Wall clock time and date at job start Tue Mar 31 2020 13:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46726 * 2 1 4 4 N 1.46504 * 109.46947 * 240.00681 * 2 1 3 5 5 C 1.34778 * 119.99680 * 234.40121 * 4 2 1 6 6 O 1.21278 * 119.99787 * 173.64843 * 5 4 2 7 7 C 1.50703 * 119.99830 * 353.64662 * 5 4 2 8 8 N 1.46906 * 109.46872 * 185.87627 * 7 5 4 9 9 C 1.46849 * 110.99746 * 55.21103 * 8 7 5 10 10 C 1.53037 * 109.52546 * 185.83545 * 9 8 7 11 11 C 1.53122 * 109.27685 * 300.82568 * 10 9 8 12 12 C 1.53121 * 109.16237 * 57.65181 * 11 10 9 13 13 H 1.09003 * 109.50229 * 62.28546 * 12 11 10 14 14 C 1.50698 * 109.50266 * 182.40449 * 12 11 10 15 15 H 1.07999 * 120.00210 * 119.79959 * 14 12 11 16 16 C 1.37875 * 120.00053 * 299.80157 * 14 12 11 17 17 N 1.31515 * 120.00166 * 179.97438 * 16 14 12 18 18 Si 1.86806 * 120.00054 * 0.02562 * 16 14 12 19 19 H 1.48504 * 109.47139 * 89.99651 * 18 16 14 20 20 H 1.48495 * 109.47261 * 210.00064 * 18 16 14 21 21 H 1.48504 * 109.46681 * 330.00006 * 18 16 14 22 22 C 1.46842 * 110.99679 * 179.41909 * 8 7 5 23 23 C 1.46499 * 120.00219 * 54.40192 * 4 2 1 24 24 C 1.54268 * 110.03065 * 237.16575 * 23 4 2 25 25 C 1.54883 * 104.19753 * 217.10523 * 24 23 4 26 26 C 1.54896 * 102.74794 * 37.94260 * 25 24 23 27 27 C 1.53869 * 110.03359 * 119.99937 * 23 4 2 28 28 H 1.08999 * 109.47703 * 53.74733 * 1 2 3 29 29 H 1.09008 * 109.47002 * 173.75015 * 1 2 3 30 30 H 1.09004 * 109.47119 * 293.74769 * 1 2 3 31 31 H 1.08996 * 109.47417 * 120.00312 * 2 1 3 32 32 H 1.08996 * 109.46967 * 63.57999 * 3 2 1 33 33 H 1.09002 * 109.46997 * 183.57642 * 3 2 1 34 34 H 1.08994 * 109.47108 * 303.57749 * 3 2 1 35 35 H 1.08989 * 109.47414 * 305.87866 * 7 5 4 36 36 H 1.09003 * 109.47060 * 65.88225 * 7 5 4 37 37 H 1.08997 * 109.46653 * 305.85613 * 9 8 7 38 38 H 1.09003 * 109.46045 * 65.82053 * 9 8 7 39 39 H 1.08998 * 109.50676 * 180.87968 * 10 9 8 40 40 H 1.09001 * 109.50241 * 60.76272 * 10 9 8 41 41 H 1.09002 * 109.52132 * 297.74249 * 11 10 9 42 42 H 1.09007 * 109.56932 * 177.58737 * 11 10 9 43 43 H 0.97005 * 120.00180 * 179.97438 * 17 16 14 44 44 H 1.09004 * 109.46688 * 294.17920 * 22 8 7 45 45 H 1.08997 * 109.46249 * 54.15369 * 22 8 7 46 46 H 1.09000 * 110.01536 * 358.60387 * 23 4 2 47 47 H 1.09004 * 110.48517 * 335.78521 * 24 23 4 48 48 H 1.09002 * 110.48333 * 98.42581 * 24 23 4 49 49 H 1.09005 * 110.75826 * 279.63380 * 25 24 23 50 50 H 1.08999 * 110.91890 * 156.32888 * 25 24 23 51 51 H 1.09004 * 110.48690 * 203.37979 * 26 25 24 52 52 H 1.08994 * 110.59596 * 80.79269 * 26 25 24 53 53 H 1.08994 * 110.03610 * 238.57067 * 27 23 4 54 54 H 1.09004 * 110.03390 * 0.02562 * 27 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.8835 -1.7169 -1.0759 6 8 3.1985 -2.3621 -2.0533 7 6 3.4594 -2.0626 0.2731 8 7 4.4720 -3.1155 0.1180 9 6 5.5035 -2.7153 -0.8477 10 6 6.4568 -3.8871 -1.0928 11 6 7.1040 -4.2980 0.2327 12 6 6.0064 -4.6635 1.2358 13 1 5.4424 -5.5184 0.8627 14 6 6.6324 -5.0125 2.5615 15 1 6.3847 -4.4399 3.4431 16 6 7.5213 -6.0628 2.6489 17 7 8.0680 -6.3671 3.8057 18 14 7.9504 -7.0528 1.1239 19 1 9.1237 -6.4406 0.4502 20 1 8.2761 -8.4478 1.5148 21 1 6.7922 -7.0567 0.1944 22 6 5.0661 -3.4691 1.4134 23 6 1.5662 -0.2653 -2.5233 24 6 0.9120 -1.4503 -3.2634 25 6 1.3478 -1.2645 -4.7380 26 6 2.8058 -0.7595 -4.6025 27 6 2.7702 0.1739 -3.3747 28 1 -0.3634 0.6077 -0.8287 29 1 -0.3633 -1.0216 -0.1119 30 1 -0.3633 0.4139 0.9407 31 1 1.8933 -0.5138 0.8899 32 1 1.7299 1.9375 0.9203 33 1 3.1280 1.4433 -0.0641 34 1 1.6251 1.9745 -0.8561 35 1 3.9204 -1.1766 0.7093 36 1 2.6634 -2.4178 0.9278 37 1 5.0302 -2.4295 -1.7871 38 1 6.0634 -1.8684 -0.4510 39 1 7.2313 -3.5848 -1.7977 40 1 5.8999 -4.7298 -1.5025 41 1 7.6929 -3.4681 0.6232 42 1 7.7515 -5.1599 0.0711 43 1 8.6932 -7.1063 3.8673 44 1 5.6282 -2.6188 1.7996 45 1 4.2753 -3.7310 2.1163 46 1 0.8554 0.5557 -2.4300 47 1 1.2844 -2.3970 -2.8720 48 1 -0.1735 -1.4014 -3.1773 49 1 0.7255 -0.5194 -5.2338 50 1 1.3156 -2.2121 -5.2757 51 1 3.1024 -0.2064 -5.4937 52 1 3.4857 -1.5933 -4.4283 53 1 2.6435 1.2079 -3.6953 54 1 3.6911 0.0703 -2.8007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595618156.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:57 Heat of formation + Delta-G solvation = -50.479748 kcal Electronic energy + Delta-G solvation = -29752.843509 eV Core-core repulsion = 26109.519049 eV Total energy + Delta-G solvation = -3643.324460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.72411 -39.85285 -38.04911 -37.12995 -35.45342 -33.88491 -32.37398 -31.96649 -29.81992 -29.60757 -27.96735 -27.58590 -26.81303 -24.22836 -23.13575 -22.69920 -21.95530 -21.48427 -20.52723 -19.23213 -18.81536 -18.09933 -17.43525 -16.95764 -16.64056 -16.14021 -15.91388 -15.65533 -15.42738 -15.14569 -14.98371 -14.84644 -14.81547 -14.43755 -14.27022 -13.93024 -13.88168 -13.70479 -13.24043 -13.14995 -12.94561 -12.82483 -12.75284 -12.50545 -12.31572 -12.20957 -12.07036 -11.95917 -11.88530 -11.87410 -11.86512 -11.79201 -11.68504 -11.46069 -11.37313 -11.04698 -10.95269 -10.62720 -10.15281 -9.53543 -9.16773 -8.31180 -6.33663 1.28602 1.35134 1.46425 1.67100 1.95343 2.31969 3.01594 3.04886 3.51091 3.74596 3.81078 3.84143 3.99635 4.08897 4.13461 4.20451 4.21309 4.33710 4.35418 4.39318 4.43263 4.47407 4.59660 4.64696 4.66887 4.68413 4.72937 4.77850 4.81281 4.81568 4.85253 4.92387 4.97238 4.98929 5.04858 5.07255 5.08832 5.16136 5.21089 5.22741 5.27369 5.34093 5.38116 5.39987 5.42385 5.57185 5.61652 5.70384 5.86551 6.13928 6.14001 6.33619 6.52726 6.73014 7.32161 7.32554 8.85327 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.018826 B = 0.003394 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.955183 B = 8248.725562 C = 9149.749184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.119 3.881 3 C -0.158 4.158 4 N -0.601 5.601 5 C 0.515 3.485 6 O -0.536 6.536 7 C 0.036 3.964 8 N -0.536 5.536 9 C 0.055 3.945 10 C -0.110 4.110 11 C -0.120 4.120 12 C 0.020 3.980 13 H 0.021 0.979 14 C -0.515 4.515 15 H 0.040 0.960 16 C 0.018 3.982 17 N -0.947 5.947 18 Si 0.946 3.054 19 H -0.268 1.268 20 H -0.297 1.297 21 H -0.255 1.255 22 C 0.090 3.910 23 C 0.149 3.851 24 C -0.135 4.135 25 C -0.113 4.113 26 C -0.118 4.118 27 C -0.124 4.124 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.020 0.980 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.033 0.967 43 H 0.266 0.734 44 H 0.023 0.977 45 H 0.068 0.932 46 H 0.113 0.887 47 H 0.056 0.944 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.056 0.944 51 H 0.069 0.931 52 H 0.044 0.956 53 H 0.083 0.917 54 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.873 19.564 -14.664 30.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.016 3.984 3 C -0.216 4.216 4 N -0.334 5.334 5 C 0.303 3.697 6 O -0.413 6.413 7 C -0.095 4.095 8 N -0.261 5.261 9 C -0.073 4.073 10 C -0.148 4.148 11 C -0.157 4.157 12 C 0.001 3.999 13 H 0.039 0.961 14 C -0.554 4.554 15 H 0.058 0.942 16 C -0.180 4.180 17 N -0.588 5.588 18 Si 0.773 3.227 19 H -0.194 1.194 20 H -0.225 1.225 21 H -0.179 1.179 22 C -0.037 4.037 23 C 0.046 3.954 24 C -0.173 4.173 25 C -0.151 4.151 26 C -0.156 4.156 27 C -0.162 4.162 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.130 0.870 37 H 0.121 0.879 38 H 0.039 0.961 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.051 0.949 43 H 0.075 0.925 44 H 0.042 0.958 45 H 0.086 0.914 46 H 0.131 0.869 47 H 0.075 0.925 48 H 0.091 0.909 49 H 0.102 0.898 50 H 0.075 0.925 51 H 0.088 0.912 52 H 0.063 0.937 53 H 0.102 0.898 54 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -17.838 18.721 -15.261 30.027 hybrid contribution 1.237 -0.321 0.446 1.353 sum -16.602 18.400 -14.815 28.874 Atomic orbital electron populations 1.22128 0.93195 1.02340 1.03734 1.21459 0.95788 0.94084 0.87091 1.22149 1.00946 0.94884 1.03585 1.48295 1.44793 1.32639 1.07693 1.20529 0.78948 0.79659 0.90568 1.90583 1.59445 1.50778 1.40516 1.22102 0.96834 0.94958 0.95606 1.61690 1.14719 1.39633 1.10031 1.22326 0.91963 0.95354 0.97610 1.21551 0.98034 0.98521 0.96655 1.21926 0.98478 0.99357 0.95984 1.19059 0.93002 0.94636 0.93202 0.96131 1.21296 1.24856 1.14663 0.94551 0.94187 1.25742 0.95666 0.98038 0.98516 1.70027 1.31614 1.30696 1.26460 0.85880 0.79587 0.76876 0.80312 1.19441 1.22508 1.17919 1.21822 0.96422 0.96622 0.88844 1.21752 0.95647 0.96960 0.81020 1.22708 0.99788 0.99027 0.95784 1.22353 0.95986 1.00966 0.95816 1.22226 0.97283 0.98600 0.97448 1.22427 0.97561 0.99756 0.96485 0.91299 0.93078 0.89750 0.88969 0.89855 0.93492 0.91477 0.91291 0.87008 0.87941 0.96148 0.90706 0.92763 0.93067 0.94887 0.92539 0.95845 0.91387 0.86936 0.92503 0.90862 0.89826 0.92541 0.91184 0.93709 0.89839 0.93769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 8.98 71.98 0.65 -0.86 16 2 C 0.12 1.52 3.05 44.99 0.14 1.66 16 3 C -0.16 -1.62 9.22 71.98 0.66 -0.96 16 4 N -0.60 -11.03 2.31 -770.04 -1.78 -12.82 16 5 C 0.51 13.35 6.10 87.66 0.53 13.88 16 6 O -0.54 -17.27 9.88 -3.02 -0.03 -17.30 16 7 C 0.04 0.95 3.89 85.56 0.33 1.29 16 8 N -0.54 -19.10 4.55 -900.91 -4.10 -23.20 16 9 C 0.05 1.92 5.02 86.33 0.43 2.35 16 10 C -0.11 -4.16 6.09 30.65 0.19 -3.98 16 11 C -0.12 -5.37 4.74 30.68 0.15 -5.23 16 12 C 0.02 0.99 1.85 -11.49 -0.02 0.97 16 13 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16 14 C -0.52 -29.93 9.14 25.60 0.23 -29.70 16 15 H 0.04 2.51 7.99 -2.91 -0.02 2.49 16 16 C 0.02 1.05 5.45 84.65 0.46 1.51 16 17 N -0.95 -60.13 13.96 21.45 0.30 -59.83 16 18 Si 0.95 47.36 24.36 68.60 1.67 49.03 16 19 H -0.27 -12.83 6.89 99.48 0.69 -12.14 16 20 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 21 H -0.25 -12.34 6.53 99.48 0.65 -11.69 16 22 C 0.09 3.68 4.69 86.33 0.40 4.09 16 23 C 0.15 2.43 2.52 45.71 0.12 2.54 16 24 C -0.13 -2.55 6.06 31.67 0.19 -2.36 16 25 C -0.11 -1.96 6.91 31.89 0.22 -1.74 16 26 C -0.12 -2.31 6.40 31.67 0.20 -2.11 16 27 C -0.12 -2.21 5.84 31.32 0.18 -2.03 16 28 H 0.07 0.54 6.97 -2.39 -0.02 0.52 16 29 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.09 1.23 5.89 -2.39 -0.01 1.21 16 32 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.59 7.54 -2.39 -0.02 0.57 16 35 H 0.07 1.65 7.88 -2.39 -0.02 1.63 16 36 H 0.11 2.68 7.70 -2.39 -0.02 2.66 16 37 H 0.10 3.58 5.03 -2.39 -0.01 3.57 16 38 H 0.02 0.69 8.14 -2.39 -0.02 0.68 16 39 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.03 1.55 3.37 -2.38 -0.01 1.54 16 43 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 44 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.07 2.71 8.12 -2.39 -0.02 2.69 16 46 H 0.11 1.26 6.24 -2.39 -0.01 1.24 16 47 H 0.06 1.51 5.85 -2.39 -0.01 1.50 16 48 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 50 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 51 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 52 H 0.04 1.17 7.44 -2.39 -0.02 1.15 16 53 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 54 H 0.04 1.00 7.27 -2.38 -0.02 0.98 16 Total: -1.00 -70.37 388.32 1.90 -68.47 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.77 Total: 16.31 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 5.07 Total: -20.66 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -5.58 Total: -95.85 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.03 Total: -17.30 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 1.67 Total: 49.03 kcal Total: -70.37 1.90 -68.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595618156.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.989 kcal (2) G-P(sol) polarization free energy of solvation -70.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds