Wall clock time and date at job start Tue Mar 31 2020 15:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47579 * 2 1 4 4 N 1.46502 * 109.47342 * 239.99719 * 2 1 3 5 5 C 1.34772 * 119.99901 * 84.99625 * 4 2 1 6 6 O 1.21593 * 120.00229 * 4.99790 * 5 4 2 7 7 N 1.34784 * 120.00093 * 184.98945 * 5 4 2 8 8 C 1.46921 * 120.62806 * 354.77833 * 7 5 4 9 9 C 1.53199 * 108.89223 * 233.55630 * 8 7 5 10 10 C 1.53068 * 109.29277 * 305.58079 * 9 8 7 11 11 C 1.53047 * 109.66186 * 61.15546 * 10 9 8 12 12 H 1.08998 * 109.52485 * 58.66387 * 11 10 9 13 13 C 1.50700 * 109.49888 * 178.74708 * 11 10 9 14 14 H 1.08002 * 119.99680 * 359.83556 * 13 11 10 15 15 C 1.37870 * 119.99829 * 179.83774 * 13 11 10 16 16 N 1.31515 * 120.00354 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99853 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47349 * 59.99875 * 17 15 13 19 19 H 1.48502 * 109.47003 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47004 * 299.99454 * 17 15 13 21 21 C 1.46927 * 120.62958 * 174.79730 * 7 5 4 22 22 C 1.52999 * 109.46882 * 119.99984 * 2 1 3 23 23 H 1.08996 * 109.47320 * 60.00319 * 22 2 1 24 24 C 1.53006 * 109.47224 * 180.02562 * 22 2 1 25 25 C 1.52999 * 109.47224 * 180.02562 * 24 22 2 26 26 C 1.52998 * 109.47077 * 299.99762 * 25 24 22 27 27 C 1.52998 * 109.47086 * 59.99840 * 26 25 24 28 28 H 1.09007 * 109.46675 * 60.00436 * 27 26 25 29 29 C 1.52998 * 109.47086 * 179.97438 * 27 26 25 30 30 C 1.52998 * 109.47077 * 299.99841 * 22 2 1 31 31 H 1.09007 * 109.47155 * 60.00301 * 1 2 3 32 32 H 1.09000 * 109.47579 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47482 * 300.00531 * 1 2 3 34 34 H 0.97003 * 120.00283 * 265.00435 * 4 2 1 35 35 H 1.08997 * 109.58881 * 353.41460 * 8 7 5 36 36 H 1.08997 * 109.58971 * 113.70031 * 8 7 5 37 37 H 1.09007 * 109.49767 * 65.38874 * 9 8 7 38 38 H 1.08998 * 109.49421 * 185.48372 * 9 8 7 39 39 H 1.08998 * 109.35236 * 301.12623 * 10 9 8 40 40 H 1.09004 * 109.44919 * 181.24330 * 10 9 8 41 41 H 0.96998 * 120.00521 * 180.02562 * 16 15 13 42 42 H 1.08995 * 109.58795 * 246.15874 * 21 7 5 43 43 H 1.09001 * 109.58614 * 6.59034 * 21 7 5 44 44 H 1.09005 * 109.46414 * 299.99935 * 24 22 2 45 45 H 1.08994 * 109.47167 * 59.99239 * 24 22 2 46 46 H 1.09004 * 109.46721 * 179.97438 * 25 24 22 47 47 H 1.09004 * 109.47122 * 60.00079 * 25 24 22 48 48 H 1.09003 * 109.46663 * 300.00119 * 26 25 24 49 49 H 1.08998 * 109.47002 * 180.02562 * 26 25 24 50 50 H 1.08997 * 109.47228 * 180.02562 * 29 27 26 51 51 H 1.09007 * 109.47054 * 300.00011 * 29 27 26 52 52 H 1.08992 * 109.47091 * 60.00207 * 29 27 26 53 53 H 1.09000 * 109.47059 * 299.99784 * 30 22 2 54 54 H 1.08997 * 109.47228 * 60.00532 * 30 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.9452 1.1802 -2.3912 7 7 2.4995 -0.6746 -3.4804 8 6 2.8575 -2.0988 -3.4341 9 6 4.2313 -2.2863 -4.0857 10 6 4.2095 -1.6859 -5.4936 11 6 3.9117 -0.1870 -5.4097 12 1 4.6712 0.3016 -4.7994 13 6 3.9215 0.4061 -6.7950 14 1 4.1228 -0.2223 -7.6500 15 6 3.6735 1.7509 -6.9709 16 7 3.4279 2.5159 -5.9298 17 14 3.6849 2.4859 -8.6881 18 1 2.6507 1.8188 -9.5191 19 1 3.3916 3.9394 -8.6064 20 1 5.0209 2.2840 -9.3041 21 6 2.5334 0.0208 -4.7742 22 6 2.0398 -0.7213 1.2493 23 1 1.6766 -1.7489 1.2492 24 6 3.5699 -0.7207 1.2497 25 6 4.0798 -1.4425 2.4986 26 6 3.5693 -0.7222 3.7481 27 6 2.0393 -0.7226 3.7477 28 1 1.6764 -1.7505 3.7471 29 6 1.5288 -0.0028 4.9976 30 6 1.5299 0.0000 2.4984 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 2.2490 -1.6319 -1.1526 35 1 2.8964 -2.4323 -2.3972 36 1 2.1130 -2.6806 -3.9775 37 1 4.9896 -1.7801 -3.4882 38 1 4.4639 -3.3495 -4.1447 39 1 3.4360 -2.1773 -6.0838 40 1 5.1791 -1.8375 -5.9679 41 1 3.2531 3.4620 -6.0535 42 1 1.7638 -0.3879 -5.4290 43 1 2.3584 1.0857 -4.6214 44 1 3.9335 -1.2344 0.3596 45 1 3.9329 0.3070 1.2498 46 1 5.1699 -1.4425 2.4986 47 1 3.7169 -2.4704 2.4979 48 1 3.9324 0.3056 3.7487 49 1 3.9330 -1.2362 4.6378 50 1 0.4389 -0.0035 4.9975 51 1 1.8921 -0.5175 5.8871 52 1 1.8918 1.0249 4.9987 53 1 1.8933 1.0277 2.4984 54 1 0.4399 0.0000 2.4985 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595649241.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:58 Heat of formation + Delta-G solvation = -84.182887 kcal Electronic energy + Delta-G solvation = -29051.375440 eV Core-core repulsion = 25406.589502 eV Total energy + Delta-G solvation = -3644.785937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.44800 -40.04192 -38.45033 -36.45533 -35.30742 -33.66181 -33.15325 -32.40546 -31.38953 -29.63975 -27.30835 -26.98270 -26.14196 -24.52537 -23.44533 -22.40246 -21.79920 -21.33964 -20.71114 -20.17999 -18.97644 -18.18972 -17.32117 -16.69576 -16.34832 -16.11718 -15.66855 -15.32901 -15.26953 -15.17156 -14.99335 -14.66168 -14.46143 -14.39968 -14.21525 -13.97785 -13.79525 -13.59693 -13.40089 -13.19801 -12.85002 -12.77496 -12.66720 -12.42171 -12.37121 -12.27411 -12.22897 -12.10661 -11.85487 -11.80614 -11.66648 -11.59156 -11.29509 -11.17624 -10.99712 -10.92578 -10.83611 -10.77299 -10.50410 -10.05906 -9.22201 -8.08589 -6.26743 1.40446 1.42411 1.50729 1.84204 2.30525 2.42417 3.07818 3.20859 3.58908 3.79645 3.84218 4.04980 4.12722 4.17388 4.24243 4.29830 4.31828 4.39093 4.48750 4.60157 4.60991 4.63243 4.66119 4.72756 4.75515 4.81861 4.84917 4.85000 4.87540 4.94462 5.03393 5.05716 5.11120 5.15013 5.21850 5.26249 5.27862 5.28799 5.31296 5.36477 5.37409 5.41420 5.46956 5.53774 5.57047 5.66822 5.68218 5.73665 5.91037 6.00485 6.21444 6.37789 6.86686 7.20377 7.43243 7.76222 8.94050 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.020823 B = 0.002845 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.359161 B = 9838.626700 C =10335.256968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.161 3.839 3 H 0.048 0.952 4 N -0.726 5.726 5 C 0.694 3.306 6 O -0.642 6.642 7 N -0.629 5.629 8 C 0.111 3.889 9 C -0.125 4.125 10 C -0.105 4.105 11 C 0.039 3.961 12 H -0.018 1.018 13 C -0.537 4.537 14 H 0.063 0.937 15 C 0.008 3.992 16 N -0.915 5.915 17 Si 0.958 3.042 18 H -0.266 1.266 19 H -0.290 1.290 20 H -0.268 1.268 21 C 0.144 3.856 22 C -0.077 4.077 23 H 0.096 0.904 24 C -0.114 4.114 25 C -0.113 4.113 26 C -0.115 4.115 27 C -0.086 4.086 28 H 0.080 0.920 29 C -0.147 4.147 30 C -0.107 4.107 31 H 0.024 0.976 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.405 0.595 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.047 0.953 38 H 0.105 0.895 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.258 0.742 42 H 0.033 0.967 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.039 0.961 46 H 0.059 0.941 47 H 0.075 0.925 48 H 0.049 0.951 49 H 0.071 0.929 50 H 0.059 0.941 51 H 0.061 0.939 52 H 0.047 0.953 53 H 0.050 0.950 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.437 -14.381 20.961 25.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.056 3.944 3 H 0.066 0.934 4 N -0.385 5.385 5 C 0.395 3.605 6 O -0.523 6.523 7 N -0.365 5.365 8 C -0.011 4.011 9 C -0.163 4.163 10 C -0.142 4.142 11 C 0.019 3.981 12 H 0.000 1.000 13 C -0.575 4.575 14 H 0.081 0.919 15 C -0.191 4.191 16 N -0.553 5.553 17 Si 0.783 3.217 18 H -0.191 1.191 19 H -0.216 1.216 20 H -0.193 1.193 21 C 0.021 3.979 22 C -0.096 4.096 23 H 0.114 0.886 24 C -0.152 4.152 25 C -0.151 4.151 26 C -0.152 4.152 27 C -0.104 4.104 28 H 0.099 0.901 29 C -0.204 4.204 30 C -0.145 4.145 31 H 0.043 0.957 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.244 0.756 35 H 0.117 0.883 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.124 0.876 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.051 0.949 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.094 0.906 48 H 0.068 0.932 49 H 0.089 0.911 50 H 0.078 0.922 51 H 0.080 0.920 52 H 0.066 0.934 53 H 0.069 0.931 54 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.639 -13.351 20.984 25.136 hybrid contribution 0.283 0.997 -1.311 1.672 sum -3.356 -12.353 19.672 23.471 Atomic orbital electron populations 1.22188 0.94944 1.02786 1.01580 1.20872 0.94098 0.96001 0.83387 0.93370 1.45178 1.71703 1.13821 1.07804 1.16228 0.78126 0.84673 0.81471 1.90882 1.60404 1.15412 1.85625 1.47669 1.70265 1.11713 1.06810 1.21830 0.97031 0.80212 1.02055 1.21909 0.96421 1.02021 0.95962 1.21506 1.00618 0.95505 0.96600 1.18901 0.91965 0.92907 0.94284 0.99963 1.21497 1.48599 0.93896 0.93526 0.91908 1.25929 0.94723 0.97956 1.00539 1.70115 1.48150 1.05822 1.31226 0.85614 0.78999 0.76957 0.80125 1.19086 1.21578 1.19263 1.21538 0.98185 0.97910 0.80308 1.21341 0.95373 1.00523 0.92358 0.88613 1.21555 0.95083 1.00069 0.98515 1.21497 1.00182 0.99715 0.93660 1.21614 0.95463 1.00309 0.97848 1.21104 0.95100 1.00114 0.94087 0.90125 1.21821 1.01227 1.00184 0.97200 1.21678 1.01126 0.98748 0.92917 0.95693 0.90653 0.89739 0.75578 0.88295 0.90262 0.93461 0.87648 0.92363 0.93081 0.93255 0.94875 0.90805 0.92560 0.94246 0.92176 0.90617 0.93180 0.91053 0.92219 0.92013 0.93392 0.93130 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 9.13 71.98 0.66 -3.06 16 2 C 0.16 4.24 2.20 44.99 0.10 4.34 16 3 H 0.05 1.66 7.51 -2.39 -0.02 1.64 16 4 N -0.73 -21.39 4.29 -457.82 -1.97 -23.35 16 5 C 0.69 29.61 8.26 179.05 1.48 31.09 16 6 O -0.64 -35.11 15.39 -4.01 -0.06 -35.17 16 7 N -0.63 -26.03 2.97 -836.89 -2.49 -28.52 16 8 C 0.11 3.16 6.38 86.37 0.55 3.71 16 9 C -0.13 -3.71 6.09 30.68 0.19 -3.52 16 10 C -0.10 -4.10 5.10 30.63 0.16 -3.95 16 11 C 0.04 2.02 2.26 -11.46 -0.03 1.99 16 12 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 13 C -0.54 -30.26 8.56 25.60 0.22 -30.05 16 14 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 15 C 0.01 0.46 5.30 84.65 0.45 0.90 16 16 N -0.91 -57.50 11.39 21.44 0.24 -57.26 16 17 Si 0.96 45.26 29.54 68.60 2.03 47.29 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 C 0.14 7.45 5.41 86.36 0.47 7.91 16 22 C -0.08 -1.37 1.82 -10.79 -0.02 -1.39 16 23 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 24 C -0.11 -2.25 5.05 30.60 0.15 -2.09 16 25 C -0.11 -1.66 5.92 30.59 0.18 -1.48 16 26 C -0.11 -1.56 5.20 30.59 0.16 -1.40 16 27 C -0.09 -1.07 2.72 -10.78 -0.03 -1.10 16 28 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 29 C -0.15 -1.67 9.19 71.98 0.66 -1.01 16 30 C -0.11 -1.67 4.13 30.61 0.13 -1.54 16 31 H 0.02 0.76 8.14 -2.38 -0.02 0.75 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 1.63 6.43 -2.39 -0.02 1.61 16 34 H 0.41 8.96 5.88 -92.71 -0.54 8.41 16 35 H 0.10 2.03 5.65 -2.39 -0.01 2.02 16 36 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 42 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.07 4.62 5.11 -2.39 -0.01 4.60 16 44 H 0.06 1.18 7.45 -2.38 -0.02 1.16 16 45 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 47 H 0.08 0.90 8.14 -2.38 -0.02 0.89 16 48 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 52 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 53 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 54 H 0.08 1.07 6.43 -2.39 -0.02 1.06 16 Total: -1.00 -76.41 400.99 3.53 -72.88 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 0.30 Total: 24.78 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 5.47 Total: -0.63 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -4.21 Total: -109.13 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -0.06 Total: -35.17 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -76.41 3.53 -72.88 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595649241.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.303 kcal (2) G-P(sol) polarization free energy of solvation -76.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds