Wall clock time and date at job start Tue Mar 31 2020 15:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47483 * 2 1 4 4 N 1.46504 * 109.47382 * 239.99892 * 2 1 3 5 5 C 1.34776 * 119.99803 * 84.99501 * 4 2 1 6 6 O 1.21584 * 120.00102 * 5.08378 * 5 4 2 7 7 N 1.34780 * 119.99957 * 185.07822 * 5 4 2 8 8 C 1.46923 * 120.62794 * 354.94273 * 7 5 4 9 9 C 1.53195 * 108.77510 * 126.41347 * 8 7 5 10 10 C 1.53030 * 109.33897 * 54.61575 * 9 8 7 11 11 C 1.53042 * 109.54193 * 298.68391 * 10 9 8 12 12 H 1.08995 * 109.49787 * 301.35115 * 11 10 9 13 13 C 1.50707 * 109.49695 * 181.28210 * 11 10 9 14 14 H 1.07993 * 119.99833 * 0.07446 * 13 11 10 15 15 C 1.37877 * 119.99313 * 179.78776 * 13 11 10 16 16 N 1.31519 * 119.99408 * 180.27797 * 15 13 11 17 17 Si 1.86792 * 120.00570 * 0.28222 * 15 13 11 18 18 H 1.48493 * 109.47392 * 89.99306 * 17 15 13 19 19 H 1.48502 * 109.47243 * 209.99668 * 17 15 13 20 20 H 1.48505 * 109.47028 * 329.99583 * 17 15 13 21 21 C 1.46926 * 120.63073 * 174.96147 * 7 5 4 22 22 C 1.52998 * 109.47204 * 119.99738 * 2 1 3 23 23 H 1.09006 * 109.47163 * 60.00545 * 22 2 1 24 24 C 1.53008 * 109.47225 * 180.02562 * 22 2 1 25 25 C 1.52994 * 109.46904 * 180.02562 * 24 22 2 26 26 C 1.52999 * 109.47459 * 299.99773 * 25 24 22 27 27 C 1.52998 * 109.47008 * 60.00155 * 26 25 24 28 28 H 1.08995 * 109.47076 * 60.00212 * 27 26 25 29 29 C 1.52999 * 109.47379 * 179.97438 * 27 26 25 30 30 C 1.52998 * 109.47204 * 300.00344 * 27 26 25 31 31 H 1.09006 * 109.46615 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47063 * 299.99801 * 1 2 3 33 33 H 1.09000 * 109.47087 * 60.00474 * 1 2 3 34 34 H 0.96996 * 119.99830 * 265.00408 * 4 2 1 35 35 H 1.08998 * 109.59058 * 246.19704 * 8 7 5 36 36 H 1.08998 * 109.58875 * 6.48010 * 8 7 5 37 37 H 1.08999 * 109.49657 * 174.58779 * 9 8 7 38 38 H 1.09004 * 109.49601 * 294.64607 * 9 8 7 39 39 H 1.09000 * 109.48790 * 178.64861 * 10 9 8 40 40 H 1.09003 * 109.43286 * 58.69250 * 10 9 8 41 41 H 0.97001 * 119.99784 * 180.02562 * 16 15 13 42 42 H 1.09004 * 109.57926 * 113.80270 * 21 7 5 43 43 H 1.08993 * 109.70235 * 353.44922 * 21 7 5 44 44 H 1.09006 * 109.47021 * 299.99789 * 24 22 2 45 45 H 1.08995 * 109.47186 * 60.00052 * 24 22 2 46 46 H 1.09009 * 109.47132 * 179.97438 * 25 24 22 47 47 H 1.09002 * 109.47649 * 59.99958 * 25 24 22 48 48 H 1.08995 * 109.47029 * 300.00339 * 26 25 24 49 49 H 1.08998 * 109.47140 * 180.02562 * 26 25 24 50 50 H 1.08999 * 109.47473 * 179.97438 * 29 27 26 51 51 H 1.08998 * 109.47000 * 300.00341 * 29 27 26 52 52 H 1.09008 * 109.46513 * 59.99998 * 29 27 26 53 53 H 1.09002 * 109.47368 * 299.99919 * 30 27 26 54 54 H 1.08999 * 109.47423 * 180.02562 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.9467 1.1805 -2.3909 7 7 2.4978 -0.6748 -3.4808 8 6 2.8506 -2.1003 -3.4356 9 6 1.9894 -2.8539 -4.4542 10 6 2.1537 -2.2091 -5.8323 11 6 1.6775 -0.7556 -5.7774 12 1 0.6340 -0.7263 -5.4638 13 6 1.8102 -0.1310 -7.1425 14 1 2.1946 -0.7126 -7.9674 15 6 1.4354 1.1811 -7.3395 16 7 1.5462 1.7246 -8.5320 17 14 0.7706 2.1869 -5.9128 18 1 1.8939 2.8712 -5.2236 19 1 -0.1867 3.2001 -6.4251 20 1 0.0759 1.2890 -4.9555 21 6 2.5351 0.0216 -4.7740 22 6 2.0400 -0.7212 1.2492 23 1 1.6767 -1.7489 1.2493 24 6 3.5701 -0.7206 1.2496 25 6 4.0800 -1.4424 2.4985 26 6 3.5695 -0.7220 3.7481 27 6 2.0395 -0.7225 3.7478 28 1 1.6766 -1.7503 3.7471 29 6 1.5290 -0.0027 4.9976 30 6 1.5295 -0.0008 2.4988 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.2490 -1.6318 -1.1526 35 1 3.9043 -2.2242 -3.6854 36 1 2.6638 -2.4915 -2.4355 37 1 2.3074 -3.8954 -4.4996 38 1 0.9431 -2.8057 -4.1523 39 1 1.5606 -2.7581 -6.5636 40 1 3.2040 -2.2364 -6.1226 41 1 1.2829 2.6479 -8.6706 42 1 3.5632 0.0709 -5.1328 43 1 2.1393 1.0307 -4.6595 44 1 3.9338 -1.2343 0.3596 45 1 3.9330 0.3071 1.2498 46 1 5.1701 -1.4424 2.4985 47 1 3.7170 -2.4702 2.4979 48 1 3.9325 0.3057 3.7487 49 1 3.9332 -1.2360 4.6378 50 1 0.4390 -0.0027 4.9972 51 1 1.8924 -0.5173 5.8871 52 1 1.8920 1.0251 4.9986 53 1 1.8925 1.0270 2.4994 54 1 0.4395 -0.0008 2.4988 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595649240.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:54 Heat of formation + Delta-G solvation = -79.996305 kcal Electronic energy + Delta-G solvation = -29210.016136 eV Core-core repulsion = 25565.411742 eV Total energy + Delta-G solvation = -3644.604394 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.62501 -40.12311 -38.63272 -36.56003 -35.36402 -33.84794 -33.18310 -32.58625 -31.96479 -29.68716 -27.33084 -27.01265 -26.33885 -24.57659 -23.56694 -22.42012 -21.79158 -21.40934 -20.74507 -20.27383 -19.16251 -18.82232 -17.47822 -16.76712 -16.50389 -16.16923 -15.76186 -15.51952 -15.33059 -15.26229 -15.13920 -14.90216 -14.68201 -14.52678 -14.35872 -14.02466 -13.91572 -13.75971 -13.53940 -13.21766 -13.16530 -12.93631 -12.74021 -12.45768 -12.38760 -12.33707 -12.15069 -12.11888 -11.86823 -11.81467 -11.66422 -11.59540 -11.37229 -11.28597 -11.08645 -11.02732 -10.89670 -10.85992 -10.80335 -10.17122 -9.40809 -8.40461 -6.41453 1.21327 1.27996 1.40456 1.65513 2.14866 2.19744 2.92035 2.99841 3.55686 3.77743 3.82288 3.98138 4.04644 4.10523 4.14441 4.23897 4.28129 4.36809 4.43961 4.45026 4.51844 4.58723 4.60304 4.62611 4.67445 4.69964 4.71591 4.83072 4.83407 4.87399 4.91722 4.98037 5.00134 5.03689 5.12804 5.15475 5.20583 5.21842 5.23559 5.30913 5.36323 5.39795 5.41523 5.44141 5.51840 5.53430 5.61230 5.62997 5.67641 5.70492 6.03022 6.26284 6.67390 7.03745 7.24176 7.57837 8.75620 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.021009 B = 0.003152 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.410561 B = 8880.920989 C = 9599.191399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.161 3.839 3 H 0.055 0.945 4 N -0.723 5.723 5 C 0.696 3.304 6 O -0.646 6.646 7 N -0.629 5.629 8 C 0.110 3.890 9 C -0.126 4.126 10 C -0.097 4.097 11 C 0.004 3.996 12 H 0.012 0.988 13 C -0.509 4.509 14 H 0.053 0.947 15 C 0.030 3.970 16 N -0.937 5.937 17 Si 0.939 3.061 18 H -0.285 1.285 19 H -0.294 1.294 20 H -0.271 1.271 21 C 0.128 3.872 22 C -0.078 4.078 23 H 0.094 0.906 24 C -0.113 4.113 25 C -0.114 4.114 26 C -0.115 4.115 27 C -0.086 4.086 28 H 0.078 0.922 29 C -0.148 4.148 30 C -0.107 4.107 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.021 0.979 34 H 0.408 0.592 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.267 0.733 42 H 0.059 0.941 43 H 0.045 0.955 44 H 0.060 0.940 45 H 0.043 0.957 46 H 0.062 0.938 47 H 0.073 0.927 48 H 0.051 0.949 49 H 0.069 0.931 50 H 0.057 0.943 51 H 0.060 0.940 52 H 0.048 0.952 53 H 0.052 0.948 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.645 -12.954 29.054 31.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.056 3.944 3 H 0.074 0.926 4 N -0.382 5.382 5 C 0.397 3.603 6 O -0.529 6.529 7 N -0.365 5.365 8 C -0.011 4.011 9 C -0.164 4.164 10 C -0.135 4.135 11 C -0.015 4.015 12 H 0.030 0.970 13 C -0.548 4.548 14 H 0.071 0.929 15 C -0.169 4.169 16 N -0.577 5.577 17 Si 0.770 3.230 18 H -0.212 1.212 19 H -0.221 1.221 20 H -0.197 1.197 21 C 0.004 3.996 22 C -0.096 4.096 23 H 0.112 0.888 24 C -0.151 4.151 25 C -0.151 4.151 26 C -0.153 4.153 27 C -0.104 4.104 28 H 0.097 0.903 29 C -0.205 4.205 30 C -0.145 4.145 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.040 0.960 34 H 0.248 0.752 35 H 0.101 0.899 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.062 0.938 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.070 0.930 49 H 0.088 0.912 50 H 0.076 0.924 51 H 0.079 0.921 52 H 0.067 0.933 53 H 0.071 0.929 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.472 -11.961 28.935 31.407 hybrid contribution -0.271 1.140 -0.342 1.221 sum 2.201 -10.821 28.593 30.651 Atomic orbital electron populations 1.22221 0.95381 1.02780 1.01496 1.20907 0.93783 0.96327 0.83339 0.92641 1.45174 1.71283 1.13982 1.07717 1.16196 0.77864 0.84701 0.81529 1.90855 1.60666 1.15526 1.85807 1.47563 1.71034 1.12008 1.05890 1.21930 1.00111 0.78103 1.00991 1.21930 1.00069 1.00362 0.94017 1.21365 1.00916 0.93995 0.97241 1.19435 0.94500 0.95238 0.92370 0.97012 1.21334 1.41676 0.96688 0.95091 0.92894 1.25589 0.95541 0.98984 0.96763 1.69982 1.49952 1.14666 1.23080 0.86050 0.78492 0.79028 0.79473 1.21221 1.22115 1.19658 1.21933 1.00281 0.95694 0.81646 1.21342 0.95721 1.00447 0.92139 0.88772 1.21553 0.94649 1.00309 0.98573 1.21499 1.00283 0.99659 0.93680 1.21612 0.95264 1.00412 0.97963 1.21089 0.95272 1.00023 0.94061 0.90329 1.21828 1.01151 1.00243 0.97281 1.21668 1.01016 0.98879 0.92978 0.90783 0.89669 0.95987 0.75199 0.89891 0.87650 0.87317 0.92450 0.92543 0.92178 0.92374 0.92237 0.93708 0.92080 0.93808 0.91955 0.90807 0.93001 0.91224 0.92394 0.92072 0.93293 0.92899 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 9.13 71.98 0.66 -2.94 16 2 C 0.16 3.72 2.20 44.99 0.10 3.82 16 3 H 0.06 1.66 7.51 -2.39 -0.02 1.64 16 4 N -0.72 -18.47 4.30 -457.81 -1.97 -20.44 16 5 C 0.70 26.29 8.26 179.05 1.48 27.77 16 6 O -0.65 -31.53 15.41 -3.98 -0.06 -31.59 16 7 N -0.63 -22.93 2.97 -836.93 -2.49 -25.42 16 8 C 0.11 2.64 6.43 86.36 0.56 3.20 16 9 C -0.13 -3.16 6.08 30.67 0.19 -2.97 16 10 C -0.10 -3.50 5.11 30.62 0.16 -3.34 16 11 C 0.00 0.21 1.84 -11.46 -0.02 0.19 16 12 H 0.01 0.60 7.19 -2.39 -0.02 0.58 16 13 C -0.51 -29.27 9.14 25.60 0.23 -29.03 16 14 H 0.05 3.24 7.99 -2.91 -0.02 3.22 16 15 C 0.03 1.82 5.45 84.65 0.46 2.28 16 16 N -0.94 -59.78 13.96 21.45 0.30 -59.48 16 17 Si 0.94 51.81 24.32 68.60 1.67 53.47 16 18 H -0.28 -16.16 6.92 99.48 0.69 -15.47 16 19 H -0.29 -15.78 7.11 99.48 0.71 -15.07 16 20 H -0.27 -15.04 6.52 99.48 0.65 -14.39 16 21 C 0.13 5.91 5.10 86.36 0.44 6.35 16 22 C -0.08 -1.15 1.82 -10.79 -0.02 -1.17 16 23 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 24 C -0.11 -1.75 5.05 30.59 0.15 -1.60 16 25 C -0.11 -1.32 5.92 30.59 0.18 -1.13 16 26 C -0.11 -1.29 5.20 30.59 0.16 -1.13 16 27 C -0.09 -0.92 2.72 -10.80 -0.03 -0.95 16 28 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 29 C -0.15 -1.48 9.19 71.98 0.66 -0.82 16 30 C -0.11 -1.44 4.13 30.59 0.13 -1.32 16 31 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.08 1.54 6.43 -2.39 -0.02 1.52 16 33 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.41 7.37 5.85 -92.71 -0.54 6.83 16 35 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.11 1.67 5.56 -2.39 -0.01 1.65 16 37 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.06 2.10 8.14 -2.39 -0.02 2.09 16 41 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 42 H 0.06 2.74 8.14 -2.38 -0.02 2.72 16 43 H 0.04 2.40 2.38 -2.39 -0.01 2.39 16 44 H 0.06 0.97 7.45 -2.38 -0.02 0.95 16 45 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 47 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 51 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 52 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 53 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 54 H 0.07 0.92 6.43 -2.39 -0.02 0.91 16 Total: -1.00 -77.72 394.09 3.17 -74.55 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.24 Total: 11.72 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 5.48 Total: -2.81 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -4.16 Total: -105.34 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.06 Total: -31.59 kcal Atomic # 14 Polarization: 51.81 SS G_CDS: 1.67 Total: 53.47 kcal Total: -77.72 3.17 -74.55 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595649240.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.448 kcal (2) G-P(sol) polarization free energy of solvation -77.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds