Wall clock time and date at job start Tue Mar 31 2020 15:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47428 * 2 1 4 4 C 1.50704 * 109.47616 * 120.00156 * 2 1 3 5 5 O 1.21278 * 119.99985 * 91.84398 * 4 2 1 6 6 N 1.34774 * 119.99674 * 271.84871 * 4 2 1 7 7 C 1.46505 * 119.99683 * 179.97438 * 6 4 2 8 8 H 1.08996 * 109.47288 * 324.99661 * 7 6 4 9 9 C 1.52991 * 109.47159 * 85.00015 * 7 6 4 10 10 C 1.53001 * 109.47265 * 59.99929 * 9 7 6 11 11 C 1.53000 * 109.47246 * 59.99822 * 10 9 7 12 12 C 1.52998 * 109.47124 * 300.00519 * 11 10 9 13 13 C 1.52992 * 109.47290 * 59.99504 * 12 11 10 14 14 H 1.09001 * 109.47191 * 60.00415 * 13 12 11 15 15 C 1.53002 * 109.47003 * 179.97438 * 13 12 11 16 16 N 1.46900 * 109.46825 * 240.00093 * 2 1 3 17 17 C 1.46851 * 111.00163 * 310.70386 * 16 2 1 18 18 C 1.53034 * 109.52132 * 174.15972 * 17 16 2 19 19 C 1.53202 * 109.30029 * 59.18374 * 18 17 16 20 20 C 1.53119 * 109.11610 * 302.36623 * 19 18 17 21 21 H 1.08998 * 109.50398 * 297.67263 * 20 19 18 22 22 C 1.50705 * 109.50552 * 177.59440 * 20 19 18 23 23 H 1.07992 * 120.00209 * 240.08074 * 22 20 19 24 24 C 1.37880 * 119.99489 * 60.07554 * 22 20 19 25 25 N 1.31512 * 120.00320 * 0.02562 * 24 22 20 26 26 Si 1.86804 * 119.99652 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47051 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46826 * 120.00419 * 26 24 22 29 29 H 1.48500 * 109.46963 * 240.00232 * 26 24 22 30 30 C 1.46853 * 111.00018 * 186.49457 * 16 2 1 31 31 H 1.08999 * 109.47523 * 60.00074 * 1 2 3 32 32 H 1.08996 * 109.47111 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46736 * 299.99838 * 1 2 3 34 34 H 0.96996 * 120.00111 * 0.02562 * 6 4 2 35 35 H 1.08999 * 109.47344 * 179.97438 * 9 7 6 36 36 H 1.09004 * 109.46954 * 299.99981 * 9 7 6 37 37 H 1.09000 * 109.47536 * 180.02562 * 10 9 7 38 38 H 1.09001 * 109.47194 * 299.99827 * 10 9 7 39 39 H 1.08999 * 109.46945 * 60.00428 * 11 10 9 40 40 H 1.08996 * 109.47003 * 180.02562 * 11 10 9 41 41 H 1.09000 * 109.47307 * 180.02562 * 12 11 10 42 42 H 1.09001 * 109.46665 * 299.99596 * 12 11 10 43 43 H 1.09002 * 109.46915 * 180.02562 * 15 13 12 44 44 H 1.08991 * 109.47572 * 300.00337 * 15 13 12 45 45 H 1.08999 * 109.47113 * 60.00478 * 15 13 12 46 46 H 1.08998 * 109.45860 * 294.17651 * 17 16 2 47 47 H 1.08999 * 109.45790 * 54.14692 * 17 16 2 48 48 H 1.09002 * 109.50354 * 179.11880 * 18 17 16 49 49 H 1.08997 * 109.50806 * 299.20203 * 18 17 16 50 50 H 1.08999 * 109.57621 * 182.45561 * 19 18 17 51 51 H 1.09007 * 109.51475 * 62.23604 * 19 18 17 52 52 H 0.97003 * 120.00050 * 179.97438 * 25 24 22 53 53 H 1.09003 * 109.45799 * 65.82332 * 30 16 2 54 54 H 1.08997 * 109.45887 * 305.85818 * 30 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.2665 -1.8998 1.1909 6 7 2.2216 -0.0241 2.3748 7 6 2.7095 -0.7148 3.5711 8 1 2.3004 -1.7247 3.5998 9 6 4.2374 -0.7844 3.5323 10 6 4.8116 0.6332 3.4921 11 6 4.3674 1.3991 4.7399 12 6 2.8395 1.4686 4.7787 13 6 2.2654 0.0510 4.8189 14 1 2.6283 -0.4629 5.7090 15 6 0.7374 0.1206 4.8584 16 7 2.0196 -0.6925 -1.1995 17 6 1.3520 -1.9897 -1.3676 18 6 1.7773 -2.6150 -2.6981 19 6 3.2984 -2.7976 -2.7084 20 6 3.9680 -1.4392 -2.4827 21 1 3.7093 -0.7656 -3.2996 22 6 5.4636 -1.6177 -2.4323 23 1 6.0115 -1.3363 -1.5452 24 6 6.1324 -2.1403 -3.5189 25 7 5.4653 -2.4826 -4.5994 26 14 7.9864 -2.3609 -3.4568 27 1 8.4955 -1.9026 -2.1393 28 1 8.3207 -3.7956 -3.6444 29 1 8.6165 -1.5604 -4.5372 30 6 3.4793 -0.8479 -1.1585 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.0340 0.9271 2.4065 35 1 4.6004 -1.2979 4.4226 36 1 4.5538 -1.3299 2.6433 37 1 5.9001 0.5837 3.4640 38 1 4.4486 1.1472 2.6020 39 1 4.7305 0.8852 5.6299 40 1 4.7762 2.4091 4.7110 41 1 2.5231 2.0146 5.6674 42 1 2.4765 1.9825 3.8886 43 1 0.3284 -0.8893 4.8875 44 1 0.4213 0.6660 5.7475 45 1 0.3740 0.6346 3.9685 46 1 1.6334 -2.6517 -0.5487 47 1 0.2716 -1.8453 -1.3631 48 1 1.2938 -3.5848 -2.8154 49 1 1.4834 -1.9602 -3.5184 50 1 3.6111 -3.2023 -3.6710 51 1 3.5882 -3.4834 -1.9123 52 1 5.9359 -2.8499 -5.3639 53 1 3.7506 -1.5153 -0.3405 54 1 3.9438 0.1256 -1.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595616681.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:54 Heat of formation + Delta-G solvation = -78.782016 kcal Electronic energy + Delta-G solvation = -29981.398583 eV Core-core repulsion = 26336.846845 eV Total energy + Delta-G solvation = -3644.551738 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.79328 -40.17535 -38.49902 -35.87014 -34.76423 -33.93437 -33.44329 -31.88681 -31.19092 -30.22957 -27.31247 -26.91647 -25.63334 -24.23751 -23.33671 -22.84570 -22.35963 -21.20500 -20.45430 -20.02531 -18.55261 -18.08430 -17.22838 -16.65820 -16.44226 -16.19350 -15.97208 -15.64672 -15.50585 -15.13134 -14.97028 -14.78038 -14.48705 -14.31982 -14.06708 -13.94138 -13.65631 -13.28398 -13.19061 -13.16149 -12.95973 -12.89273 -12.85849 -12.73493 -12.61467 -12.43651 -12.43207 -12.10471 -11.83095 -11.73045 -11.64713 -11.43355 -11.41642 -11.23455 -11.12921 -10.94717 -10.85669 -10.67390 -10.38649 -9.95483 -8.98976 -8.09973 -6.23839 1.36436 1.37592 1.49425 1.67843 2.27833 2.40198 3.03941 3.16366 3.63361 3.79509 3.81424 3.89003 4.02060 4.15110 4.16861 4.20758 4.24141 4.39677 4.46186 4.48099 4.52169 4.53118 4.65547 4.67115 4.68539 4.73119 4.81702 4.83743 4.91572 4.96748 4.99511 5.02263 5.05193 5.10982 5.14834 5.16246 5.18653 5.27418 5.27983 5.31843 5.38213 5.40950 5.43278 5.50184 5.51594 5.60935 5.66957 5.94314 6.07126 6.15985 6.24982 6.43541 6.62651 6.87302 7.34990 7.43290 8.95041 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013484 B = 0.004047 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.069234 B = 6917.550698 C = 8454.830137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.058 3.942 3 H 0.115 0.885 4 C 0.486 3.514 5 O -0.575 6.575 6 N -0.705 5.705 7 C 0.153 3.847 8 H 0.059 0.941 9 C -0.130 4.130 10 C -0.116 4.116 11 C -0.114 4.114 12 C -0.111 4.111 13 C -0.089 4.089 14 H 0.089 0.911 15 C -0.144 4.144 16 N -0.512 5.512 17 C 0.051 3.949 18 C -0.110 4.110 19 C -0.100 4.100 20 C 0.057 3.943 21 H 0.001 0.999 22 C -0.535 4.535 23 H 0.043 0.957 24 C 0.016 3.984 25 N -0.913 5.913 26 Si 0.953 3.047 27 H -0.271 1.271 28 H -0.280 1.280 29 H -0.274 1.274 30 C 0.079 3.921 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.410 0.590 35 H 0.078 0.922 36 H 0.024 0.976 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.044 0.956 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.041 0.959 47 H 0.091 0.909 48 H 0.063 0.937 49 H 0.055 0.945 50 H 0.059 0.941 51 H 0.008 0.992 52 H 0.261 0.739 53 H 0.016 0.984 54 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.188 10.544 20.735 25.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.054 4.054 3 H 0.133 0.867 4 C 0.272 3.728 5 O -0.454 6.454 6 N -0.359 5.359 7 C 0.048 3.952 8 H 0.077 0.923 9 C -0.169 4.169 10 C -0.154 4.154 11 C -0.151 4.151 12 C -0.149 4.149 13 C -0.108 4.108 14 H 0.108 0.892 15 C -0.201 4.201 16 N -0.236 5.236 17 C -0.077 4.077 18 C -0.148 4.148 19 C -0.138 4.138 20 C 0.038 3.962 21 H 0.020 0.980 22 C -0.574 4.574 23 H 0.061 0.939 24 C -0.183 4.183 25 N -0.553 5.553 26 Si 0.779 3.221 27 H -0.196 1.196 28 H -0.206 1.206 29 H -0.199 1.199 30 C -0.049 4.049 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.248 0.752 35 H 0.096 0.904 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.092 0.908 45 H 0.077 0.923 46 H 0.059 0.941 47 H 0.109 0.891 48 H 0.082 0.918 49 H 0.074 0.926 50 H 0.077 0.923 51 H 0.027 0.973 52 H 0.070 0.930 53 H 0.034 0.966 54 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.122 9.925 20.123 25.043 hybrid contribution 1.695 -0.835 0.136 1.895 sum -9.427 9.090 20.259 24.123 Atomic orbital electron populations 1.21836 0.89813 1.02944 1.04526 1.22170 0.99007 0.99121 0.85088 0.86687 1.22390 0.76738 0.87668 0.86017 1.90658 1.52740 1.17571 1.84444 1.46159 1.66702 1.13058 1.09991 1.20893 0.92887 0.96234 0.85210 0.92318 1.21876 0.96056 0.97981 1.00980 1.21467 0.99849 0.94910 0.99175 1.21520 0.96255 1.00361 0.96967 1.21604 0.94752 0.95424 1.03078 1.21368 0.96681 0.96810 0.95931 0.89248 1.21796 0.93898 1.01706 1.02708 1.62471 1.05453 1.21782 1.33851 1.22294 0.98680 0.89864 0.96836 1.21603 0.96193 0.99559 0.97439 1.21431 0.93804 0.98593 1.00003 1.18538 0.93211 0.92705 0.91754 0.98049 1.21485 0.93654 1.42190 1.00062 0.93885 1.25697 1.02545 0.95044 0.95031 1.70036 1.36677 1.43754 1.04817 0.85587 0.80607 0.77815 0.78138 1.19573 1.20590 1.19938 1.21996 0.86480 0.98200 0.98193 0.89626 0.92707 0.89150 0.75242 0.90364 0.95707 0.92796 0.92880 0.91343 0.90920 0.89599 0.91623 0.93676 0.90803 0.92298 0.94119 0.89061 0.91849 0.92593 0.92279 0.97325 0.92980 0.96585 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 8.57 71.98 0.62 -2.13 16 2 C 0.06 1.63 2.95 44.17 0.13 1.76 16 3 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 4 C 0.49 14.75 5.99 87.66 0.52 15.27 16 5 O -0.57 -23.26 12.11 -3.02 -0.04 -23.30 16 6 N -0.71 -15.43 3.54 -442.54 -1.57 -17.00 16 7 C 0.15 3.30 2.23 44.99 0.10 3.40 16 8 H 0.06 1.59 7.58 -2.39 -0.02 1.58 16 9 C -0.13 -3.19 5.60 30.59 0.17 -3.02 16 10 C -0.12 -2.39 5.77 30.59 0.18 -2.21 16 11 C -0.11 -1.53 5.92 30.59 0.18 -1.35 16 12 C -0.11 -1.20 5.03 30.59 0.15 -1.05 16 13 C -0.09 -1.20 2.51 -10.80 -0.03 -1.23 16 14 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 15 C -0.14 -1.70 9.04 71.98 0.65 -1.05 16 16 N -0.51 -19.49 4.73 -875.50 -4.14 -23.63 16 17 C 0.05 1.94 4.62 86.32 0.40 2.34 16 18 C -0.11 -4.72 6.09 30.67 0.19 -4.53 16 19 C -0.10 -5.32 5.03 30.70 0.15 -5.17 16 20 C 0.06 3.12 2.26 -11.49 -0.03 3.09 16 21 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 22 C -0.54 -31.90 8.56 25.60 0.22 -31.68 16 23 H 0.04 2.56 7.74 -2.91 -0.02 2.54 16 24 C 0.02 0.91 5.30 84.66 0.45 1.36 16 25 N -0.91 -55.29 11.36 21.45 0.24 -55.04 16 26 Si 0.95 45.97 29.54 68.60 2.03 47.99 16 27 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 28 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 29 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 30 C 0.08 3.69 4.11 86.32 0.36 4.05 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 1.26 6.19 -2.39 -0.01 1.25 16 33 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.41 6.46 6.65 -92.71 -0.62 5.84 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.05 1.19 7.60 -2.39 -0.02 1.17 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.07 0.67 6.51 -2.39 -0.02 0.65 16 43 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.06 0.68 7.45 -2.39 -0.02 0.66 16 46 H 0.04 1.77 5.67 -2.39 -0.01 1.76 16 47 H 0.09 2.90 5.82 -2.39 -0.01 2.88 16 48 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 49 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 50 H 0.06 3.46 6.16 -2.39 -0.01 3.44 16 51 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 52 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 53 H 0.02 0.82 6.09 -2.39 -0.01 0.81 16 54 H 0.05 2.32 8.12 -2.39 -0.02 2.30 16 Total: -1.00 -72.75 392.34 1.18 -71.57 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.24 Total: 21.54 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 4.42 Total: -22.14 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -5.46 Total: -95.67 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.04 Total: -23.30 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -72.75 1.18 -71.57 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595616681.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.209 kcal (2) G-P(sol) polarization free energy of solvation -72.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds