Wall clock time and date at job start Tue Mar 31 2020 15:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46772 * 2 1 4 4 N 1.46496 * 109.47065 * 240.00450 * 2 1 3 5 5 C 1.34776 * 120.00404 * 84.99904 * 4 2 1 6 6 O 1.21587 * 119.99604 * 354.92980 * 5 4 2 7 7 N 1.34772 * 120.00397 * 175.20402 * 5 4 2 8 8 C 1.46930 * 120.63132 * 4.75507 * 7 5 4 9 9 C 1.53192 * 108.77698 * 233.58317 * 8 7 5 10 10 C 1.53046 * 109.31190 * 305.36678 * 9 8 7 11 11 C 1.53035 * 109.53837 * 61.35877 * 10 9 8 12 12 H 1.09003 * 109.49458 * 58.62754 * 11 10 9 13 13 C 1.50701 * 109.49447 * 178.68427 * 11 10 9 14 14 H 1.08006 * 120.00112 * 0.02562 * 13 11 10 15 15 C 1.37878 * 119.99868 * 180.02562 * 13 11 10 16 16 N 1.31507 * 120.00351 * 359.97438 * 15 13 11 17 17 Si 1.86808 * 119.99893 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46991 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46952 * 119.99548 * 17 15 13 20 20 H 1.48501 * 109.46901 * 239.99716 * 17 15 13 21 21 C 1.46931 * 120.63333 * 184.46823 * 7 5 4 22 22 C 1.52998 * 109.47132 * 120.00531 * 2 1 3 23 23 H 1.08995 * 109.46807 * 180.02562 * 22 2 1 24 24 C 1.52999 * 109.47415 * 59.99908 * 22 2 1 25 25 C 1.52993 * 109.47177 * 180.02562 * 24 22 2 26 26 C 1.53003 * 109.47444 * 59.99897 * 25 24 22 27 27 C 1.52999 * 109.47017 * 300.00200 * 26 25 24 28 28 H 1.08998 * 109.46659 * 179.97438 * 27 26 25 29 29 C 1.53001 * 109.47046 * 299.99690 * 27 26 25 30 30 C 1.52996 * 109.46891 * 59.99842 * 27 26 25 31 31 H 1.08998 * 109.47449 * 299.99374 * 1 2 3 32 32 H 1.09000 * 109.47194 * 60.00211 * 1 2 3 33 33 H 1.09007 * 109.47040 * 179.97438 * 1 2 3 34 34 H 0.97004 * 120.00203 * 264.99784 * 4 2 1 35 35 H 1.09000 * 109.58616 * 353.37029 * 8 7 5 36 36 H 1.08997 * 109.58928 * 113.65020 * 8 7 5 37 37 H 1.09004 * 109.49423 * 65.31407 * 9 8 7 38 38 H 1.08998 * 109.49722 * 185.37826 * 9 8 7 39 39 H 1.08997 * 109.45992 * 181.38829 * 10 9 8 40 40 H 1.09004 * 109.45299 * 301.34066 * 10 9 8 41 41 H 0.97004 * 120.00303 * 180.02562 * 16 15 13 42 42 H 1.08999 * 109.59006 * 246.20392 * 21 7 5 43 43 H 1.09005 * 109.58153 * 6.63215 * 21 7 5 44 44 H 1.08998 * 109.46901 * 299.99991 * 24 22 2 45 45 H 1.08999 * 109.46978 * 59.99774 * 24 22 2 46 46 H 1.09002 * 109.47488 * 180.02562 * 25 24 22 47 47 H 1.09007 * 109.47080 * 299.99934 * 25 24 22 48 48 H 1.09001 * 109.46298 * 60.00144 * 26 25 24 49 49 H 1.08995 * 109.47032 * 179.97438 * 26 25 24 50 50 H 1.08999 * 109.46929 * 60.00341 * 29 27 26 51 51 H 1.09001 * 109.46642 * 180.02562 * 29 27 26 52 52 H 1.09002 * 109.46818 * 300.00247 * 29 27 26 53 53 H 1.09008 * 109.46878 * 180.02562 * 30 27 26 54 54 H 1.08998 * 109.47346 * 60.00275 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3571 6 8 1.7718 1.1357 -2.4362 7 7 2.6866 -0.6264 -3.4320 8 6 3.0434 -2.0510 -3.3854 9 6 4.5081 -2.2065 -3.8061 10 6 4.7141 -1.5513 -5.1738 11 6 4.3946 -0.0576 -5.0792 12 1 5.0392 0.4056 -4.3321 13 6 4.6288 0.5926 -6.4183 14 1 4.9710 0.0000 -7.2540 15 6 4.4063 1.9441 -6.5768 16 7 3.9892 2.6656 -5.5595 17 14 4.6959 2.7500 -8.2370 18 1 5.1595 1.7278 -9.2093 19 1 3.4293 3.3556 -8.7209 20 1 5.7296 3.8073 -8.1003 21 6 2.9234 0.1208 -4.6747 22 6 2.0400 -0.7214 1.2492 23 1 3.1300 -0.7209 1.2493 24 6 1.5300 -2.1639 1.2491 25 6 2.0395 -2.8849 2.4986 26 6 1.5291 -2.1636 3.7476 27 6 2.0390 -0.7211 3.7477 28 1 1.6750 -0.2072 4.6372 29 6 3.5690 -0.7211 3.7482 30 6 1.5295 -0.0001 2.4982 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2490 -1.6317 -1.1527 35 1 2.9127 -2.4274 -2.3708 36 1 2.4036 -2.6104 -4.0678 37 1 5.1512 -1.7230 -3.0706 38 1 4.7584 -3.2655 -3.8681 39 1 5.7500 -1.6820 -5.4868 40 1 4.0529 -2.0186 -5.9035 41 1 3.8322 3.6163 -5.6711 42 1 2.2758 -0.2648 -5.4621 43 1 2.7136 1.1779 -4.5111 44 1 0.4400 -2.1638 1.2491 45 1 1.8933 -2.6776 0.3591 46 1 1.6766 -3.9128 2.4983 47 1 3.1296 -2.8849 2.4990 48 1 0.4390 -2.1637 3.7471 49 1 1.8917 -2.6776 4.6377 50 1 3.9327 -1.2350 2.8584 51 1 3.9323 0.3066 3.7487 52 1 3.9320 -1.2349 4.6384 53 1 1.8932 1.0276 2.4980 54 1 0.4395 0.0000 2.4978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595649238.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:46 Heat of formation + Delta-G solvation = -77.538604 kcal Electronic energy + Delta-G solvation = -29271.907042 eV Core-core repulsion = 25627.409222 eV Total energy + Delta-G solvation = -3644.497820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.53041 -40.31020 -38.47387 -36.48142 -35.30708 -33.64645 -32.59452 -32.32536 -31.37768 -29.45327 -27.63770 -27.03760 -26.23597 -24.77248 -23.44948 -23.28690 -21.90160 -21.06615 -20.34608 -19.25372 -19.05442 -18.22184 -17.26557 -16.68425 -16.33774 -16.25201 -15.93254 -15.44462 -15.29818 -15.17791 -15.11756 -14.75411 -14.56760 -14.27934 -14.15284 -14.00052 -13.70068 -13.55681 -13.36539 -13.09596 -12.92042 -12.88210 -12.62340 -12.55460 -12.36558 -12.27805 -12.21462 -12.02249 -11.84595 -11.73430 -11.64545 -11.60992 -11.18428 -11.12636 -10.95044 -10.83799 -10.77829 -10.73173 -10.52114 -10.08559 -9.23202 -8.09759 -6.26927 1.39467 1.41005 1.53169 1.82700 2.30511 2.42149 3.06096 3.20582 3.66461 3.77823 3.83096 4.03848 4.12889 4.17751 4.25007 4.30320 4.31630 4.46427 4.49687 4.55650 4.59386 4.60925 4.66701 4.72056 4.74332 4.80646 4.81417 4.85882 4.88708 5.02112 5.02929 5.07490 5.10937 5.19412 5.22066 5.23627 5.27375 5.28916 5.32224 5.36780 5.40183 5.48099 5.51565 5.54338 5.57414 5.66702 5.71023 5.73467 5.90077 5.99050 6.20460 6.37209 6.86504 7.18616 7.43060 7.74281 8.93691 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.020890 B = 0.002928 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.037224 B = 9559.653655 C =10040.613299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.163 3.837 3 H 0.047 0.953 4 N -0.728 5.728 5 C 0.693 3.307 6 O -0.641 6.641 7 N -0.629 5.629 8 C 0.110 3.890 9 C -0.125 4.125 10 C -0.104 4.104 11 C 0.039 3.961 12 H -0.015 1.015 13 C -0.534 4.534 14 H 0.063 0.937 15 C 0.008 3.992 16 N -0.915 5.915 17 Si 0.958 3.042 18 H -0.259 1.259 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.145 3.855 22 C -0.083 4.083 23 H 0.071 0.929 24 C -0.114 4.114 25 C -0.118 4.118 26 C -0.111 4.111 27 C -0.087 4.087 28 H 0.075 0.925 29 C -0.153 4.153 30 C -0.108 4.108 31 H 0.082 0.918 32 H 0.025 0.975 33 H 0.076 0.924 34 H 0.404 0.596 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.049 0.951 38 H 0.105 0.895 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.258 0.742 42 H 0.032 0.968 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.065 0.935 49 H 0.067 0.933 50 H 0.057 0.943 51 H 0.045 0.955 52 H 0.060 0.940 53 H 0.053 0.947 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.037 -15.649 19.635 25.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.058 3.942 3 H 0.065 0.935 4 N -0.388 5.388 5 C 0.394 3.606 6 O -0.523 6.523 7 N -0.365 5.365 8 C -0.012 4.012 9 C -0.163 4.163 10 C -0.142 4.142 11 C 0.020 3.980 12 H 0.003 0.997 13 C -0.573 4.573 14 H 0.081 0.919 15 C -0.191 4.191 16 N -0.554 5.554 17 Si 0.783 3.217 18 H -0.183 1.183 19 H -0.209 1.209 20 H -0.209 1.209 21 C 0.022 3.978 22 C -0.102 4.102 23 H 0.089 0.911 24 C -0.151 4.151 25 C -0.155 4.155 26 C -0.149 4.149 27 C -0.106 4.106 28 H 0.093 0.907 29 C -0.210 4.210 30 C -0.146 4.146 31 H 0.100 0.900 32 H 0.044 0.956 33 H 0.095 0.905 34 H 0.244 0.756 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.123 0.877 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.050 0.950 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.084 0.916 49 H 0.086 0.914 50 H 0.076 0.924 51 H 0.064 0.936 52 H 0.079 0.921 53 H 0.072 0.928 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.334 -14.660 19.626 25.071 hybrid contribution 0.351 1.013 -1.181 1.595 sum -4.983 -13.647 18.445 23.480 Atomic orbital electron populations 1.22215 0.95038 1.02747 1.01495 1.20830 0.94422 0.95577 0.83395 0.93476 1.45279 1.71812 1.13895 1.07844 1.16249 0.78666 0.84257 0.81415 1.90866 1.57666 1.19246 1.84487 1.47682 1.64403 1.11753 1.12650 1.21842 0.96600 0.80168 1.02566 1.21901 0.95639 1.01928 0.96801 1.21500 1.00477 0.95371 0.96857 1.18983 0.91402 0.92970 0.94652 0.99698 1.21560 1.45021 0.93671 0.97048 0.91920 1.25920 0.94784 0.98339 1.00097 1.70116 1.46273 1.06917 1.32067 0.85508 0.77565 0.78507 0.80097 1.18307 1.20934 1.20877 1.21629 0.97684 0.96876 0.81645 1.21355 1.00488 0.96004 0.92308 0.91088 1.21642 1.01531 0.93555 0.98408 1.21550 1.00975 0.99062 0.93941 1.21551 1.00757 0.94604 0.97981 1.21070 0.95666 0.96514 0.97337 0.90695 1.21959 0.95654 1.01361 1.02036 1.21636 1.01337 0.98434 0.93189 0.89963 0.95609 0.90539 0.75568 0.88464 0.90335 0.93229 0.87689 0.92976 0.92432 0.93255 0.94997 0.90937 0.90794 0.92011 0.91027 0.91880 0.91586 0.91402 0.92435 0.93606 0.92116 0.92802 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.83 8.78 71.98 0.63 -3.20 16 2 C 0.16 4.38 2.37 44.99 0.11 4.49 16 3 H 0.05 1.63 7.65 -2.39 -0.02 1.61 16 4 N -0.73 -21.96 4.91 -457.83 -2.25 -24.21 16 5 C 0.69 29.79 8.26 179.06 1.48 31.26 16 6 O -0.64 -34.89 15.44 -3.99 -0.06 -34.95 16 7 N -0.63 -26.17 2.97 -836.06 -2.48 -28.65 16 8 C 0.11 3.18 6.43 86.36 0.56 3.73 16 9 C -0.12 -3.67 6.08 30.67 0.19 -3.48 16 10 C -0.10 -4.06 5.10 30.62 0.16 -3.91 16 11 C 0.04 2.03 2.26 -11.32 -0.03 2.00 16 12 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 13 C -0.53 -30.00 8.56 25.60 0.22 -29.78 16 14 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 15 C 0.01 0.45 5.30 84.66 0.45 0.90 16 16 N -0.91 -57.16 11.41 21.45 0.24 -56.91 16 17 Si 0.96 45.18 29.54 68.60 2.03 47.21 16 18 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 19 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 20 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 21 C 0.14 7.50 5.41 86.51 0.47 7.97 16 22 C -0.08 -1.53 1.91 -10.79 -0.02 -1.55 16 23 H 0.07 1.45 6.43 -2.39 -0.02 1.43 16 24 C -0.11 -1.59 4.68 30.59 0.14 -1.45 16 25 C -0.12 -1.35 5.65 30.59 0.17 -1.18 16 26 C -0.11 -1.22 5.45 30.59 0.17 -1.05 16 27 C -0.09 -1.15 3.19 -10.79 -0.03 -1.18 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 C -0.15 -2.17 8.50 71.98 0.61 -1.55 16 30 C -0.11 -1.75 4.38 30.59 0.13 -1.62 16 31 H 0.08 1.65 6.43 -2.39 -0.02 1.63 16 32 H 0.02 0.81 8.09 -2.39 -0.02 0.79 16 33 H 0.08 1.52 6.43 -2.38 -0.02 1.51 16 34 H 0.40 9.31 4.32 -92.71 -0.40 8.91 16 35 H 0.10 2.04 5.57 -2.39 -0.01 2.02 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 38 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 42 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.07 4.53 5.18 -2.38 -0.01 4.52 16 44 H 0.07 0.99 6.43 -2.39 -0.02 0.97 16 45 H 0.06 0.83 6.51 -2.39 -0.02 0.81 16 46 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.06 0.77 6.43 -2.38 -0.02 0.75 16 48 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 49 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.06 0.87 4.81 -2.39 -0.01 0.86 16 51 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 52 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 53 H 0.05 0.99 8.14 -2.38 -0.02 0.98 16 54 H 0.08 1.12 6.43 -2.39 -0.02 1.11 16 Total: -1.00 -75.46 388.64 3.35 -72.10 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.47 Total: 25.01 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 5.40 Total: 0.40 kcal Atomic # 7 Polarization: -105.29 SS G_CDS: -4.48 Total: -109.78 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -0.06 Total: -34.95 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -75.46 3.35 -72.10 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595649238.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.434 kcal (2) G-P(sol) polarization free energy of solvation -75.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds