0.02562 * 23 21 19 25 25 Si 1.86800 * 119.99625 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47248 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46708 * 120.00334 * 25 23 21 28 28 H 1.48498 * 109.47065 * 239.99894 * 25 23 21 29 29 C 1.46848 * 110.99853 * 301.83889 * 15 14 12 30 30 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47067 * 300.00027 * 1 2 3 32 32 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 33 33 H 1.08992 * 109.47534 * 60.00418 * 4 2 1 34 34 H 1.08996 * 109.47134 * 299.99612 * 4 2 1 35 35 H 1.09000 * 109.46986 * 299.99742 * 5 4 2 36 36 H 1.09001 * 109.47601 * 180.02562 * 5 4 2 37 37 H 1.09001 * 109.46922 * 180.02562 * 6 5 4 38 38 H 1.09000 * 109.47140 * 59.99976 * 6 5 4 39 39 H 1.08993 * 109.46955 * 180.02562 * 7 6 5 40 40 H 1.09000 * 109.47050 * 300.00004 * 7 6 5 41 41 H 1.09004 * 109.47306 * 89.99571 * 11 10 8 42 42 H 1.08996 * 109.47288 * 209.99704 * 11 10 8 43 43 H 1.09005 * 109.47352 * 330.00019 * 11 10 8 44 44 H 1.08995 * 109.47421 * 300.00732 * 14 12 10 45 45 H 1.09006 * 109.46863 * 60.00675 * 14 12 10 46 46 H 1.09006 * 109.46241 * 294.17920 * 16 15 14 47 47 H 1.08998 * 109.46272 * 54.14427 * 16 15 14 48 48 H 1.08998 * 109.49973 * 179.12135 * 17 16 15 49 49 H 1.08999 * 109.50234 * 299.23759 * 17 16 15 50 50 H 1.08999 * 109.52395 * 62.24681 * 18 17 16 51 51 H 1.08993 * 109.52118 * 182.44031 * 18 17 16 52 52 H 0.96997 * 120.00444 * 179.97438 * 24 23 21 53 53 H 1.08996 * 109.46365 * 305.84911 * 29 15 14 54 54 H 1.09000 * 109.46763 * 65.82586 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2489 6 6 4.0795 -1.4434 0.0003 7 6 3.5695 -0.7221 1.2496 8 6 2.0400 -0.7213 1.2492 9 1 1.6766 -1.7489 1.2492 10 7 1.5517 -0.0307 2.4455 11 6 1.9056 1.3719 2.6773 12 6 0.7767 -0.6857 3.3326 13 8 0.4840 -1.8469 3.1408 14 6 0.2740 0.0249 4.5627 15 7 -0.5416 -0.8986 5.3627 16 6 0.2770 -1.9923 5.9011 17 6 -0.5708 -2.8495 6.8437 18 6 -1.7680 -3.4143 6.0741 19 6 -2.5769 -2.2564 5.4830 20 1 -2.9644 -1.6341 6.2896 21 6 -3.7246 -2.8053 4.6752 22 1 -3.8026 -2.5758 3.6227 23 6 -4.6750 -3.6006 5.2797 24 7 -4.5802 -3.8797 6.5613 25 14 -6.0972 -4.2815 4.2782 26 1 -5.9748 -3.8246 2.8705 27 1 -6.0668 -5.7656 4.3209 28 1 -7.3802 -3.7961 4.8469 29 6 -1.6710 -1.4164 4.5798 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6768 -0.2074 -2.1392 34 1 1.6767 -1.7489 -1.2492 35 1 3.9337 0.3058 -1.2487 36 1 3.9334 -1.2352 -2.1391 37 1 5.1695 -1.4433 0.0007 38 1 3.7158 -2.4709 0.0001 39 1 3.9329 -1.2359 2.1395 40 1 3.9332 0.3055 1.2498 41 1 1.1543 2.0165 2.2210 42 1 1.9462 1.5639 3.7495 43 1 2.8796 1.5790 2.2339 44 1 1.1215 0.3679 5.1561 45 1 -0.3318 0.8811 4.2657 46 1 0.6441 -2.6091 5.0807 47 1 1.1225 -1.5771 6.4495 48 1 0.0329 -3.6703 7.2310 49 1 -0.9267 -2.2366 7.6717 50 1 -1.4129 -4.0586 5.2698 51 1 -2.3980 -3.9901 6.7520 52 1 -5.2489 -4.4388 6.9867 53 1 -2.2404 -0.5829 4.1687 54 1 -1.2949 -2.0359 3.7656 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595614398.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:47 Heat of formation + Delta-G solvation = -68.918026 kcal Electronic energy + Delta-G solvation = -29673.332684 eV Core-core repulsion = 26029.208680 eV Total energy + Delta-G solvation = -3644.124003 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.69497 -40.05469 -38.52298 -36.03289 -35.47115 -33.59216 -33.43310 -31.66522 -31.15255 -28.36371 -27.87645 -26.95895 -26.83376 -24.19952 -23.28960 -22.96016 -22.22779 -20.81855 -20.37988 -20.03157 -18.45621 -17.98870 -17.35219 -16.84526 -16.56418 -16.14926 -15.74808 -15.53981 -15.50464 -15.15109 -14.96669 -14.79576 -14.64269 -14.26912 -13.96121 -13.87210 -13.68907 -13.51653 -13.33904 -13.28508 -12.97165 -12.92677 -12.85158 -12.79789 -12.57183 -12.53080 -12.27215 -12.07570 -11.86300 -11.78826 -11.64915 -11.48415 -11.39254 -11.32156 -11.16011 -11.08839 -10.86735 -10.66669 -10.38576 -9.50453 -8.94544 -8.09087 -6.22633 1.36634 1.37616 1.49992 1.64916 2.07925 2.41115 3.09487 3.16886 3.54989 3.76775 3.80535 3.90839 4.13077 4.14681 4.18630 4.21296 4.29627 4.38346 4.43071 4.47863 4.50935 4.52191 4.53842 4.57481 4.69030 4.74849 4.77261 4.78753 4.80796 4.92503 4.94931 4.97312 5.03465 5.07581 5.11137 5.14923 5.17738 5.23045 5.25301 5.26254 5.31991 5.38100 5.41022 5.50707 5.53311 5.62135 5.71391 5.94979 6.09708 6.17877 6.21384 6.45961 6.49779 6.88807 7.28452 7.44243 8.95953 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.015465 B = 0.003444 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.125151 B = 8129.002367 C = 9075.440994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 H 0.094 0.906 4 C -0.113 4.113 5 C -0.113 4.113 6 C -0.117 4.117 7 C -0.117 4.117 8 C 0.141 3.859 9 H 0.055 0.945 10 N -0.607 5.607 11 C 0.067 3.933 12 C 0.474 3.526 13 O -0.575 6.575 14 C 0.038 3.962 15 N -0.520 5.520 16 C 0.059 3.941 17 C -0.109 4.109 18 C -0.100 4.100 19 C 0.056 3.944 20 H -0.002 1.002 21 C -0.535 4.535 22 H 0.042 0.958 23 C 0.014 3.986 24 N -0.914 5.914 25 Si 0.954 3.046 26 H -0.272 1.272 27 H -0.279 1.279 28 H -0.274 1.274 29 C 0.069 3.931 30 H 0.024 0.976 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.044 0.956 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.045 0.955 39 H 0.051 0.949 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.133 0.867 45 H 0.116 0.884 46 H 0.031 0.969 47 H 0.088 0.912 48 H 0.065 0.935 49 H 0.056 0.944 50 H 0.009 0.991 51 H 0.058 0.942 52 H 0.261 0.739 53 H 0.043 0.957 54 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.941 13.800 -12.432 27.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 H 0.112 0.888 4 C -0.152 4.152 5 C -0.151 4.151 6 C -0.155 4.155 7 C -0.156 4.156 8 C 0.037 3.963 9 H 0.073 0.927 10 N -0.340 5.340 11 C -0.075 4.075 12 C 0.262 3.738 13 O -0.455 6.455 14 C -0.093 4.093 15 N -0.242 5.242 16 C -0.068 4.068 17 C -0.147 4.147 18 C -0.138 4.138 19 C 0.037 3.963 20 H 0.016 0.984 21 C -0.573 4.573 22 H 0.060 0.940 23 C -0.185 4.185 24 N -0.554 5.554 25 Si 0.779 3.221 26 H -0.197 1.197 27 H -0.205 1.205 28 H -0.199 1.199 29 C -0.058 4.058 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.107 0.893 43 H 0.111 0.889 44 H 0.150 0.850 45 H 0.134 0.866 46 H 0.049 0.951 47 H 0.106 0.894 48 H 0.083 0.917 49 H 0.075 0.925 50 H 0.027 0.973 51 H 0.077 0.923 52 H 0.070 0.930 53 H 0.061 0.939 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 20.496 13.379 -11.965 27.244 hybrid contribution -1.061 -1.401 -0.952 1.999 sum 19.435 11.978 -12.916 26.230 Atomic orbital electron populations 1.21741 0.96291 1.00308 1.01535 1.21387 0.94657 1.00650 0.93932 0.88793 1.21587 0.96590 0.99916 0.97062 1.21527 0.94302 1.01644 0.97607 1.21514 1.01151 0.98731 0.94138 1.21798 0.93106 1.02313 0.98343 1.21089 0.94637 0.96262 0.84328 0.92697 1.48198 1.49972 1.13737 1.22054 1.22087 1.02330 0.79356 1.03727 1.22666 0.77841 0.87158 0.86118 1.90666 1.58066 1.19396 1.77326 1.22566 0.99443 0.96641 0.90689 1.62392 1.08984 1.18462 1.34401 1.22099 0.95220 0.92389 0.97119 1.21562 0.96676 0.98432 0.97983 1.21404 0.95621 0.98857 0.97922 1.18548 0.91887 0.92328 0.93499 0.98434 1.21510 1.09315 1.31073 0.95445 0.93990 1.25714 1.00316 0.96463 0.95982 1.70032 1.35889 1.38400 1.11041 0.85574 0.79444 0.78098 0.78954 1.19661 1.20495 1.19911 1.22162 0.90897 0.97073 0.95712 0.95666 0.93919 0.91248 0.90430 0.93740 0.90250 0.91036 0.90109 0.93607 0.93066 0.89287 0.91658 0.89290 0.88856 0.84959 0.86645 0.95109 0.89367 0.91684 0.92505 0.97260 0.92333 0.92995 0.93856 0.94084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.04 71.98 0.65 -2.59 16 2 C -0.09 -1.54 2.11 -10.80 -0.02 -1.57 16 3 H 0.09 1.26 7.67 -2.39 -0.02 1.24 16 4 C -0.11 -1.78 5.20 30.59 0.16 -1.62 16 5 C -0.11 -1.35 5.92 30.59 0.18 -1.16 16 6 C -0.12 -1.67 5.92 30.60 0.18 -1.49 16 7 C -0.12 -1.88 5.18 30.58 0.16 -1.72 16 8 C 0.14 3.06 1.96 44.97 0.09 3.15 16 9 H 0.05 1.72 6.90 -2.39 -0.02 1.70 16 10 N -0.61 -13.18 2.00 -822.67 -1.64 -14.82 16 11 C 0.07 0.79 9.30 127.77 1.19 1.98 16 12 C 0.47 14.50 7.09 87.66 0.62 15.12 16 13 O -0.57 -24.02 10.95 -3.01 -0.03 -24.06 16 14 C 0.04 1.04 4.41 85.56 0.38 1.42 16 15 N -0.52 -19.96 4.86 -900.94 -4.38 -24.33 16 16 C 0.06 2.25 5.09 86.33 0.44 2.69 16 17 C -0.11 -4.64 6.09 30.65 0.19 -4.45 16 18 C -0.10 -5.35 5.02 30.68 0.15 -5.19 16 19 C 0.06 3.14 2.26 -11.49 -0.03 3.12 16 20 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 21 C -0.53 -32.47 8.57 25.60 0.22 -32.25 16 22 H 0.04 2.56 7.74 -2.91 -0.02 2.54 16 23 C 0.01 0.82 5.30 84.66 0.45 1.27 16 24 N -0.91 -55.90 11.35 21.45 0.24 -55.65 16 25 Si 0.95 46.61 29.54 68.60 2.03 48.64 16 26 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 27 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 28 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 29 C 0.07 3.30 4.20 86.33 0.36 3.67 16 30 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.04 1.07 7.60 -2.39 -0.02 1.05 16 32 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.09 0.99 6.66 -2.39 -0.02 0.97 16 41 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 42 H 0.09 0.81 6.44 -2.39 -0.02 0.79 16 43 H 0.09 0.70 6.43 -2.38 -0.02 0.68 16 44 H 0.13 2.61 7.32 -2.39 -0.02 2.59 16 45 H 0.12 2.76 8.11 -2.38 -0.02 2.74 16 46 H 0.03 1.31 6.00 -2.38 -0.01 1.30 16 47 H 0.09 2.68 8.06 -2.39 -0.02 2.66 16 48 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 49 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 50 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 51 H 0.06 3.45 6.15 -2.39 -0.01 3.43 16 52 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 53 H 0.04 2.05 8.12 -2.39 -0.02 2.03 16 54 H 0.04 2.18 5.36 -2.39 -0.01 2.16 16 Total: -1.00 -75.52 393.57 2.43 -73.09 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.84 Total: 16.78 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: 5.37 Total: -19.65 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -5.77 Total: -94.81 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.03 Total: -24.06 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -75.52 2.43 -73.09 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614398.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.177 kcal (2) G-P(sol) polarization free energy of solvation -75.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds