Wall clock time and date at job start Tue Mar 31 2020 15:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46782 * 2 1 4 4 C 1.50700 * 109.46672 * 119.99865 * 2 1 3 5 5 O 1.21284 * 119.99844 * 92.24517 * 4 2 1 6 6 N 1.34773 * 120.00262 * 272.23499 * 4 2 1 7 7 C 1.46497 * 120.00201 * 180.02562 * 6 4 2 8 8 H 1.09007 * 109.46866 * 325.00145 * 7 6 4 9 9 C 1.53000 * 109.47477 * 85.00222 * 7 6 4 10 10 C 1.53000 * 109.46966 * 59.99926 * 9 7 6 11 11 C 1.53003 * 109.47245 * 60.00272 * 10 9 7 12 12 C 1.53000 * 109.46896 * 300.00319 * 11 10 9 13 13 C 1.52997 * 109.47740 * 59.99615 * 12 11 10 14 14 H 1.08997 * 109.46873 * 59.99528 * 13 12 11 15 15 C 1.52993 * 109.47499 * 180.02562 * 13 12 11 16 16 N 1.46899 * 109.46986 * 240.00262 * 2 1 3 17 17 C 1.46845 * 110.99805 * 187.25463 * 16 2 1 18 18 C 1.53037 * 109.52546 * 185.83951 * 17 16 2 19 19 C 1.53125 * 109.27267 * 300.81648 * 18 17 16 20 20 C 1.53118 * 109.15954 * 57.65425 * 19 18 17 21 21 H 1.09000 * 109.50654 * 62.32840 * 20 19 18 22 22 C 1.50707 * 109.50005 * 182.40285 * 20 19 18 23 23 H 1.07992 * 119.99751 * 114.38584 * 22 20 19 24 24 C 1.37878 * 119.99968 * 294.38600 * 22 20 19 25 25 N 1.31512 * 120.00002 * 163.09805 * 24 22 20 26 26 Si 1.86804 * 120.00154 * 343.37044 * 24 22 20 27 27 H 1.48495 * 109.47210 * 269.72792 * 26 24 22 28 28 H 1.48507 * 109.47027 * 29.72536 * 26 24 22 29 29 H 1.48500 * 109.47450 * 149.72243 * 26 24 22 30 30 C 1.46850 * 110.99895 * 311.45686 * 16 2 1 31 31 H 1.09005 * 109.47107 * 299.99948 * 1 2 3 32 32 H 1.08997 * 109.47490 * 59.99786 * 1 2 3 33 33 H 1.08995 * 109.47360 * 180.02562 * 1 2 3 34 34 H 0.96999 * 119.99977 * 0.02562 * 6 4 2 35 35 H 1.08999 * 109.47318 * 180.02562 * 9 7 6 36 36 H 1.09001 * 109.46489 * 300.00325 * 9 7 6 37 37 H 1.09001 * 109.46749 * 180.02562 * 10 9 7 38 38 H 1.09003 * 109.47314 * 300.00048 * 10 9 7 39 39 H 1.08999 * 109.46678 * 59.99601 * 11 10 9 40 40 H 1.08995 * 109.47033 * 180.02562 * 11 10 9 41 41 H 1.09002 * 109.46810 * 180.02562 * 12 11 10 42 42 H 1.09003 * 109.46695 * 299.99631 * 12 11 10 43 43 H 1.08995 * 109.47277 * 180.02562 * 15 13 12 44 44 H 1.09003 * 109.47255 * 299.99991 * 15 13 12 45 45 H 1.08999 * 109.47058 * 59.99582 * 15 13 12 46 46 H 1.09001 * 109.46875 * 65.81500 * 17 16 2 47 47 H 1.09006 * 109.45055 * 305.84305 * 17 16 2 48 48 H 1.08991 * 109.50527 * 180.87751 * 18 17 16 49 49 H 1.08999 * 109.50285 * 60.75049 * 18 17 16 50 50 H 1.08993 * 109.52283 * 297.74599 * 19 18 17 51 51 H 1.08997 * 109.57135 * 177.58805 * 19 18 17 52 52 H 0.96998 * 119.99669 * 355.86530 * 25 24 22 53 53 H 1.09002 * 109.46226 * 54.14577 * 30 16 2 54 54 H 1.08997 * 109.46245 * 294.18063 * 30 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.2731 -1.8983 1.1890 6 7 2.2139 -0.0257 2.3770 7 6 2.7027 -0.7161 3.5731 8 1 2.2997 -1.7287 3.5982 9 6 4.2311 -0.7762 3.5386 10 6 4.7966 0.6451 3.5033 11 6 4.3441 1.4052 4.7517 12 6 2.8157 1.4651 4.7863 13 6 2.2501 0.0439 4.8215 14 1 2.6138 -0.4699 5.7113 15 6 0.7217 0.1039 4.8553 16 7 2.0197 -0.6924 -1.1995 17 6 3.4772 -0.8638 -1.1500 18 6 3.9680 -1.4545 -2.4737 19 6 3.2844 -2.8043 -2.7091 20 6 1.7662 -2.6057 -2.7079 21 1 1.4850 -1.9445 -3.5276 22 6 1.0843 -3.9386 -2.8801 23 1 0.4829 -4.3448 -2.0804 24 6 1.2283 -4.6394 -4.0587 25 7 0.9288 -5.9192 -4.1036 26 14 1.8560 -3.7729 -5.5900 27 1 0.7073 -3.2230 -6.3536 28 1 2.7635 -2.6657 -5.1953 29 1 2.5964 -4.7411 -6.4383 30 6 1.3393 -1.9816 -1.3775 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 2.0211 0.9244 2.4103 35 1 4.5947 -1.2903 4.4283 36 1 4.5534 -1.3176 2.6492 37 1 5.8855 0.6023 3.4783 38 1 4.4330 1.1588 2.6134 39 1 4.7077 0.8913 5.6416 40 1 4.7466 2.4178 4.7264 41 1 2.4933 2.0070 5.6754 42 1 2.4521 1.9789 3.8963 43 1 0.3189 -0.9086 4.8809 44 1 0.3989 0.6455 5.7445 45 1 0.3585 0.6175 3.9653 46 1 3.7363 -1.5376 -0.3333 47 1 3.9512 0.1041 -0.9864 48 1 5.0479 -1.5960 -2.4309 49 1 3.7215 -0.7746 -3.2892 50 1 3.5619 -3.4966 -1.9143 51 1 3.5980 -3.2096 -3.6711 52 1 0.6642 -6.3840 -3.2944 53 1 0.2605 -1.8257 -1.3789 54 1 1.6083 -2.6502 -0.5598 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595616682.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:58 Heat of formation + Delta-G solvation = -81.011780 kcal Electronic energy + Delta-G solvation = -29905.455485 eV Core-core repulsion = 26260.807057 eV Total energy + Delta-G solvation = -3644.648428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.85351 -40.23976 -38.60737 -35.86228 -34.81644 -34.31643 -33.48301 -32.07246 -31.28268 -30.25677 -27.33946 -26.76457 -25.76251 -24.22599 -23.14575 -22.67426 -22.37983 -21.29559 -20.50218 -20.04646 -19.62916 -18.22384 -17.41120 -16.56712 -16.40274 -16.05580 -15.91331 -15.78660 -15.38631 -15.18796 -15.17627 -14.78682 -14.48102 -14.35708 -14.23253 -14.00811 -13.99558 -13.69691 -13.20945 -13.16302 -13.08517 -12.89835 -12.68621 -12.63690 -12.47718 -12.45365 -12.28055 -12.08946 -11.84683 -11.69807 -11.53708 -11.43576 -11.37264 -11.25349 -11.19500 -11.00204 -10.95616 -10.67920 -10.43001 -9.99401 -9.06674 -8.74008 -6.35000 1.48030 1.54618 1.62310 1.74681 2.22470 2.52585 2.95343 3.07522 3.60866 3.77828 3.79907 3.85244 3.94016 4.06354 4.14637 4.18263 4.20197 4.21740 4.34404 4.45119 4.50024 4.52344 4.54682 4.61958 4.64633 4.67444 4.75459 4.79982 4.84740 4.86774 4.92001 4.93460 5.00139 5.02943 5.08754 5.12712 5.16025 5.19052 5.21375 5.25892 5.30960 5.32029 5.35165 5.41155 5.48860 5.53877 5.64718 5.78527 5.88978 6.03803 6.14178 6.30733 6.58148 6.59943 7.32490 7.42431 8.62848 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.022438 B = 0.003285 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.585108 B = 8522.308152 C = 8831.554909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.063 3.937 3 H 0.137 0.863 4 C 0.484 3.516 5 O -0.579 6.579 6 N -0.702 5.702 7 C 0.150 3.850 8 H 0.048 0.952 9 C -0.128 4.128 10 C -0.113 4.113 11 C -0.115 4.115 12 C -0.111 4.111 13 C -0.090 4.090 14 H 0.087 0.913 15 C -0.146 4.146 16 N -0.509 5.509 17 C 0.054 3.946 18 C -0.110 4.110 19 C -0.115 4.115 20 C 0.027 3.973 21 H 0.032 0.968 22 C -0.600 4.600 23 H 0.005 0.995 24 C -0.022 4.022 25 N -0.943 5.943 26 Si 1.088 2.912 27 H -0.271 1.271 28 H -0.234 1.234 29 H -0.289 1.289 30 C 0.074 3.926 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.034 0.966 34 H 0.412 0.588 35 H 0.074 0.926 36 H 0.031 0.969 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.037 0.963 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.022 0.978 47 H 0.095 0.905 48 H 0.075 0.925 49 H 0.075 0.925 50 H 0.018 0.982 51 H 0.047 0.953 52 H 0.248 0.752 53 H 0.057 0.943 54 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.963 24.304 19.418 31.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.049 4.049 3 H 0.155 0.845 4 C 0.270 3.730 5 O -0.458 6.458 6 N -0.356 5.356 7 C 0.045 3.955 8 H 0.067 0.933 9 C -0.167 4.167 10 C -0.150 4.150 11 C -0.153 4.153 12 C -0.148 4.148 13 C -0.109 4.109 14 H 0.105 0.895 15 C -0.204 4.204 16 N -0.232 5.232 17 C -0.074 4.074 18 C -0.148 4.148 19 C -0.153 4.153 20 C 0.008 3.992 21 H 0.050 0.950 22 C -0.638 4.638 23 H 0.023 0.977 24 C -0.219 4.219 25 N -0.579 5.579 26 Si 0.908 3.092 27 H -0.197 1.197 28 H -0.158 1.158 29 H -0.215 1.215 30 C -0.053 4.053 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.053 0.947 34 H 0.250 0.750 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.092 0.908 45 H 0.077 0.923 46 H 0.040 0.960 47 H 0.113 0.887 48 H 0.094 0.906 49 H 0.094 0.906 50 H 0.037 0.963 51 H 0.066 0.934 52 H 0.057 0.943 53 H 0.076 0.924 54 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 6.334 23.543 17.411 29.959 hybrid contribution -0.587 -1.551 2.483 2.986 sum 5.747 21.992 19.894 30.207 Atomic orbital electron populations 1.21856 0.91415 1.01958 1.04535 1.22161 0.98044 0.99724 0.84993 0.84543 1.22436 0.76773 0.87546 0.86276 1.90724 1.52559 1.17815 1.84702 1.46125 1.66628 1.13232 1.09614 1.20899 0.93633 0.95817 0.85198 0.93344 1.21857 0.95162 0.98471 1.01161 1.21460 1.00154 0.94273 0.99134 1.21533 0.95757 1.00675 0.97319 1.21599 0.95213 0.94866 1.03123 1.21368 0.96242 0.97268 0.96001 0.89512 1.21815 0.94461 1.01369 1.02730 1.62533 1.05331 1.21685 1.33672 1.22159 0.87710 1.00418 0.97095 1.21592 0.99382 0.96162 0.97654 1.21889 0.97692 0.96484 0.99189 1.18968 0.92293 0.93609 0.94355 0.95006 1.22232 1.33345 1.06358 1.01868 0.97694 1.27354 0.94430 0.95058 1.05060 1.70950 1.45740 1.09945 1.31299 0.83592 0.77870 0.75934 0.71770 1.19661 1.15756 1.21504 1.22028 0.97191 0.88797 0.97314 0.88950 0.89591 0.94725 0.74989 0.90746 0.94991 0.92014 0.92081 0.91682 0.90551 0.89935 0.91301 0.94347 0.90779 0.92283 0.95998 0.88702 0.90638 0.90630 0.96335 0.93448 0.94340 0.92426 0.95817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.54 71.98 0.61 -2.75 16 2 C 0.06 1.62 2.97 44.17 0.13 1.76 16 3 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 4 C 0.48 13.88 6.00 87.66 0.53 14.40 16 5 O -0.58 -23.68 12.08 -3.04 -0.04 -23.71 16 6 N -0.70 -13.59 3.54 -442.53 -1.57 -15.15 16 7 C 0.15 2.99 2.23 44.99 0.10 3.09 16 8 H 0.05 1.34 7.58 -2.38 -0.02 1.32 16 9 C -0.13 -2.55 5.60 30.59 0.17 -2.38 16 10 C -0.11 -1.60 5.77 30.60 0.18 -1.42 16 11 C -0.12 -1.09 5.92 30.60 0.18 -0.91 16 12 C -0.11 -0.93 5.03 30.59 0.15 -0.78 16 13 C -0.09 -1.14 2.52 -10.80 -0.03 -1.17 16 14 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 15 C -0.15 -1.86 9.03 71.98 0.65 -1.21 16 16 N -0.51 -17.70 4.73 -875.51 -4.15 -21.84 16 17 C 0.05 1.80 4.87 86.33 0.42 2.23 16 18 C -0.11 -3.94 6.09 30.65 0.19 -3.75 16 19 C -0.11 -5.37 4.71 30.68 0.14 -5.23 16 20 C 0.03 1.39 1.81 -11.49 -0.02 1.37 16 21 H 0.03 1.59 6.72 -2.39 -0.02 1.57 16 22 C -0.60 -37.19 8.83 25.60 0.23 -36.96 16 23 H 0.00 0.32 7.99 -2.91 -0.02 0.30 16 24 C -0.02 -1.39 5.35 84.66 0.45 -0.94 16 25 N -0.94 -63.00 13.70 21.45 0.29 -62.71 16 26 Si 1.09 52.68 26.30 68.60 1.80 54.49 16 27 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 28 H -0.23 -9.99 5.47 99.48 0.54 -9.44 16 29 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 30 C 0.07 3.39 3.83 86.32 0.33 3.72 16 31 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.03 1.08 6.19 -2.39 -0.01 1.07 16 34 H 0.41 5.14 6.65 -92.71 -0.62 4.52 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.03 0.86 8.14 -2.39 -0.02 0.85 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.06 0.88 7.60 -2.39 -0.02 0.87 16 39 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.07 0.49 6.51 -2.39 -0.02 0.47 16 43 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 45 H 0.06 0.72 7.44 -2.39 -0.02 0.70 16 46 H 0.02 0.86 6.02 -2.39 -0.01 0.85 16 47 H 0.09 2.45 8.12 -2.38 -0.02 2.44 16 48 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 49 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 50 H 0.02 0.93 8.14 -2.39 -0.02 0.92 16 51 H 0.05 2.23 5.06 -2.39 -0.01 2.22 16 52 H 0.25 16.96 8.73 -92.71 -0.81 16.15 16 53 H 0.06 2.65 5.82 -2.39 -0.01 2.63 16 54 H 0.02 1.26 5.73 -2.39 -0.01 1.24 16 Total: -1.00 -80.10 387.43 0.81 -79.29 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.04 Total: 20.58 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: 4.42 Total: -30.93 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -5.42 Total: -99.70 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.04 Total: -23.71 kcal Atomic # 14 Polarization: 52.68 SS G_CDS: 1.80 Total: 54.49 kcal Total: -80.10 0.81 -79.29 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595616682.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.725 kcal (2) G-P(sol) polarization free energy of solvation -80.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds