Wall clock time and date at job start Tue Mar 31 2020 15:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47233 * 2 1 4 4 C 1.50707 * 109.47072 * 240.00116 * 2 1 3 5 5 O 1.21280 * 119.99928 * 239.99556 * 4 2 1 6 6 N 1.34775 * 119.99694 * 59.99972 * 4 2 1 7 7 C 1.46501 * 119.99527 * 179.97438 * 6 4 2 8 8 H 1.09004 * 109.47485 * 324.99675 * 7 6 4 9 9 C 1.52999 * 109.47278 * 85.00159 * 7 6 4 10 10 C 1.53003 * 109.46828 * 59.99802 * 9 7 6 11 11 C 1.53001 * 109.47376 * 60.00247 * 10 9 7 12 12 C 1.53001 * 109.46637 * 299.99902 * 11 10 9 13 13 C 1.52994 * 109.47198 * 60.00135 * 12 11 10 14 14 H 1.09000 * 109.47173 * 60.00119 * 13 12 11 15 15 C 1.53000 * 109.47026 * 179.97438 * 13 12 11 16 16 N 1.46906 * 109.47406 * 120.00299 * 2 1 3 17 17 C 1.46843 * 110.99664 * 59.20838 * 16 2 1 18 18 C 1.53040 * 109.52225 * 174.16386 * 17 16 2 19 19 C 1.53117 * 109.27917 * 59.17769 * 18 17 16 20 20 C 1.53117 * 109.15945 * 302.34715 * 19 18 17 21 21 H 1.08995 * 109.50846 * 297.70917 * 20 19 18 22 22 C 1.50704 * 109.53645 * 177.60995 * 20 19 18 23 23 H 1.07995 * 120.00448 * 245.61375 * 22 20 19 24 24 C 1.37877 * 119.99513 * 65.60976 * 22 20 19 25 25 N 1.31519 * 120.00271 * 9.56275 * 24 22 20 26 26 Si 1.86810 * 119.99965 * 189.55750 * 24 22 20 27 27 H 1.48500 * 109.46783 * 94.99373 * 26 24 22 28 28 H 1.48495 * 109.47028 * 214.99182 * 26 24 22 29 29 H 1.48496 * 109.46771 * 334.99305 * 26 24 22 30 30 C 1.46843 * 110.99888 * 295.00192 * 16 2 1 31 31 H 1.08998 * 109.47088 * 60.00387 * 1 2 3 32 32 H 1.09002 * 109.46505 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47117 * 299.99481 * 1 2 3 34 34 H 0.96995 * 120.00240 * 0.02562 * 6 4 2 35 35 H 1.08996 * 109.46910 * 299.99884 * 9 7 6 36 36 H 1.08995 * 109.47669 * 179.97438 * 9 7 6 37 37 H 1.09004 * 109.46810 * 180.02562 * 10 9 7 38 38 H 1.09000 * 109.47054 * 299.99613 * 10 9 7 39 39 H 1.08995 * 109.46690 * 59.99844 * 11 10 9 40 40 H 1.08995 * 109.46590 * 179.97438 * 11 10 9 41 41 H 1.08995 * 109.47534 * 299.99425 * 12 11 10 42 42 H 1.09003 * 109.46366 * 180.02562 * 12 11 10 43 43 H 1.09000 * 109.47448 * 179.97438 * 15 13 12 44 44 H 1.09000 * 109.47588 * 300.00075 * 15 13 12 45 45 H 1.09004 * 109.47082 * 60.00200 * 15 13 12 46 46 H 1.08997 * 109.46955 * 294.17729 * 17 16 2 47 47 H 1.09000 * 109.46476 * 54.14914 * 17 16 2 48 48 H 1.09005 * 109.50268 * 299.23712 * 18 17 16 49 49 H 1.08993 * 109.53738 * 179.14107 * 18 17 16 50 50 H 1.08995 * 109.52383 * 182.44257 * 19 18 17 51 51 H 1.09004 * 109.57537 * 62.28197 * 19 18 17 52 52 H 0.97002 * 119.99897 * 180.02562 * 25 24 22 53 53 H 1.09001 * 109.45875 * 305.85665 * 30 16 2 54 54 H 1.09003 * 109.46225 * 65.81952 * 30 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7067 -0.2499 -2.4546 7 6 2.1955 -0.9402 -3.6507 8 1 3.1949 -1.3320 -3.4613 9 6 1.2520 -2.0944 -3.9949 10 6 -0.1508 -1.5444 -4.2608 11 6 -0.0996 -0.5611 -5.4319 12 6 0.8440 0.5931 -5.0877 13 6 2.2467 0.0431 -4.8218 14 1 2.6104 -0.4704 -5.7119 15 6 3.1904 1.1974 -4.4783 16 7 2.0197 -0.6926 1.1994 17 6 1.5335 -2.0775 1.2427 18 6 2.1777 -2.8090 2.4226 19 6 1.8223 -2.0827 3.7228 20 6 2.2966 -0.6296 3.6324 21 1 3.3810 -0.6067 3.5253 22 6 1.8990 0.1091 4.8844 23 1 1.1809 0.9139 4.8316 24 6 2.4521 -0.2429 6.0974 25 7 3.4586 -1.0883 6.1407 26 14 1.7719 0.4813 7.6794 27 1 0.7763 -0.4530 8.2635 28 1 2.8806 0.6903 8.6449 29 1 1.1180 1.7822 7.3872 30 6 1.6489 0.0387 2.4176 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.1494 0.5390 -2.5435 35 1 1.2155 -2.7949 -3.1606 36 1 1.6153 -2.6077 -4.8851 37 1 -0.8231 -2.3667 -4.5056 38 1 -0.5145 -1.0309 -3.3708 39 1 0.2641 -1.0747 -6.3218 40 1 -1.0990 -0.1697 -5.6216 41 1 0.4804 1.1067 -4.1978 42 1 0.8801 1.2938 -5.9219 43 1 4.1897 0.8056 -4.2884 44 1 3.2269 1.8977 -5.3128 45 1 2.8269 1.7113 -3.5883 46 1 0.4501 -2.0786 1.3626 47 1 1.7964 -2.5840 0.3141 48 1 3.2604 -2.8205 2.2963 49 1 1.8054 -3.8326 2.4640 50 1 2.3146 -2.5750 4.5614 51 1 0.7425 -2.1049 3.8701 52 1 3.8474 -1.3362 6.9941 53 1 1.9956 1.0694 2.3422 54 1 0.5649 0.0278 2.5320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595616680.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:51 Heat of formation + Delta-G solvation = -77.847320 kcal Electronic energy + Delta-G solvation = -29393.539311 eV Core-core repulsion = 25749.028104 eV Total energy + Delta-G solvation = -3644.511207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.64790 -40.14685 -38.69015 -35.86219 -34.77210 -33.97969 -33.40475 -31.67894 -31.22841 -29.95232 -27.19234 -26.89352 -26.10369 -24.03310 -23.31886 -23.11864 -22.31653 -21.31505 -20.06857 -19.96417 -18.50089 -17.97306 -17.18036 -16.54101 -16.42882 -16.22761 -15.86873 -15.54158 -15.42975 -15.16453 -14.98882 -14.71741 -14.57056 -14.29713 -14.25514 -13.93528 -13.68121 -13.42695 -13.32122 -13.10815 -12.94919 -12.83927 -12.81067 -12.72629 -12.60785 -12.47734 -12.38657 -12.26587 -11.84374 -11.77642 -11.63299 -11.38727 -11.37007 -11.20895 -11.03715 -10.89006 -10.71285 -10.43021 -10.29132 -9.90620 -9.03345 -8.10347 -6.19877 1.41770 1.42729 1.53175 1.72553 2.16208 2.44777 3.13852 3.19866 3.66660 3.82809 3.84511 3.88067 4.04566 4.12350 4.20798 4.25985 4.26419 4.32595 4.40356 4.51387 4.56629 4.58072 4.63008 4.65025 4.70995 4.71367 4.74272 4.83452 4.86898 4.88438 4.97757 4.99437 5.08711 5.12670 5.17053 5.17895 5.20411 5.24416 5.31707 5.35429 5.38894 5.41315 5.45183 5.47517 5.55212 5.64962 5.69950 5.95496 6.04739 6.18483 6.27258 6.47885 6.68300 6.94186 7.38932 7.47031 8.98799 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.026379 B = 0.002734 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.187804 B =10238.783565 C =10406.916372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.060 3.940 3 H 0.116 0.884 4 C 0.523 3.477 5 O -0.562 6.562 6 N -0.705 5.705 7 C 0.151 3.849 8 H 0.059 0.941 9 C -0.127 4.127 10 C -0.115 4.115 11 C -0.115 4.115 12 C -0.113 4.113 13 C -0.090 4.090 14 H 0.091 0.909 15 C -0.148 4.148 16 N -0.534 5.534 17 C 0.064 3.936 18 C -0.109 4.109 19 C -0.095 4.095 20 C 0.052 3.948 21 H -0.006 1.006 22 C -0.533 4.533 23 H 0.058 0.942 24 C 0.013 3.987 25 N -0.920 5.920 26 Si 0.953 3.047 27 H -0.277 1.277 28 H -0.286 1.286 29 H -0.263 1.263 30 C 0.084 3.916 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.409 0.591 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.042 0.958 44 H 0.071 0.929 45 H 0.054 0.946 46 H 0.029 0.971 47 H 0.087 0.913 48 H 0.038 0.962 49 H 0.064 0.936 50 H 0.036 0.964 51 H 0.034 0.966 52 H 0.259 0.741 53 H 0.061 0.939 54 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.168 4.227 -26.781 28.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.052 4.052 3 H 0.134 0.866 4 C 0.309 3.691 5 O -0.440 6.440 6 N -0.359 5.359 7 C 0.047 3.953 8 H 0.078 0.922 9 C -0.166 4.166 10 C -0.153 4.153 11 C -0.153 4.153 12 C -0.150 4.150 13 C -0.109 4.109 14 H 0.109 0.891 15 C -0.205 4.205 16 N -0.259 5.259 17 C -0.063 4.063 18 C -0.147 4.147 19 C -0.134 4.134 20 C 0.033 3.967 21 H 0.012 0.988 22 C -0.572 4.572 23 H 0.076 0.924 24 C -0.186 4.186 25 N -0.559 5.559 26 Si 0.779 3.221 27 H -0.203 1.203 28 H -0.212 1.212 29 H -0.187 1.187 30 C -0.043 4.043 31 H 0.113 0.887 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.247 0.753 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.062 0.938 44 H 0.090 0.910 45 H 0.073 0.927 46 H 0.047 0.953 47 H 0.105 0.895 48 H 0.057 0.943 49 H 0.082 0.918 50 H 0.054 0.946 51 H 0.053 0.947 52 H 0.068 0.932 53 H 0.079 0.921 54 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -8.029 3.433 -26.622 28.018 hybrid contribution -0.777 0.244 1.533 1.736 sum -8.807 3.678 -25.089 26.843 Atomic orbital electron populations 1.22332 0.93758 1.02824 1.04284 1.21762 0.95488 0.99125 0.88822 0.86617 1.20623 0.79301 0.84020 0.85151 1.90628 1.38774 1.27779 1.86780 1.45925 1.53515 1.32151 1.04289 1.20947 0.97038 0.92863 0.84472 0.92237 1.21867 0.96480 0.97168 1.01093 1.21477 0.95586 0.99192 0.99028 1.21526 0.99980 0.96085 0.97693 1.21605 0.93283 0.97880 1.02249 1.21370 0.96909 0.95764 0.96811 0.89055 1.21826 0.98590 0.98054 1.02047 1.61809 1.60258 1.02385 1.01401 1.22140 0.95829 0.89122 0.99228 1.21536 0.99688 0.98257 0.95178 1.21409 0.98014 0.98253 0.95683 1.18577 0.94420 0.92153 0.91567 0.98751 1.21497 1.24678 1.17875 0.93101 0.92406 1.25771 0.94571 0.95857 1.02382 1.70142 1.23615 1.36088 1.26074 0.85617 0.78010 0.79040 0.79445 1.20264 1.21244 1.18708 1.22011 0.97079 0.96592 0.88609 0.88733 0.92770 0.91409 0.75266 0.94261 0.90306 0.92020 0.92347 0.91451 0.90995 0.91698 0.90187 0.93838 0.91031 0.92737 0.95291 0.89526 0.94277 0.91751 0.94552 0.94726 0.93165 0.92056 0.95149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.83 8.40 71.98 0.60 -3.23 16 2 C 0.06 1.68 2.77 44.17 0.12 1.80 16 3 H 0.12 2.91 8.08 -2.39 -0.02 2.89 16 4 C 0.52 14.61 6.80 87.66 0.60 15.20 16 5 O -0.56 -20.93 13.57 -3.03 -0.04 -20.97 16 6 N -0.70 -13.19 3.43 -442.52 -1.52 -14.71 16 7 C 0.15 2.70 2.23 44.99 0.10 2.80 16 8 H 0.06 1.42 7.58 -2.38 -0.02 1.40 16 9 C -0.13 -2.19 5.60 30.60 0.17 -2.02 16 10 C -0.12 -1.50 5.77 30.60 0.18 -1.33 16 11 C -0.12 -1.03 5.92 30.60 0.18 -0.85 16 12 C -0.11 -0.94 5.03 30.59 0.15 -0.79 16 13 C -0.09 -1.03 2.51 -10.80 -0.03 -1.06 16 14 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 15 C -0.15 -1.82 9.04 71.98 0.65 -1.17 16 16 N -0.53 -20.53 4.43 -875.50 -3.88 -24.42 16 17 C 0.06 2.47 4.48 86.33 0.39 2.86 16 18 C -0.11 -4.74 6.09 30.65 0.19 -4.56 16 19 C -0.10 -4.79 5.09 30.67 0.16 -4.63 16 20 C 0.05 2.73 2.12 -11.49 -0.02 2.71 16 21 H -0.01 -0.36 8.09 -2.39 -0.02 -0.37 16 22 C -0.53 -29.96 8.48 25.60 0.22 -29.74 16 23 H 0.06 3.12 7.77 -2.91 -0.02 3.10 16 24 C 0.01 0.74 5.22 84.65 0.44 1.18 16 25 N -0.92 -55.87 12.19 21.45 0.26 -55.61 16 26 Si 0.95 44.35 29.55 68.60 2.03 46.38 16 27 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 28 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 29 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 30 C 0.08 3.58 4.25 86.33 0.37 3.94 16 31 H 0.09 1.36 7.56 -2.39 -0.02 1.34 16 32 H 0.05 1.31 6.52 -2.39 -0.02 1.30 16 33 H 0.07 1.61 6.65 -2.39 -0.02 1.59 16 34 H 0.41 5.39 6.07 -92.71 -0.56 4.83 16 35 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.06 0.82 7.60 -2.39 -0.02 0.80 16 39 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.06 0.50 6.51 -2.39 -0.02 0.49 16 42 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.05 0.70 7.45 -2.38 -0.02 0.69 16 46 H 0.03 1.05 6.62 -2.39 -0.02 1.03 16 47 H 0.09 3.40 5.32 -2.39 -0.01 3.38 16 48 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 49 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 50 H 0.04 2.04 6.99 -2.39 -0.02 2.02 16 51 H 0.03 1.67 8.14 -2.38 -0.02 1.65 16 52 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 53 H 0.06 2.54 8.08 -2.39 -0.02 2.52 16 54 H 0.03 1.23 6.73 -2.39 -0.02 1.22 16 Total: -1.00 -70.11 393.93 1.60 -68.51 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.29 Total: 19.69 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: 4.46 Total: -18.88 kcal Atomic # 7 Polarization: -89.59 SS G_CDS: -5.14 Total: -94.74 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.04 Total: -20.97 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -70.11 1.60 -68.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595616680.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.335 kcal (2) G-P(sol) polarization free energy of solvation -70.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds