Wall clock time and date at job start Tue Mar 31 2020 15:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46981 * 2 1 4 4 N 1.46497 * 109.47431 * 239.99404 * 2 1 3 5 5 C 1.34776 * 119.99898 * 84.99702 * 4 2 1 6 6 O 1.21585 * 119.99938 * 355.02589 * 5 4 2 7 7 N 1.34772 * 120.00180 * 175.01823 * 5 4 2 8 8 C 1.46929 * 120.63001 * 4.94620 * 7 5 4 9 9 C 1.53624 * 108.54381 * 126.36497 * 8 7 5 10 10 C 1.53041 * 109.23996 * 54.85710 * 9 8 7 11 11 C 1.53042 * 109.54082 * 298.51061 * 10 9 8 12 12 H 1.09004 * 109.52338 * 301.40367 * 11 10 9 13 13 C 1.50693 * 109.50014 * 181.31913 * 11 10 9 14 14 H 1.08009 * 119.99987 * 0.15780 * 13 11 10 15 15 C 1.37871 * 120.00198 * 180.16318 * 13 11 10 16 16 N 1.31509 * 120.00194 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00242 * 179.97438 * 15 13 11 18 18 H 1.48509 * 109.46913 * 60.00003 * 17 15 13 19 19 H 1.48501 * 109.47501 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47149 * 300.00552 * 17 15 13 21 21 C 1.46925 * 120.63333 * 185.22546 * 7 5 4 22 22 C 1.53003 * 109.47282 * 119.99370 * 2 1 3 23 23 H 1.08998 * 109.47257 * 180.02562 * 22 2 1 24 24 C 1.52996 * 109.46919 * 60.00009 * 22 2 1 25 25 C 1.53003 * 109.46919 * 180.02562 * 24 22 2 26 26 C 1.52998 * 109.47153 * 60.00709 * 25 24 22 27 27 C 1.53004 * 109.46842 * 299.99468 * 26 25 24 28 28 H 1.09000 * 109.47229 * 180.02562 * 27 26 25 29 29 C 1.52996 * 109.47030 * 300.00373 * 27 26 25 30 30 C 1.53000 * 109.46985 * 60.00000 * 27 26 25 31 31 H 1.08995 * 109.47246 * 60.00472 * 1 2 3 32 32 H 1.09005 * 109.46903 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47125 * 300.00370 * 1 2 3 34 34 H 0.96992 * 120.00214 * 264.99986 * 4 2 1 35 35 H 1.08998 * 109.58800 * 246.20000 * 8 7 5 36 36 H 1.09003 * 109.58432 * 6.62383 * 8 7 5 37 37 H 1.09001 * 109.63443 * 294.86468 * 9 8 7 38 38 H 1.08999 * 109.43419 * 174.73117 * 9 8 7 39 39 H 1.09000 * 109.45951 * 178.49197 * 10 9 8 40 40 H 1.08997 * 109.46000 * 58.53339 * 10 9 8 41 41 H 0.97004 * 120.00895 * 180.02562 * 16 15 13 42 42 H 1.09003 * 109.58836 * 353.37428 * 21 7 5 43 43 H 1.08997 * 109.59004 * 113.65950 * 21 7 5 44 44 H 1.08995 * 109.47368 * 60.00343 * 24 22 2 45 45 H 1.08998 * 109.47443 * 300.00238 * 24 22 2 46 46 H 1.08998 * 109.47261 * 299.99794 * 25 24 22 47 47 H 1.09005 * 109.47033 * 180.02562 * 25 24 22 48 48 H 1.08998 * 109.47784 * 59.99405 * 26 25 24 49 49 H 1.09004 * 109.47590 * 180.02562 * 26 25 24 50 50 H 1.09003 * 109.47621 * 59.99913 * 29 27 26 51 51 H 1.09005 * 109.46903 * 179.97438 * 29 27 26 52 52 H 1.08995 * 109.47252 * 299.99264 * 29 27 26 53 53 H 1.09002 * 109.47460 * 179.97438 * 30 27 26 54 54 H 1.09008 * 109.46915 * 59.99957 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 2.1470 -0.0185 -2.3571 6 8 1.7733 1.1359 -2.4358 7 7 2.6901 -0.6257 -3.4307 8 6 3.0470 -2.0502 -3.3843 9 6 2.3737 -2.7615 -4.5678 10 6 2.7664 -2.0576 -5.8688 11 6 2.2750 -0.6086 -5.8353 12 1 1.1931 -0.5938 -5.7038 13 6 2.6337 0.0742 -7.1299 14 1 3.1575 -0.4713 -7.9011 15 6 2.2935 1.3952 -7.3299 16 7 1.6564 2.0596 -6.3907 17 14 2.7388 2.2419 -8.9344 18 1 2.0923 1.5296 -10.0659 19 1 2.2646 3.6487 -8.9001 20 1 4.2128 2.2199 -9.1132 21 6 2.9421 0.1257 -4.6680 22 6 2.0400 -0.7211 1.2493 23 1 3.1300 -0.7207 1.2496 24 6 1.5300 -2.1636 1.2495 25 6 2.0395 -2.8845 2.4991 26 6 1.5289 -2.1631 3.7479 27 6 2.0389 -0.7205 3.7479 28 1 1.6755 -0.2066 4.6378 29 6 3.5688 -0.7205 3.7485 30 6 1.5295 0.0004 2.4982 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 2.2491 -1.6318 -1.1524 35 1 4.1292 -2.1583 -3.4571 36 1 2.6965 -2.4843 -2.4478 37 1 1.2908 -2.7269 -4.4479 38 1 2.7033 -3.7998 -4.6020 39 1 2.3120 -2.5757 -6.7134 40 1 3.8510 -2.0709 -5.9757 41 1 1.4166 2.9890 -6.5315 42 1 2.5223 1.1277 -4.5789 43 1 4.0159 0.1935 -4.8420 44 1 1.8933 -2.6775 0.3596 45 1 0.4400 -2.1636 1.2494 46 1 3.1295 -2.8845 2.4995 47 1 1.6766 -3.9124 2.4990 48 1 0.4389 -2.1630 3.7475 49 1 1.8922 -2.6764 4.6383 50 1 3.9327 -1.2345 2.8588 51 1 3.9322 0.3072 3.7480 52 1 3.9318 -1.2340 4.6388 53 1 1.8924 1.0282 2.4983 54 1 0.4394 0.0004 2.4977 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595649239.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:50 Heat of formation + Delta-G solvation = -77.386419 kcal Electronic energy + Delta-G solvation = -29217.969344 eV Core-core repulsion = 25573.478124 eV Total energy + Delta-G solvation = -3644.491220 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.52513 -40.30795 -38.47032 -36.47426 -35.30692 -33.65143 -32.58395 -32.31848 -31.37051 -29.45715 -27.62588 -27.03162 -26.23407 -24.77789 -23.44889 -23.28429 -21.89581 -21.04997 -20.36499 -19.24625 -19.04076 -18.21588 -17.26966 -16.64271 -16.37703 -16.24775 -15.90178 -15.46208 -15.31134 -15.18985 -15.07258 -14.74930 -14.48752 -14.28105 -14.24895 -13.91959 -13.74636 -13.53318 -13.40063 -13.09457 -12.88991 -12.84652 -12.65312 -12.54862 -12.35759 -12.27895 -12.23865 -12.01767 -11.85789 -11.73305 -11.63505 -11.61633 -11.17496 -11.12364 -10.93720 -10.83693 -10.77685 -10.73450 -10.50248 -10.08592 -9.22804 -8.08279 -6.26439 1.40759 1.42634 1.51003 1.83816 2.29523 2.42679 3.07269 3.21000 3.66595 3.78008 3.83401 4.04259 4.13610 4.15123 4.26613 4.30567 4.31519 4.46719 4.49920 4.55327 4.59235 4.60913 4.66655 4.71979 4.74180 4.80391 4.81669 4.86412 4.89119 5.02051 5.02714 5.07980 5.11081 5.19813 5.22409 5.23712 5.27725 5.28569 5.32587 5.36975 5.40344 5.47689 5.51936 5.54880 5.57297 5.67691 5.71367 5.73780 5.91105 6.00438 6.20903 6.37842 6.86933 7.19133 7.43529 7.75145 8.94342 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.023426 B = 0.002848 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.945004 B = 9828.428293 C =10468.264722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.164 3.836 3 H 0.052 0.948 4 N -0.728 5.728 5 C 0.692 3.308 6 O -0.640 6.640 7 N -0.629 5.629 8 C 0.111 3.889 9 C -0.125 4.125 10 C -0.104 4.104 11 C 0.039 3.961 12 H -0.018 1.018 13 C -0.537 4.537 14 H 0.063 0.937 15 C 0.008 3.992 16 N -0.914 5.914 17 Si 0.958 3.042 18 H -0.268 1.268 19 H -0.290 1.290 20 H -0.266 1.266 21 C 0.144 3.856 22 C -0.080 4.080 23 H 0.077 0.923 24 C -0.116 4.116 25 C -0.117 4.117 26 C -0.112 4.112 27 C -0.087 4.087 28 H 0.074 0.926 29 C -0.152 4.152 30 C -0.108 4.108 31 H 0.020 0.980 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.404 0.596 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.047 0.953 38 H 0.105 0.895 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.258 0.742 42 H 0.074 0.926 43 H 0.033 0.967 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.069 0.931 48 H 0.063 0.937 49 H 0.068 0.932 50 H 0.058 0.942 51 H 0.047 0.953 52 H 0.059 0.941 53 H 0.056 0.944 54 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.235 -13.683 22.158 26.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.059 3.941 3 H 0.070 0.930 4 N -0.388 5.388 5 C 0.393 3.607 6 O -0.521 6.521 7 N -0.365 5.365 8 C -0.012 4.012 9 C -0.163 4.163 10 C -0.142 4.142 11 C 0.020 3.980 12 H 0.001 0.999 13 C -0.576 4.576 14 H 0.081 0.919 15 C -0.191 4.191 16 N -0.553 5.553 17 Si 0.783 3.217 18 H -0.193 1.193 19 H -0.216 1.216 20 H -0.191 1.191 21 C 0.021 3.979 22 C -0.099 4.099 23 H 0.095 0.905 24 C -0.153 4.153 25 C -0.154 4.154 26 C -0.150 4.150 27 C -0.106 4.106 28 H 0.092 0.908 29 C -0.209 4.209 30 C -0.146 4.146 31 H 0.039 0.961 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.244 0.756 35 H 0.098 0.902 36 H 0.115 0.885 37 H 0.066 0.934 38 H 0.123 0.877 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.051 0.949 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.081 0.919 49 H 0.086 0.914 50 H 0.077 0.923 51 H 0.066 0.934 52 H 0.078 0.922 53 H 0.075 0.925 54 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.921 -12.688 22.148 25.598 hybrid contribution 0.004 0.887 -1.287 1.563 sum 1.925 -11.802 20.861 24.045 Atomic orbital electron populations 1.22233 0.95637 1.02552 1.01320 1.20829 0.94019 0.95812 0.83438 0.92953 1.45284 1.71827 1.13863 1.07840 1.16262 0.78587 0.84409 0.81418 1.90881 1.57366 1.19463 1.84412 1.47678 1.64599 1.11572 1.12647 1.21932 1.00503 0.79206 0.99525 1.21976 0.99934 1.00100 0.94294 1.21501 1.00279 0.95409 0.97024 1.18895 0.93539 0.92762 0.92810 0.99939 1.21500 1.37800 0.96627 1.01636 0.91909 1.25925 0.94811 0.98517 0.99866 1.70112 1.40338 1.10164 1.34663 0.85615 0.78962 0.77143 0.79974 1.19281 1.21574 1.19096 1.21544 0.97105 0.97584 0.81708 1.21348 1.00703 0.95749 0.92142 0.90512 1.21653 1.01388 0.93818 0.98455 1.21543 1.01086 0.98961 0.93845 1.21558 1.00645 0.94774 0.98010 1.21068 0.95868 0.96359 0.97292 0.90774 1.21952 0.95408 1.01473 1.02086 1.21637 1.01216 0.98570 0.93219 0.96051 0.90852 0.89888 0.75582 0.90173 0.88463 0.93401 0.87695 0.93044 0.92324 0.93250 0.90793 0.94861 0.92008 0.91197 0.91580 0.91215 0.91856 0.91373 0.92278 0.93408 0.92171 0.92512 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 8.78 71.98 0.63 -3.50 16 2 C 0.16 4.36 2.37 44.99 0.11 4.46 16 3 H 0.05 1.73 7.65 -2.39 -0.02 1.71 16 4 N -0.73 -21.78 4.91 -457.83 -2.25 -24.02 16 5 C 0.69 29.69 8.26 179.06 1.48 31.17 16 6 O -0.64 -34.96 15.43 -3.98 -0.06 -35.02 16 7 N -0.63 -26.15 2.97 -836.06 -2.48 -28.63 16 8 C 0.11 3.18 6.42 86.51 0.56 3.73 16 9 C -0.12 -3.72 6.10 30.82 0.19 -3.53 16 10 C -0.10 -4.09 5.10 30.62 0.16 -3.94 16 11 C 0.04 2.04 2.25 -11.46 -0.03 2.02 16 12 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 13 C -0.54 -30.25 8.56 25.60 0.22 -30.03 16 14 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 15 C 0.01 0.47 5.30 84.65 0.45 0.92 16 16 N -0.91 -57.37 11.39 21.44 0.24 -57.13 16 17 Si 0.96 45.20 29.54 68.60 2.03 47.22 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 C 0.14 7.44 5.41 86.36 0.47 7.91 16 22 C -0.08 -1.42 1.91 -10.79 -0.02 -1.44 16 23 H 0.08 1.41 6.43 -2.39 -0.02 1.39 16 24 C -0.12 -1.62 4.68 30.59 0.14 -1.48 16 25 C -0.12 -1.31 5.65 30.59 0.17 -1.13 16 26 C -0.11 -1.21 5.45 30.59 0.17 -1.04 16 27 C -0.09 -1.08 3.20 -10.79 -0.03 -1.12 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 C -0.15 -1.92 8.50 71.98 0.61 -1.31 16 30 C -0.11 -1.69 4.38 30.59 0.13 -1.55 16 31 H 0.02 0.72 8.10 -2.39 -0.02 0.70 16 32 H 0.07 1.61 6.43 -2.38 -0.02 1.60 16 33 H 0.08 1.76 6.43 -2.39 -0.02 1.74 16 34 H 0.40 9.22 4.35 -92.71 -0.40 8.81 16 35 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.10 2.04 5.64 -2.39 -0.01 2.03 16 37 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 42 H 0.07 4.62 5.11 -2.39 -0.01 4.61 16 43 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.06 0.83 6.51 -2.39 -0.02 0.82 16 45 H 0.07 1.00 6.43 -2.39 -0.02 0.98 16 46 H 0.07 0.74 6.43 -2.39 -0.02 0.73 16 47 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 48 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 50 H 0.06 0.78 4.81 -2.39 -0.01 0.77 16 51 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 52 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 53 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 54 H 0.07 1.08 6.43 -2.38 -0.02 1.07 16 Total: -1.00 -75.75 388.63 3.35 -72.39 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.47 Total: 25.04 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 5.40 Total: 0.14 kcal Atomic # 7 Polarization: -105.30 SS G_CDS: -4.48 Total: -109.78 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.06 Total: -35.02 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -75.75 3.35 -72.39 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595649239.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.992 kcal (2) G-P(sol) polarization free energy of solvation -75.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds