Wall clock time and date at job start Tue Mar 31 2020 15:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47468 * 2 1 4 4 C 1.53008 * 109.47013 * 240.00332 * 2 1 3 5 5 C 1.52997 * 109.47013 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47502 * 59.99907 * 5 4 2 7 7 C 1.52998 * 109.46998 * 300.00096 * 6 5 4 8 8 C 1.52998 * 109.47439 * 59.99683 * 7 6 5 9 9 H 1.09008 * 109.47285 * 59.99793 * 8 7 6 10 10 N 1.46499 * 109.47560 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00028 * 59.99782 * 10 8 7 12 12 C 1.34780 * 120.00226 * 240.00030 * 10 8 7 13 13 O 1.21279 * 119.99449 * 359.97438 * 12 10 8 14 14 C 1.50696 * 119.99997 * 179.97438 * 12 10 8 15 15 N 1.46898 * 109.47009 * 173.73616 * 14 12 10 16 16 C 1.46844 * 111.00437 * 169.39707 * 15 14 12 17 17 C 1.53037 * 109.52919 * 185.83520 * 16 15 14 18 18 C 1.53119 * 109.27712 * 300.82078 * 17 16 15 19 19 C 1.53120 * 109.15888 * 57.65171 * 18 17 16 20 20 H 1.09003 * 109.53449 * 62.30965 * 19 18 17 21 21 C 1.50703 * 109.50075 * 182.40388 * 19 18 17 22 22 H 1.07990 * 120.00070 * 119.80583 * 21 19 18 23 23 C 1.37881 * 119.99785 * 299.80178 * 21 19 18 24 24 N 1.31517 * 120.00129 * 0.02562 * 23 21 19 25 25 Si 1.86796 * 119.99779 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47164 * 90.00272 * 25 23 21 27 27 H 1.48503 * 109.47448 * 210.00165 * 25 23 21 28 28 H 1.48501 * 109.47365 * 330.00502 * 25 23 21 29 29 C 1.46853 * 110.99950 * 293.60515 * 15 14 12 30 30 H 1.08995 * 109.47007 * 299.99923 * 1 2 3 31 31 H 1.09009 * 109.46948 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47179 * 59.99765 * 1 2 3 33 33 H 1.09006 * 109.46638 * 299.99616 * 4 2 1 34 34 H 1.08999 * 109.47227 * 59.99932 * 4 2 1 35 35 H 1.08998 * 109.47311 * 300.00170 * 5 4 2 36 36 H 1.09005 * 109.46924 * 179.97438 * 5 4 2 37 37 H 1.08993 * 109.47392 * 179.97438 * 6 5 4 38 38 H 1.09006 * 109.47411 * 59.99611 * 6 5 4 39 39 H 1.09000 * 109.47307 * 299.99921 * 7 6 5 40 40 H 1.09004 * 109.47619 * 179.97438 * 7 6 5 41 41 H 1.08998 * 109.46872 * 90.00276 * 11 10 8 42 42 H 1.08995 * 109.47239 * 210.00344 * 11 10 8 43 43 H 1.09003 * 109.47004 * 330.00404 * 11 10 8 44 44 H 1.09007 * 109.47067 * 293.73173 * 14 12 10 45 45 H 1.08995 * 109.47268 * 53.73074 * 14 12 10 46 46 H 1.09005 * 109.46223 * 305.85318 * 16 15 14 47 47 H 1.09002 * 109.46231 * 65.81639 * 16 15 14 48 48 H 1.09000 * 109.50590 * 180.87635 * 17 16 15 49 49 H 1.09000 * 109.49724 * 60.75786 * 17 16 15 50 50 H 1.08995 * 109.51964 * 297.74756 * 18 17 16 51 51 H 1.09000 * 109.57245 * 177.58845 * 18 17 16 52 52 H 0.97002 * 119.99700 * 180.02562 * 24 23 21 53 53 H 1.09002 * 109.46028 * 294.17788 * 29 15 14 54 54 H 1.08999 * 109.46054 * 54.14350 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5699 -0.7207 -1.2497 6 6 4.0806 -1.4416 -0.0005 7 6 3.5706 -0.7204 1.2488 8 6 2.0406 -0.7209 1.2492 9 1 1.6776 -1.7488 1.2494 10 7 1.5522 -0.0298 2.4451 11 6 1.9057 1.3730 2.6761 12 6 0.7778 -0.6846 3.3328 13 8 0.4849 -1.8458 3.1413 14 6 0.2760 0.0261 4.5632 15 7 -0.6592 -0.8465 5.2856 16 6 -0.9752 -0.2974 6.6103 17 6 -1.8321 -1.2988 7.3881 18 6 -3.1210 -1.5739 6.6084 19 6 -2.7631 -2.0992 5.2154 20 1 -2.2246 -3.0423 5.3087 21 6 -4.0248 -2.3168 4.4204 22 1 -4.1811 -1.7784 3.4975 23 6 -4.9795 -3.2034 4.8715 24 7 -4.7894 -3.8588 5.9958 25 14 -6.5431 -3.4737 3.8858 26 1 -6.3323 -4.5788 2.9164 27 1 -7.6536 -3.8276 4.8060 28 1 -6.8864 -2.2296 3.1511 29 6 -1.8793 -1.0746 4.5007 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5139 -0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1393 35 1 3.9329 0.3071 -1.2498 36 1 3.9332 -1.2349 -2.1395 37 1 5.1705 -1.4416 -0.0010 38 1 3.7176 -2.4694 -0.0002 39 1 3.9335 0.3074 1.2486 40 1 3.9339 -1.2342 2.1388 41 1 1.1541 2.0169 2.2196 42 1 1.9465 1.5656 3.7481 43 1 2.8796 1.5801 2.2324 44 1 1.1183 0.2708 5.2105 45 1 -0.2352 0.9430 4.2701 46 1 -0.0502 -0.1102 7.1559 47 1 -1.5238 0.6373 6.4946 48 1 -2.0794 -0.8843 8.3654 49 1 -1.2786 -2.2290 7.5161 50 1 -3.6934 -0.6512 6.5139 51 1 -3.7155 -2.3189 7.1371 52 1 -5.4610 -4.4829 6.3129 53 1 -2.4237 -0.1363 4.3948 54 1 -1.6110 -1.4520 3.5139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595614400.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:55 Heat of formation + Delta-G solvation = -72.066325 kcal Electronic energy + Delta-G solvation = -29372.504352 eV Core-core repulsion = 25728.243828 eV Total energy + Delta-G solvation = -3644.260524 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.48038 -39.92102 -38.76422 -35.98737 -35.55423 -33.58338 -33.42570 -31.67628 -31.15675 -28.42706 -27.86426 -26.98252 -26.85022 -24.23262 -23.23975 -22.96519 -22.20789 -20.63813 -20.39006 -20.03285 -18.46011 -17.99744 -17.22904 -16.93085 -16.53881 -16.18371 -15.72606 -15.53179 -15.46566 -15.05469 -14.91087 -14.87501 -14.49410 -14.33627 -14.07068 -13.86628 -13.71921 -13.65440 -13.34031 -13.21609 -13.02871 -12.95487 -12.87349 -12.83354 -12.60581 -12.52611 -12.44909 -12.04822 -11.84163 -11.82366 -11.74978 -11.42405 -11.37973 -11.28038 -11.15380 -10.94754 -10.78994 -10.45050 -10.39188 -9.51056 -9.10883 -8.09764 -6.24225 1.36717 1.38536 1.48584 1.72072 1.99411 2.40592 3.11335 3.16323 3.55280 3.78509 3.78803 3.92305 4.13437 4.16243 4.20909 4.23703 4.26789 4.34416 4.38429 4.44808 4.49035 4.50995 4.53189 4.56797 4.60304 4.70001 4.74664 4.76749 4.82334 4.88537 4.92803 4.97092 4.98961 5.05783 5.10328 5.13199 5.17933 5.21618 5.25308 5.27771 5.33691 5.39651 5.40453 5.49242 5.55090 5.60659 5.72712 5.93206 6.13997 6.18890 6.24600 6.44458 6.53133 6.87847 7.35077 7.42950 8.95288 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.014445 B = 0.003423 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.893244 B = 8178.744495 C = 9451.460502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 H 0.095 0.905 4 C -0.114 4.114 5 C -0.113 4.113 6 C -0.117 4.117 7 C -0.118 4.118 8 C 0.142 3.858 9 H 0.055 0.945 10 N -0.610 5.610 11 C 0.068 3.932 12 C 0.505 3.495 13 O -0.569 6.569 14 C 0.042 3.958 15 N -0.545 5.545 16 C 0.069 3.931 17 C -0.112 4.112 18 C -0.103 4.103 19 C 0.057 3.943 20 H -0.017 1.017 21 C -0.538 4.538 22 H 0.045 0.955 23 C 0.013 3.987 24 N -0.915 5.915 25 Si 0.956 3.044 26 H -0.279 1.279 27 H -0.277 1.277 28 H -0.267 1.267 29 C 0.091 3.909 30 H 0.039 0.961 31 H 0.025 0.975 32 H 0.069 0.931 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.132 0.868 45 H 0.075 0.925 46 H 0.099 0.901 47 H 0.038 0.962 48 H 0.078 0.922 49 H 0.044 0.956 50 H 0.027 0.973 51 H 0.057 0.943 52 H 0.261 0.739 53 H 0.013 0.987 54 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.065 15.881 -9.811 27.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 H 0.113 0.887 4 C -0.152 4.152 5 C -0.150 4.150 6 C -0.156 4.156 7 C -0.156 4.156 8 C 0.038 3.962 9 H 0.074 0.926 10 N -0.343 5.343 11 C -0.073 4.073 12 C 0.293 3.707 13 O -0.447 6.447 14 C -0.088 4.088 15 N -0.270 5.270 16 C -0.058 4.058 17 C -0.149 4.149 18 C -0.142 4.142 19 C 0.038 3.962 20 H 0.001 0.999 21 C -0.576 4.576 22 H 0.063 0.937 23 C -0.186 4.186 24 N -0.555 5.555 25 Si 0.781 3.219 26 H -0.205 1.205 27 H -0.202 1.202 28 H -0.191 1.191 29 C -0.037 4.037 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.105 0.895 43 H 0.114 0.886 44 H 0.150 0.850 45 H 0.092 0.908 46 H 0.117 0.883 47 H 0.056 0.944 48 H 0.097 0.903 49 H 0.062 0.938 50 H 0.046 0.954 51 H 0.075 0.925 52 H 0.070 0.930 53 H 0.031 0.969 54 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 20.052 14.709 -9.706 26.696 hybrid contribution -1.766 -0.249 -0.465 1.843 sum 18.286 14.460 -10.171 25.434 Atomic orbital electron populations 1.21746 0.96411 1.00351 1.01441 1.21395 0.94555 1.00707 0.93957 0.88709 1.21594 0.96651 0.99948 0.96974 1.21528 0.94227 1.01669 0.97624 1.21517 1.01187 0.98766 0.94083 1.21815 0.92928 1.02395 0.98440 1.21112 0.94755 0.96248 0.84038 0.92645 1.47969 1.50566 1.13687 1.22097 1.22070 1.02372 0.79323 1.03576 1.21088 0.77921 0.86723 0.84959 1.90724 1.57814 1.19308 1.76811 1.22065 0.98376 0.94237 0.94123 1.61560 1.14329 1.47285 1.03799 1.22088 0.99784 0.95395 0.88577 1.21594 0.96132 0.98848 0.98357 1.21455 0.96320 0.98698 0.97697 1.18512 0.92238 0.92367 0.93102 0.99885 1.21493 1.04238 1.24410 1.07496 0.93711 1.25749 1.01466 0.95259 0.96087 1.70049 1.35926 1.27487 1.21989 0.85600 0.79193 0.78523 0.78607 1.20473 1.20171 1.19142 1.21887 0.88658 0.96849 0.96300 0.94136 0.95620 0.91189 0.93683 0.90396 0.90198 0.90991 0.90019 0.93568 0.89171 0.92980 0.91890 0.89485 0.88601 0.85002 0.90771 0.88278 0.94429 0.90340 0.93756 0.95385 0.92473 0.92996 0.96908 0.93719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 9.04 71.98 0.65 -2.78 16 2 C -0.09 -1.62 2.11 -10.79 -0.02 -1.64 16 3 H 0.09 1.32 7.67 -2.39 -0.02 1.30 16 4 C -0.11 -1.85 5.20 30.60 0.16 -1.69 16 5 C -0.11 -1.38 5.92 30.59 0.18 -1.20 16 6 C -0.12 -1.72 5.92 30.59 0.18 -1.54 16 7 C -0.12 -1.95 5.18 30.59 0.16 -1.80 16 8 C 0.14 3.25 1.97 44.99 0.09 3.34 16 9 H 0.06 1.80 6.90 -2.38 -0.02 1.79 16 10 N -0.61 -14.14 2.00 -822.59 -1.64 -15.78 16 11 C 0.07 0.87 9.18 127.77 1.17 2.04 16 12 C 0.50 16.65 7.21 87.66 0.63 17.28 16 13 O -0.57 -25.92 14.04 -3.03 -0.04 -25.96 16 14 C 0.04 1.21 3.91 85.56 0.33 1.55 16 15 N -0.54 -21.30 4.35 -900.93 -3.92 -25.21 16 16 C 0.07 2.27 5.46 86.33 0.47 2.74 16 17 C -0.11 -4.44 6.09 30.65 0.19 -4.26 16 18 C -0.10 -5.26 5.03 30.67 0.15 -5.11 16 19 C 0.06 3.21 2.26 -11.49 -0.03 3.18 16 20 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 21 C -0.54 -32.67 8.56 25.60 0.22 -32.46 16 22 H 0.04 2.69 7.74 -2.92 -0.02 2.67 16 23 C 0.01 0.77 5.30 84.66 0.45 1.22 16 24 N -0.92 -56.45 11.36 21.45 0.24 -56.20 16 25 Si 0.96 46.50 29.54 68.60 2.03 48.53 16 26 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 27 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 28 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 29 C 0.09 4.36 4.34 86.32 0.37 4.73 16 30 H 0.04 1.07 7.60 -2.39 -0.02 1.05 16 31 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.07 0.77 8.14 -2.38 -0.02 0.76 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.09 1.03 6.66 -2.39 -0.02 1.02 16 40 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.09 0.86 6.61 -2.39 -0.02 0.84 16 43 H 0.10 0.76 6.43 -2.39 -0.02 0.75 16 44 H 0.13 2.74 7.55 -2.38 -0.02 2.72 16 45 H 0.07 1.82 7.90 -2.39 -0.02 1.80 16 46 H 0.10 2.53 8.01 -2.38 -0.02 2.51 16 47 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 49 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.06 3.27 6.16 -2.39 -0.01 3.25 16 52 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 53 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 54 H 0.04 2.37 6.06 -2.39 -0.01 2.36 16 Total: -1.00 -78.68 399.17 2.87 -75.81 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.83 Total: 15.19 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: 5.36 Total: -16.37 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -5.31 Total: -97.20 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.04 Total: -25.96 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -78.68 2.87 -75.81 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614400.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.746 kcal (2) G-P(sol) polarization free energy of solvation -78.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds