Wall clock time and date at job start Tue Mar 31 2020 15:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46719 * 2 1 4 4 C 1.52993 * 109.47427 * 240.00214 * 2 1 3 5 5 C 1.53005 * 109.47309 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47003 * 59.99680 * 5 4 2 7 7 C 1.53000 * 109.47075 * 300.00333 * 6 5 4 8 8 C 1.52991 * 109.47413 * 59.99964 * 7 6 5 9 9 H 1.09000 * 109.47218 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47137 * 59.99731 * 8 7 6 11 11 C 1.46496 * 120.00248 * 351.23005 * 10 8 7 12 12 C 1.34779 * 120.00296 * 171.22462 * 10 8 7 13 13 O 1.21288 * 119.99757 * 353.19223 * 12 10 8 14 14 C 1.50697 * 120.00210 * 172.91949 * 12 10 8 15 15 N 1.46894 * 109.47201 * 180.27557 * 14 12 10 16 16 C 1.46852 * 111.00115 * 66.04327 * 15 14 12 17 17 C 1.53034 * 109.52305 * 185.83806 * 16 15 14 18 18 C 1.53115 * 109.28112 * 300.81898 * 17 16 15 19 19 C 1.53126 * 109.15955 * 57.65780 * 18 17 16 20 20 H 1.09001 * 109.50415 * 62.32182 * 19 18 17 21 21 C 1.50693 * 109.50281 * 182.40506 * 19 18 17 22 22 H 1.07995 * 120.00265 * 120.00066 * 21 19 18 23 23 C 1.37884 * 120.00298 * 299.99363 * 21 19 18 24 24 N 1.31518 * 119.99336 * 0.02562 * 23 21 19 25 25 Si 1.86794 * 120.00230 * 180.02562 * 23 21 19 26 26 H 1.48492 * 109.47448 * 60.00345 * 25 23 21 27 27 H 1.48507 * 109.46791 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47220 * 299.99967 * 25 23 21 29 29 C 1.46847 * 111.00077 * 190.25456 * 15 14 12 30 30 H 1.08998 * 109.47328 * 291.44333 * 1 2 3 31 31 H 1.08994 * 109.47444 * 51.45550 * 1 2 3 32 32 H 1.09011 * 109.46607 * 171.45287 * 1 2 3 33 33 H 1.09001 * 109.47221 * 59.99764 * 4 2 1 34 34 H 1.08997 * 109.47134 * 299.99381 * 4 2 1 35 35 H 1.08997 * 109.46703 * 299.99872 * 5 4 2 36 36 H 1.09000 * 109.47282 * 179.97438 * 5 4 2 37 37 H 1.09000 * 109.47003 * 180.02562 * 6 5 4 38 38 H 1.08997 * 109.47234 * 60.00518 * 6 5 4 39 39 H 1.09001 * 109.46820 * 299.99565 * 7 6 5 40 40 H 1.09001 * 109.46983 * 180.02562 * 7 6 5 41 41 H 1.09006 * 109.47283 * 269.57628 * 11 10 8 42 42 H 1.09001 * 109.47036 * 29.56651 * 11 10 8 43 43 H 1.08994 * 109.47849 * 149.56751 * 11 10 8 44 44 H 1.09003 * 109.46796 * 300.27444 * 14 12 10 45 45 H 1.09001 * 109.47483 * 60.27430 * 14 12 10 46 46 H 1.08999 * 109.46100 * 305.85640 * 16 15 14 47 47 H 1.09000 * 109.46201 * 65.83334 * 16 15 14 48 48 H 1.09002 * 109.50526 * 60.76241 * 17 16 15 49 49 H 1.09007 * 109.50176 * 180.87999 * 17 16 15 50 50 H 1.09004 * 109.52529 * 177.56027 * 18 17 16 51 51 H 1.08998 * 109.52638 * 297.68936 * 18 17 16 52 52 H 0.97006 * 119.99523 * 179.97438 * 24 23 21 53 53 H 1.09007 * 109.46356 * 294.17382 * 29 15 14 54 54 H 1.08990 * 109.46572 * 54.14613 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5701 -0.7206 -1.2495 6 6 4.0806 -1.4414 -0.0002 7 6 3.5705 -0.7202 1.2490 8 6 2.0405 -0.7208 1.2493 9 1 1.6772 -0.2074 2.1395 10 7 1.5527 -2.1022 1.2495 11 6 2.4911 -3.2104 1.0560 12 6 0.2407 -2.3536 1.4279 13 8 -0.5170 -1.4496 1.7106 14 6 -0.2860 -3.7566 1.2699 15 7 -1.7356 -3.7652 1.5075 16 6 -2.4438 -3.0070 0.4681 17 6 -3.9290 -2.9143 0.8252 18 6 -4.5107 -4.3260 0.9391 19 6 -3.7246 -5.1099 1.9937 20 1 -3.8356 -4.6265 2.9642 21 6 -4.2526 -6.5193 2.0702 22 1 -3.5980 -7.3531 1.8641 23 6 -5.5715 -6.7442 2.4034 24 7 -6.3688 -5.7287 2.6539 25 14 -6.2259 -8.4912 2.4989 26 1 -5.4630 -9.2503 3.5220 27 1 -7.6627 -8.4618 2.8729 28 1 -6.0724 -9.1503 1.1770 29 6 -2.2452 -5.1391 1.6028 30 1 -0.3634 0.3757 0.9565 31 1 -0.3634 0.6403 -0.8037 32 1 -0.3633 -1.0164 -0.1528 33 1 1.6767 -0.2073 -2.1392 34 1 1.6768 -1.7488 -1.2492 35 1 3.9329 0.3072 -1.2497 36 1 3.9335 -1.2348 -2.1392 37 1 5.1706 -1.4406 -0.0002 38 1 3.7177 -2.4692 0.0000 39 1 3.9335 0.3076 1.2488 40 1 3.9345 -1.2335 2.1390 41 1 2.5701 -3.4382 -0.0070 42 1 3.4710 -2.9282 1.4409 43 1 2.1304 -4.0894 1.5901 44 1 -0.0814 -4.1098 0.2592 45 1 0.2040 -4.4120 1.9899 46 1 -2.0232 -2.0037 0.4003 47 1 -2.3318 -3.5133 -0.4906 48 1 -4.0428 -2.3959 1.7773 49 1 -4.4570 -2.3649 0.0457 50 1 -5.5579 -4.2657 1.2357 51 1 -4.4334 -4.8307 -0.0239 52 1 -7.2968 -5.8870 2.8880 53 1 -2.1341 -5.6354 0.6386 54 1 -1.6805 -5.6843 2.3589 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595614401.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:59 Heat of formation + Delta-G solvation = -24.450626 kcal Electronic energy + Delta-G solvation = -29851.237170 eV Core-core repulsion = 26209.041418 eV Total energy + Delta-G solvation = -3642.195752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.01757 -39.96596 -38.61256 -35.69511 -35.43932 -33.69691 -33.43702 -31.67706 -31.34131 -28.45487 -28.28803 -26.89655 -26.47023 -24.05215 -23.30637 -22.88574 -22.28328 -21.10903 -20.38419 -19.61008 -18.41118 -17.92779 -17.51132 -16.90306 -16.46330 -16.14714 -16.00271 -15.46731 -15.28681 -15.13600 -14.96585 -14.76276 -14.35036 -14.31155 -14.20197 -14.03951 -13.79754 -13.46681 -13.20194 -13.10559 -12.88013 -12.80257 -12.75112 -12.68773 -12.58065 -12.51224 -12.39806 -12.07292 -11.81295 -11.73250 -11.54835 -11.44089 -11.12099 -11.06324 -10.93044 -10.79997 -10.66503 -10.43359 -10.19955 -9.34635 -9.09848 -8.05713 -6.20895 1.42981 1.44903 1.52371 1.75690 2.02866 2.44807 3.12459 3.21038 3.62029 3.77575 3.87410 3.91010 4.16043 4.19563 4.23081 4.25625 4.29280 4.35455 4.40296 4.50721 4.52080 4.56866 4.57454 4.61692 4.63984 4.71169 4.77316 4.80502 4.87788 4.89627 4.94358 4.96225 5.00057 5.09113 5.12492 5.17681 5.19429 5.25898 5.34194 5.37880 5.40674 5.44160 5.48869 5.51435 5.61546 5.64711 5.83269 5.96073 6.11420 6.20696 6.22879 6.45789 6.55588 6.92361 7.38676 7.47180 8.99001 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.027567 B = 0.002875 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.454151 B = 9738.124568 C =10213.711539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 H 0.081 0.919 4 C -0.108 4.108 5 C -0.113 4.113 6 C -0.158 4.158 7 C -0.117 4.117 8 C 0.153 3.847 9 H 0.055 0.945 10 N -0.605 5.605 11 C 0.057 3.943 12 C 0.508 3.492 13 O -0.541 6.541 14 C 0.038 3.962 15 N -0.539 5.539 16 C 0.070 3.930 17 C -0.108 4.108 18 C -0.101 4.101 19 C 0.053 3.947 20 H -0.009 1.009 21 C -0.535 4.535 22 H 0.058 0.942 23 C 0.011 3.989 24 N -0.918 5.918 25 Si 0.958 3.042 26 H -0.269 1.269 27 H -0.287 1.287 28 H -0.269 1.269 29 C 0.084 3.916 30 H 0.049 0.951 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.107 0.893 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.114 0.886 46 H 0.084 0.916 47 H 0.022 0.978 48 H 0.040 0.960 49 H 0.062 0.938 50 H 0.056 0.944 51 H 0.026 0.974 52 H 0.259 0.741 53 H 0.024 0.976 54 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.312 8.756 -7.885 27.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.116 4.116 3 H 0.099 0.901 4 C -0.146 4.146 5 C -0.150 4.150 6 C -0.195 4.195 7 C -0.155 4.155 8 C 0.051 3.949 9 H 0.073 0.927 10 N -0.340 5.340 11 C -0.084 4.084 12 C 0.296 3.704 13 O -0.418 6.418 14 C -0.092 4.092 15 N -0.264 5.264 16 C -0.058 4.058 17 C -0.146 4.146 18 C -0.140 4.140 19 C 0.035 3.965 20 H 0.009 0.991 21 C -0.574 4.574 22 H 0.076 0.924 23 C -0.188 4.188 24 N -0.558 5.558 25 Si 0.783 3.217 26 H -0.194 1.194 27 H -0.212 1.212 28 H -0.195 1.195 29 C -0.043 4.043 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.122 0.878 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.126 0.874 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.132 0.868 46 H 0.102 0.898 47 H 0.040 0.960 48 H 0.059 0.941 49 H 0.081 0.919 50 H 0.075 0.925 51 H 0.044 0.956 52 H 0.069 0.931 53 H 0.042 0.958 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 24.662 9.508 -7.234 27.404 hybrid contribution -1.055 -1.030 -0.466 1.547 sum 23.607 8.477 -7.700 26.238 Atomic orbital electron populations 1.22183 0.95846 1.00893 1.00267 1.21536 0.94910 0.99713 0.95411 0.90092 1.21504 0.96723 0.99934 0.96400 1.21485 0.93979 1.01046 0.98538 1.22528 1.01353 1.02423 0.93173 1.21761 0.91489 1.02731 0.99522 1.21053 0.95337 0.81531 0.97026 0.92729 1.47843 1.06426 1.07601 1.72099 1.22570 0.94894 0.88770 1.02149 1.20556 0.82217 0.90602 0.77024 1.90725 1.57668 1.46778 1.46625 1.22068 0.89641 0.94975 1.02556 1.61569 1.02235 1.14761 1.47785 1.22062 0.94216 0.98491 0.90986 1.21531 0.95288 0.97671 1.00082 1.21459 1.01419 0.93583 0.97504 1.18565 0.90273 0.94209 0.93500 0.99069 1.21501 0.95811 0.93037 1.47002 0.92414 1.25791 0.97357 1.00792 0.94849 1.70065 1.05970 1.31939 1.47805 0.85622 0.77037 0.80250 0.78788 1.19441 1.21247 1.19455 1.22019 0.96998 0.86692 0.98614 0.93173 0.94769 0.93699 0.92692 0.92980 0.91984 0.91388 0.90449 0.87838 0.89761 0.90293 0.90746 0.87439 0.90869 0.91048 0.86769 0.89780 0.95968 0.94103 0.91915 0.92513 0.95560 0.93148 0.95824 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 7.34 71.98 0.53 -3.05 16 2 C -0.10 -1.86 2.54 -10.80 -0.03 -1.89 16 3 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 4 C -0.11 -1.75 5.04 30.59 0.15 -1.59 16 5 C -0.11 -1.24 5.92 30.60 0.18 -1.06 16 6 C -0.16 -1.37 5.13 30.59 0.16 -1.22 16 7 C -0.12 -1.30 4.94 30.59 0.15 -1.14 16 8 C 0.15 2.83 2.60 44.99 0.12 2.95 16 9 H 0.05 1.27 7.99 -2.39 -0.02 1.25 16 10 N -0.60 -11.87 2.23 -828.13 -1.85 -13.72 16 11 C 0.06 0.67 7.86 127.77 1.00 1.67 16 12 C 0.51 14.26 5.65 87.66 0.50 14.76 16 13 O -0.54 -19.41 10.05 -3.05 -0.03 -19.44 16 14 C 0.04 1.08 4.17 85.56 0.36 1.44 16 15 N -0.54 -20.76 4.39 -900.94 -3.96 -24.72 16 16 C 0.07 2.71 5.11 86.32 0.44 3.15 16 17 C -0.11 -4.73 6.09 30.64 0.19 -4.55 16 18 C -0.10 -5.17 5.02 30.67 0.15 -5.02 16 19 C 0.05 2.82 2.26 -11.49 -0.03 2.80 16 20 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 21 C -0.53 -30.06 8.56 25.60 0.22 -29.84 16 22 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 23 C 0.01 0.60 5.30 84.66 0.45 1.05 16 24 N -0.92 -55.10 11.35 21.45 0.24 -54.85 16 25 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 26 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 27 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 28 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 29 C 0.08 3.58 4.68 86.33 0.40 3.99 16 30 H 0.05 1.58 6.67 -2.39 -0.02 1.56 16 31 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.04 1.34 4.31 -2.38 -0.01 1.33 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.05 0.95 7.05 -2.39 -0.02 0.93 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.10 0.82 3.09 -4.44 -0.01 0.80 16 39 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 0.75 7.30 -2.39 -0.02 0.73 16 41 H 0.07 0.71 6.46 -2.38 -0.02 0.69 16 42 H 0.11 0.81 4.78 -2.39 -0.01 0.80 16 43 H 0.07 0.81 6.53 -2.39 -0.02 0.80 16 44 H 0.07 1.76 8.12 -2.39 -0.02 1.74 16 45 H 0.11 2.78 7.06 -2.39 -0.02 2.77 16 46 H 0.08 3.21 4.76 -2.39 -0.01 3.20 16 47 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 50 H 0.06 3.26 6.15 -2.38 -0.01 3.24 16 51 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 52 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 53 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 54 H 0.07 2.67 8.01 -2.39 -0.02 2.65 16 Total: -1.00 -69.06 377.28 2.24 -66.82 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.86 Total: 17.25 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 4.95 Total: -17.56 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -5.56 Total: -93.29 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.03 Total: -19.44 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -69.06 2.24 -66.82 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614401.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.369 kcal (2) G-P(sol) polarization free energy of solvation -69.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds