Wall clock time and date at job start Tue Mar 31 2020 15:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47018 * 2 1 4 4 C 1.52992 * 109.47498 * 239.99496 * 2 1 3 5 5 C 1.53003 * 109.47070 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.46739 * 60.00565 * 5 4 2 7 7 C 1.53001 * 109.46832 * 299.99123 * 6 5 4 8 8 C 1.53003 * 109.46742 * 60.00879 * 7 6 5 9 9 H 1.09002 * 109.47021 * 179.97438 * 8 7 6 10 10 N 1.46497 * 109.47239 * 59.99562 * 8 7 6 11 11 C 1.46503 * 119.99977 * 247.69691 * 10 8 7 12 12 C 1.34771 * 120.00198 * 67.69584 * 10 8 7 13 13 O 1.21283 * 120.00225 * 0.02562 * 12 10 8 14 14 C 1.50701 * 120.00244 * 180.02562 * 12 10 8 15 15 N 1.46895 * 109.47289 * 180.02562 * 14 12 10 16 16 C 1.46846 * 110.99891 * 294.20666 * 15 14 12 17 17 C 1.53038 * 109.52604 * 174.15932 * 16 15 14 18 18 C 1.53123 * 109.27508 * 59.17901 * 17 16 15 19 19 C 1.53110 * 109.16175 * 302.34551 * 18 17 16 20 20 H 1.08998 * 109.50720 * 297.71132 * 19 18 17 21 21 C 1.50708 * 109.50399 * 177.59663 * 19 18 17 22 22 H 1.08001 * 119.99613 * 240.19888 * 21 19 18 23 23 C 1.37875 * 119.99946 * 60.19765 * 21 19 18 24 24 N 1.31513 * 120.00105 * 359.97438 * 23 21 19 25 25 Si 1.86802 * 119.99964 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.46846 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47057 * 119.99862 * 25 23 21 28 28 H 1.48493 * 109.46981 * 239.99982 * 25 23 21 29 29 C 1.46849 * 111.00123 * 169.99932 * 15 14 12 30 30 H 1.08996 * 109.47607 * 332.30650 * 1 2 3 31 31 H 1.09001 * 109.46659 * 92.30983 * 1 2 3 32 32 H 1.09007 * 109.46972 * 212.30421 * 1 2 3 33 33 H 1.08993 * 109.47292 * 299.99776 * 4 2 1 34 34 H 1.08999 * 109.47296 * 60.00049 * 4 2 1 35 35 H 1.08997 * 109.47442 * 300.00501 * 5 4 2 36 36 H 1.09002 * 109.47021 * 179.97438 * 5 4 2 37 37 H 1.09001 * 109.46736 * 180.02562 * 6 5 4 38 38 H 1.08993 * 109.47663 * 59.99943 * 6 5 4 39 39 H 1.08993 * 109.47666 * 300.00818 * 7 6 5 40 40 H 1.09004 * 109.46836 * 180.02562 * 7 6 5 41 41 H 1.08991 * 109.47458 * 96.06753 * 11 10 8 42 42 H 1.09006 * 109.47289 * 216.07085 * 11 10 8 43 43 H 1.09009 * 109.47147 * 336.06585 * 11 10 8 44 44 H 1.09005 * 109.47064 * 299.99847 * 14 12 10 45 45 H 1.08995 * 109.47142 * 59.99557 * 14 12 10 46 46 H 1.08998 * 109.46314 * 294.17657 * 16 15 14 47 47 H 1.08999 * 109.46303 * 54.14553 * 16 15 14 48 48 H 1.08998 * 109.50796 * 299.24078 * 17 16 15 49 49 H 1.09005 * 109.53705 * 179.13675 * 17 16 15 50 50 H 1.09002 * 109.51998 * 182.44136 * 18 17 16 51 51 H 1.09006 * 109.57304 * 62.28484 * 18 17 16 52 52 H 0.96998 * 120.00238 * 179.97438 * 24 23 21 53 53 H 1.08996 * 109.46014 * 305.84954 * 29 15 14 54 54 H 1.08996 * 109.46218 * 65.83178 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5701 -0.7207 -1.2493 6 6 4.0805 -1.4416 0.0000 7 6 3.5704 -0.7202 1.2492 8 6 2.0404 -0.7208 1.2494 9 1 1.6770 -0.2072 2.1395 10 7 1.5526 -2.1022 1.2498 11 6 0.8545 -2.6328 0.0761 12 6 1.7461 -2.8849 2.3297 13 8 2.3236 -2.4455 3.3015 14 6 1.2448 -4.3061 2.3298 15 7 1.5769 -4.9423 3.6115 16 6 3.0304 -5.0790 3.7702 17 6 3.3444 -5.6091 5.1710 18 6 2.6614 -6.9661 5.3628 19 6 1.1544 -6.8055 5.1447 20 1 0.7495 -6.1218 5.8908 21 6 0.4815 -8.1478 5.2736 22 1 -0.0700 -8.5576 4.4402 23 6 0.5698 -8.8527 6.4552 24 7 1.2418 -8.3539 7.4697 25 14 -0.2637 -10.5168 6.6147 26 1 -0.9493 -10.8511 5.3405 27 1 0.7555 -11.5540 6.9159 28 1 -1.2602 -10.4679 7.7145 29 6 0.9038 -6.2407 3.7446 30 1 -0.3634 0.9099 0.4776 31 1 -0.3633 -0.0414 -1.0269 32 1 -0.3633 -0.8687 0.5492 33 1 1.6768 -1.7489 -1.2490 34 1 1.6768 -0.2076 -2.1391 35 1 3.9330 0.3071 -1.2495 36 1 3.9335 -1.2350 -2.1390 37 1 5.1705 -1.4408 0.0001 38 1 3.7176 -2.4693 0.0003 39 1 3.9333 0.3076 1.2489 40 1 3.9344 -1.2335 2.1392 41 1 1.5609 -3.1748 -0.5526 42 1 0.0627 -3.3087 0.3991 43 1 0.4204 -1.8096 -0.4914 44 1 0.1635 -4.3100 2.1921 45 1 1.7165 -4.8578 1.5168 46 1 3.4132 -5.7753 3.0241 47 1 3.5035 -4.1063 3.6355 48 1 2.9740 -4.9066 5.9175 49 1 4.4224 -5.7252 5.2837 50 1 2.8465 -7.3273 6.3744 51 1 3.0597 -7.6805 4.6423 52 1 1.3036 -8.8496 8.3012 53 1 -0.1676 -6.1117 3.5914 54 1 1.2968 -6.9316 2.9987 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595614399.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:51 Heat of formation + Delta-G solvation = -27.670131 kcal Electronic energy + Delta-G solvation = -29516.242179 eV Core-core repulsion = 25873.906819 eV Total energy + Delta-G solvation = -3642.335360 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.98751 -40.12298 -38.74230 -35.54775 -35.41818 -33.70076 -33.50956 -31.79011 -31.63548 -28.51053 -27.88413 -26.91092 -26.56941 -24.17395 -23.36108 -23.07031 -22.18298 -21.07301 -20.38481 -19.74872 -18.40951 -17.89154 -17.08104 -16.90792 -16.44315 -16.27001 -16.05434 -15.53982 -15.36879 -15.20380 -14.94731 -14.72986 -14.56339 -14.31506 -14.27568 -14.06485 -13.75267 -13.44670 -13.24347 -13.11962 -12.94408 -12.86496 -12.84813 -12.71177 -12.52342 -12.46392 -12.33265 -12.29469 -11.79966 -11.74263 -11.64110 -11.46857 -11.15067 -11.14211 -10.92606 -10.80550 -10.66071 -10.43850 -10.24342 -9.53810 -9.11378 -8.06109 -6.21106 1.42193 1.43256 1.55071 1.70703 1.97951 2.44582 3.10642 3.20954 3.53628 3.77603 3.82274 3.88250 4.14322 4.16075 4.19777 4.21793 4.27883 4.34687 4.37314 4.47767 4.49430 4.52289 4.56429 4.58533 4.62584 4.67977 4.74016 4.77547 4.81650 4.86632 4.94973 4.98639 5.05488 5.07470 5.11389 5.15780 5.17322 5.19248 5.30960 5.35508 5.37242 5.38587 5.42795 5.50709 5.53252 5.64607 5.79605 5.95164 6.10663 6.19283 6.21054 6.45093 6.51571 6.92387 7.32041 7.47115 8.99158 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.026627 B = 0.002744 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.331086 B =10202.256890 C =10635.272057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.089 4.089 3 H 0.090 0.910 4 C -0.152 4.152 5 C -0.113 4.113 6 C -0.112 4.112 7 C -0.132 4.132 8 C 0.155 3.845 9 H 0.052 0.948 10 N -0.600 5.600 11 C 0.035 3.965 12 C 0.512 3.488 13 O -0.561 6.561 14 C 0.040 3.960 15 N -0.541 5.541 16 C 0.072 3.928 17 C -0.108 4.108 18 C -0.101 4.101 19 C 0.052 3.948 20 H -0.009 1.009 21 C -0.532 4.532 22 H 0.058 0.942 23 C 0.010 3.990 24 N -0.919 5.919 25 Si 0.958 3.042 26 H -0.263 1.263 27 H -0.282 1.282 28 H -0.283 1.283 29 C 0.084 3.916 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.049 0.951 39 H 0.077 0.923 40 H 0.041 0.959 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.129 0.871 44 H 0.116 0.884 45 H 0.075 0.925 46 H 0.026 0.974 47 H 0.077 0.923 48 H 0.039 0.961 49 H 0.063 0.937 50 H 0.056 0.944 51 H 0.027 0.973 52 H 0.259 0.741 53 H 0.066 0.934 54 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.906 16.919 -23.258 28.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.108 4.108 3 H 0.108 0.892 4 C -0.189 4.189 5 C -0.150 4.150 6 C -0.150 4.150 7 C -0.170 4.170 8 C 0.053 3.947 9 H 0.070 0.930 10 N -0.334 5.334 11 C -0.106 4.106 12 C 0.301 3.699 13 O -0.439 6.439 14 C -0.091 4.091 15 N -0.266 5.266 16 C -0.056 4.056 17 C -0.146 4.146 18 C -0.139 4.139 19 C 0.033 3.967 20 H 0.009 0.991 21 C -0.570 4.570 22 H 0.076 0.924 23 C -0.189 4.189 24 N -0.558 5.558 25 Si 0.784 3.216 26 H -0.187 1.187 27 H -0.208 1.208 28 H -0.209 1.209 29 C -0.043 4.043 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.120 0.880 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.147 0.853 44 H 0.134 0.866 45 H 0.093 0.907 46 H 0.044 0.956 47 H 0.096 0.904 48 H 0.058 0.942 49 H 0.082 0.918 50 H 0.075 0.925 51 H 0.046 0.954 52 H 0.068 0.932 53 H 0.084 0.916 54 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.079 17.427 -22.217 28.257 hybrid contribution 0.169 -1.434 0.461 1.516 sum 1.248 15.992 -21.756 27.030 Atomic orbital electron populations 1.22177 0.94126 1.02334 1.03280 1.21346 0.96377 0.99848 0.93225 0.89202 1.22613 0.95559 1.03874 0.96835 1.21490 0.96198 1.00557 0.96768 1.21425 0.99789 0.99098 0.94675 1.21855 0.95477 1.01338 0.98341 1.21005 0.93611 0.81438 0.98696 0.92957 1.47857 1.57477 1.12404 1.15654 1.23077 0.97349 1.01927 0.88202 1.20766 0.78971 0.88094 0.82105 1.90647 1.42894 1.75219 1.35121 1.22050 1.03146 0.91907 0.91976 1.61567 1.09440 1.23768 1.31831 1.22002 0.87671 0.99737 0.96176 1.21534 0.99182 0.97302 0.96562 1.21458 0.97265 0.94209 1.01013 1.18585 0.92789 0.93832 0.91468 0.99093 1.21546 1.32579 1.04157 0.98757 0.92367 1.25795 0.95968 1.01551 0.95545 1.70075 1.42431 1.39541 1.03791 0.85506 0.78231 0.79634 0.78259 1.18650 1.20772 1.20854 1.22027 0.97439 0.86936 0.97911 0.92654 0.89924 0.92054 0.88001 0.89995 0.91841 0.91203 0.92579 0.93199 0.90478 0.94033 0.91205 0.90761 0.85319 0.86575 0.90688 0.95631 0.90439 0.94197 0.91793 0.92510 0.95385 0.93161 0.91567 0.95644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 8.12 71.98 0.58 -1.06 16 2 C -0.09 -1.06 2.46 -10.79 -0.03 -1.09 16 3 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 4 C -0.15 -1.39 4.49 30.59 0.14 -1.26 16 5 C -0.11 -1.29 5.92 30.60 0.18 -1.11 16 6 C -0.11 -1.92 5.77 30.60 0.18 -1.74 16 7 C -0.13 -2.75 5.35 30.60 0.16 -2.58 16 8 C 0.16 3.04 2.19 45.00 0.10 3.14 16 9 H 0.05 1.28 8.09 -2.39 -0.02 1.26 16 10 N -0.60 -12.36 1.92 -824.75 -1.58 -13.94 16 11 C 0.04 0.44 6.71 127.77 0.86 1.29 16 12 C 0.51 15.15 7.09 87.66 0.62 15.77 16 13 O -0.56 -21.71 12.96 -3.04 -0.04 -21.75 16 14 C 0.04 1.15 4.08 85.56 0.35 1.50 16 15 N -0.54 -21.23 4.40 -900.94 -3.96 -25.19 16 16 C 0.07 2.83 5.11 86.33 0.44 3.27 16 17 C -0.11 -4.78 6.09 30.65 0.19 -4.60 16 18 C -0.10 -5.17 5.03 30.67 0.15 -5.02 16 19 C 0.05 2.76 2.26 -11.49 -0.03 2.74 16 20 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 21 C -0.53 -29.87 8.56 25.60 0.22 -29.65 16 22 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 23 C 0.01 0.56 5.30 84.65 0.45 1.00 16 24 N -0.92 -55.14 11.36 21.45 0.24 -54.90 16 25 Si 0.96 44.23 29.54 68.60 2.03 46.25 16 26 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 27 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 28 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 29 C 0.08 3.60 4.68 86.33 0.40 4.00 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 0.51 7.70 -2.39 -0.02 0.49 16 32 H 0.06 0.76 5.53 -2.38 -0.01 0.75 16 33 H 0.10 0.87 3.26 -3.20 -0.01 0.86 16 34 H 0.08 0.50 8.11 -2.39 -0.02 0.48 16 35 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.05 0.96 7.26 -2.39 -0.02 0.94 16 39 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.04 1.18 6.75 -2.38 -0.02 1.16 16 41 H 0.07 0.74 6.93 -2.39 -0.02 0.72 16 42 H 0.07 0.85 6.70 -2.38 -0.02 0.83 16 43 H 0.13 1.10 2.68 -2.38 -0.01 1.10 16 44 H 0.12 2.88 7.26 -2.38 -0.02 2.86 16 45 H 0.08 1.85 8.09 -2.39 -0.02 1.83 16 46 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.08 3.08 5.78 -2.39 -0.01 3.06 16 48 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 49 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 50 H 0.06 3.26 6.16 -2.39 -0.01 3.25 16 51 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 52 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 53 H 0.07 2.70 8.01 -2.39 -0.02 2.68 16 54 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -70.70 382.79 2.51 -68.19 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.86 Total: 16.71 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 4.97 Total: -15.38 kcal Atomic # 7 Polarization: -88.72 SS G_CDS: -5.30 Total: -94.03 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.04 Total: -21.75 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -70.70 2.51 -68.19 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614399.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.518 kcal (2) G-P(sol) polarization free energy of solvation -70.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds