Wall clock time and date at job start Tue Mar 31 2020 13:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47163 * 2 1 4 4 N 1.46500 * 109.47178 * 120.00490 * 2 1 3 5 5 C 1.34774 * 119.99852 * 120.00032 * 4 2 1 6 6 O 1.21285 * 119.99709 * 179.97438 * 5 4 2 7 7 C 1.50700 * 120.00401 * 359.97438 * 5 4 2 8 8 N 1.46898 * 109.47159 * 179.97438 * 7 5 4 9 9 C 1.46848 * 111.00194 * 293.95131 * 8 7 5 10 10 C 1.53038 * 109.52249 * 174.15869 * 9 8 7 11 11 C 1.53117 * 109.27479 * 59.18706 * 10 9 8 12 12 C 1.53122 * 109.16016 * 302.33674 * 11 10 9 13 13 H 1.08999 * 109.50663 * 297.68372 * 12 11 10 14 14 C 1.50695 * 109.50494 * 177.59600 * 12 11 10 15 15 H 1.08004 * 120.00546 * 240.28230 * 14 12 11 16 16 C 1.37885 * 119.99721 * 60.00481 * 14 12 11 17 17 N 1.31514 * 120.00035 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99853 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46986 * 90.00256 * 18 16 14 20 20 H 1.48496 * 109.47029 * 210.00273 * 18 16 14 21 21 H 1.48499 * 109.47352 * 330.00102 * 18 16 14 22 22 C 1.46844 * 110.99819 * 169.74631 * 8 7 5 23 23 C 1.46503 * 119.99729 * 299.99703 * 4 2 1 24 24 C 1.54270 * 110.02867 * 237.16892 * 23 4 2 25 25 C 1.54893 * 104.19138 * 217.10725 * 24 23 4 26 26 C 1.54886 * 102.75115 * 37.94489 * 25 24 23 27 27 C 1.53877 * 110.02784 * 120.00366 * 23 4 2 28 28 H 1.09002 * 109.47239 * 299.99507 * 1 2 3 29 29 H 1.09001 * 109.47406 * 59.99942 * 1 2 3 30 30 H 1.09007 * 109.47067 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47239 * 240.00493 * 2 1 3 32 32 H 1.08992 * 109.47382 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47007 * 300.00302 * 3 2 1 34 34 H 1.09002 * 109.46640 * 60.00126 * 3 2 1 35 35 H 1.09002 * 109.46968 * 59.99813 * 7 5 4 36 36 H 1.09000 * 109.46951 * 300.00165 * 7 5 4 37 37 H 1.09007 * 109.45947 * 54.14734 * 9 8 7 38 38 H 1.09000 * 109.45623 * 294.17448 * 9 8 7 39 39 H 1.08999 * 109.50795 * 299.24342 * 10 9 8 40 40 H 1.09003 * 109.53482 * 179.14040 * 10 9 8 41 41 H 1.09008 * 109.52060 * 182.44338 * 11 10 9 42 42 H 1.08990 * 109.58066 * 62.27978 * 11 10 9 43 43 H 0.97000 * 119.99706 * 179.97438 * 17 16 14 44 44 H 1.08996 * 109.46666 * 65.82154 * 22 8 7 45 45 H 1.09007 * 109.46477 * 305.85308 * 22 8 7 46 46 H 1.08992 * 110.01663 * 358.61244 * 23 4 2 47 47 H 1.09001 * 110.48803 * 335.78336 * 24 23 4 48 48 H 1.08997 * 110.48494 * 98.43534 * 24 23 4 49 49 H 1.08998 * 110.75571 * 279.63184 * 25 24 23 50 50 H 1.08994 * 110.75397 * 156.25925 * 25 24 23 51 51 H 1.08994 * 110.48689 * 203.38161 * 26 25 24 52 52 H 1.08997 * 110.60059 * 80.78893 * 26 25 24 53 53 H 1.09002 * 110.03033 * 238.56591 * 27 23 4 54 54 H 1.08995 * 110.03208 * 359.95107 * 27 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.7932 -1.7865 1.0723 6 8 3.1978 -2.3580 2.0626 7 6 3.1568 -2.3016 -0.2964 8 7 4.0019 -3.4955 -0.1617 9 6 5.2982 -3.1576 0.4400 10 6 6.0919 -4.4403 0.6984 11 6 6.3004 -5.1810 -0.6253 12 6 4.9366 -5.4784 -1.2549 13 1 4.3661 -6.1324 -0.5954 14 6 5.1342 -6.1552 -2.5868 15 1 4.7566 -5.6947 -3.4879 16 6 5.8021 -7.3595 -2.6558 17 7 6.2663 -7.9178 -1.5592 18 14 6.0464 -8.1987 -4.3067 19 1 7.3227 -7.7397 -4.9113 20 1 6.0919 -9.6702 -4.1120 21 1 4.9188 -7.8536 -5.2092 22 6 4.1763 -4.1656 -1.4567 23 6 1.6644 -0.1902 2.5267 24 6 2.9433 0.1106 3.3354 25 6 2.5863 -0.3131 4.7819 26 6 1.7314 -1.5861 4.5641 27 6 0.8939 -1.2691 3.3078 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9562 0.8900 35 1 3.7015 -1.5309 -0.8418 36 1 2.2483 -2.5586 -0.8411 37 1 5.1357 -2.6349 1.3827 38 1 5.8576 -2.5150 -0.2398 39 1 5.5394 -5.0774 1.3890 40 1 7.0603 -4.1887 1.1310 41 1 6.8277 -6.1169 -0.4399 42 1 6.8868 -4.5605 -1.3027 43 1 6.7358 -8.7652 -1.6078 44 1 4.7410 -3.5183 -2.1275 45 1 3.1991 -4.3752 -1.8917 46 1 1.0577 0.7108 2.4372 47 1 3.7795 -0.4795 2.9604 48 1 3.1778 1.1744 3.2965 49 1 2.0042 0.4627 5.2791 50 1 3.4872 -0.5453 5.3497 51 1 1.0817 -1.7606 5.4216 52 1 2.3702 -2.4516 4.3882 53 1 -0.0864 -0.8913 3.5982 54 1 0.7826 -2.1646 2.6966 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595618157.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:01 Heat of formation + Delta-G solvation = -59.755530 kcal Electronic energy + Delta-G solvation = -29574.396899 eV Core-core repulsion = 25930.670212 eV Total energy + Delta-G solvation = -3643.726688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.62754 -39.71632 -37.97191 -37.10362 -35.45424 -33.52230 -32.31293 -31.67198 -29.68028 -29.61309 -27.95913 -27.40931 -26.89662 -23.95849 -23.27035 -22.68713 -21.92150 -21.50316 -20.38469 -19.18858 -18.39282 -18.10060 -17.27552 -16.71697 -16.53661 -16.17255 -16.08175 -15.48947 -15.24493 -15.03673 -14.93736 -14.82069 -14.44894 -14.28497 -14.15881 -13.89174 -13.85249 -13.32807 -13.26839 -13.07131 -12.83574 -12.79182 -12.63604 -12.50897 -12.42326 -12.30641 -12.07072 -11.94875 -11.87619 -11.85484 -11.78714 -11.73590 -11.66170 -11.43502 -11.36514 -10.98459 -10.67396 -10.45580 -10.22175 -9.52605 -9.10159 -8.06302 -6.21443 1.42541 1.43062 1.53583 1.75175 1.98069 2.44193 3.08636 3.20514 3.55368 3.74894 3.82418 3.85608 4.09485 4.14426 4.21454 4.23848 4.27527 4.36070 4.38727 4.44449 4.49531 4.59241 4.61253 4.66054 4.67559 4.73858 4.79189 4.82094 4.85802 4.86596 4.94866 4.99079 5.00047 5.05607 5.07142 5.11449 5.17162 5.19400 5.27572 5.33218 5.37357 5.39419 5.41273 5.50668 5.57278 5.63942 5.86878 5.95463 6.10726 6.20016 6.22383 6.45007 6.56647 6.91701 7.39033 7.46662 8.98580 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.018929 B = 0.003123 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.859699 B = 8962.464310 C = 9738.240686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.118 3.882 3 C -0.156 4.156 4 N -0.602 5.602 5 C 0.513 3.487 6 O -0.540 6.540 7 C 0.037 3.963 8 N -0.538 5.538 9 C 0.073 3.927 10 C -0.107 4.107 11 C -0.101 4.101 12 C 0.053 3.947 13 H -0.009 1.009 14 C -0.534 4.534 15 H 0.057 0.943 16 C 0.011 3.989 17 N -0.918 5.918 18 Si 0.958 3.042 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.265 1.265 22 C 0.084 3.916 23 C 0.150 3.850 24 C -0.132 4.132 25 C -0.113 4.113 26 C -0.118 4.118 27 C -0.123 4.123 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.024 0.976 39 H 0.039 0.961 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.026 0.974 43 H 0.259 0.741 44 H 0.024 0.976 45 H 0.063 0.937 46 H 0.115 0.885 47 H 0.050 0.950 48 H 0.077 0.923 49 H 0.086 0.914 50 H 0.056 0.944 51 H 0.068 0.932 52 H 0.040 0.960 53 H 0.082 0.918 54 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.091 23.354 6.404 27.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.015 3.985 3 C -0.214 4.214 4 N -0.336 5.336 5 C 0.301 3.699 6 O -0.417 6.417 7 C -0.094 4.094 8 N -0.263 5.263 9 C -0.055 4.055 10 C -0.145 4.145 11 C -0.139 4.139 12 C 0.034 3.966 13 H 0.009 0.991 14 C -0.573 4.573 15 H 0.075 0.925 16 C -0.188 4.188 17 N -0.557 5.557 18 Si 0.783 3.217 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.189 1.189 22 C -0.043 4.043 23 C 0.047 3.953 24 C -0.170 4.170 25 C -0.150 4.150 26 C -0.156 4.156 27 C -0.161 4.161 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.128 0.872 37 H 0.098 0.902 38 H 0.042 0.958 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.069 0.931 44 H 0.042 0.958 45 H 0.082 0.918 46 H 0.133 0.867 47 H 0.069 0.931 48 H 0.096 0.904 49 H 0.105 0.895 50 H 0.075 0.925 51 H 0.087 0.913 52 H 0.059 0.941 53 H 0.101 0.899 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.035 22.576 7.287 26.602 hybrid contribution 0.880 -0.719 -1.296 1.724 sum -11.155 21.857 5.991 25.260 Atomic orbital electron populations 1.22137 0.93539 1.02222 1.03614 1.21463 0.95583 0.94308 0.87125 1.22131 1.01079 0.94568 1.03642 1.48312 1.50478 1.27383 1.07413 1.20623 0.78218 0.79956 0.91131 1.90657 1.53362 1.57549 1.40124 1.22072 0.99579 0.92825 0.94916 1.61571 1.15442 1.24349 1.24935 1.22003 0.88376 0.96239 0.98850 1.21522 0.98514 0.96492 0.97949 1.21455 0.99415 0.98802 0.94258 1.18577 0.92202 0.91281 0.94556 0.99093 1.21518 1.36156 1.05716 0.93862 0.92459 1.25788 0.95318 0.97845 0.99815 1.70067 1.38544 1.18227 1.28901 0.85564 0.78684 0.77384 0.80051 1.20102 1.21160 1.18931 1.22018 0.99250 0.95403 0.87633 1.21733 0.95700 0.96836 0.81056 1.22678 0.97822 1.00880 0.95630 1.22361 0.99425 0.97251 0.96000 1.22215 0.98136 0.98075 0.97197 1.22397 0.98958 0.98193 0.96594 0.91522 0.89600 0.93411 0.88971 0.93276 0.89631 0.91475 0.91048 0.87226 0.90174 0.95799 0.94171 0.91814 0.92502 0.95489 0.93149 0.95771 0.91813 0.86736 0.93123 0.90399 0.89520 0.92491 0.91281 0.94130 0.89909 0.94144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.18 71.98 0.66 -1.09 16 2 C 0.12 1.65 3.11 44.99 0.14 1.79 16 3 C -0.16 -1.64 9.18 71.98 0.66 -0.98 16 4 N -0.60 -12.25 2.31 -770.05 -1.78 -14.03 16 5 C 0.51 14.75 6.21 87.66 0.54 15.29 16 6 O -0.54 -19.55 10.36 -3.05 -0.03 -19.58 16 7 C 0.04 1.07 3.76 85.56 0.32 1.39 16 8 N -0.54 -20.99 4.39 -900.91 -3.96 -24.95 16 9 C 0.07 2.83 5.11 86.33 0.44 3.28 16 10 C -0.11 -4.70 6.09 30.65 0.19 -4.51 16 11 C -0.10 -5.16 5.02 30.67 0.15 -5.00 16 12 C 0.05 2.80 2.26 -11.49 -0.03 2.77 16 13 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 14 C -0.53 -30.10 8.56 25.60 0.22 -29.88 16 15 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 16 C 0.01 0.62 5.30 84.66 0.45 1.07 16 17 N -0.92 -55.09 11.35 21.45 0.24 -54.84 16 18 Si 0.96 44.29 29.54 68.60 2.03 46.31 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 22 C 0.08 3.63 4.68 86.33 0.40 4.03 16 23 C 0.15 2.72 2.43 45.72 0.11 2.83 16 24 C -0.13 -2.66 6.07 31.67 0.19 -2.46 16 25 C -0.11 -2.13 6.91 31.89 0.22 -1.91 16 26 C -0.12 -2.69 6.39 31.67 0.20 -2.49 16 27 C -0.12 -2.58 5.80 31.32 0.18 -2.39 16 28 H 0.07 0.64 7.09 -2.39 -0.02 0.63 16 29 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.09 1.32 5.77 -2.39 -0.01 1.31 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.08 0.61 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.61 7.03 -2.39 -0.02 0.59 16 35 H 0.07 1.81 7.76 -2.39 -0.02 1.79 16 36 H 0.11 2.85 7.63 -2.39 -0.02 2.83 16 37 H 0.08 3.10 5.80 -2.38 -0.01 3.09 16 38 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.06 3.27 6.15 -2.38 -0.01 3.25 16 42 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 44 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.06 2.64 8.01 -2.38 -0.02 2.62 16 46 H 0.11 1.43 6.12 -2.39 -0.01 1.41 16 47 H 0.05 1.39 6.05 -2.39 -0.01 1.38 16 48 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.09 1.20 8.14 -2.39 -0.02 1.19 16 50 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 52 H 0.04 1.23 7.32 -2.39 -0.02 1.22 16 53 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 54 H 0.04 1.10 7.15 -2.39 -0.02 1.08 16 Total: -1.00 -68.87 395.44 2.41 -66.46 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.84 Total: 18.88 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 5.06 Total: -18.26 kcal Atomic # 7 Polarization: -88.32 SS G_CDS: -5.49 Total: -93.82 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.03 Total: -19.58 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -68.87 2.41 -66.46 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595618157.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.707 kcal (2) G-P(sol) polarization free energy of solvation -68.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds