Wall clock time and date at job start Tue Mar 31 2020 15:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.54216 * 2 1 4 4 C 1.54887 * 110.48598 * 122.61230 * 2 1 3 5 5 C 1.54889 * 102.74887 * 156.62054 * 4 2 1 6 6 C 1.54260 * 104.19702 * 322.05483 * 5 4 2 7 7 C 1.52997 * 110.03269 * 142.89508 * 6 5 4 8 8 C 1.50704 * 110.03317 * 264.27835 * 6 5 4 9 9 O 1.21279 * 119.99698 * 129.36772 * 8 6 5 10 10 N 1.34773 * 120.00008 * 309.36836 * 8 6 5 11 11 C 1.47077 * 120.88049 * 353.49716 * 10 8 6 12 12 C 1.53696 * 108.28071 * 128.75431 * 11 10 8 13 13 N 1.46900 * 109.25727 * 54.07755 * 12 11 10 14 14 C 1.46894 * 111.00014 * 172.61083 * 13 12 11 15 15 C 1.50696 * 109.47390 * 59.51842 * 14 13 12 16 16 H 1.08002 * 119.99707 * 5.27082 * 15 14 13 17 17 C 1.37874 * 120.00212 * 185.27113 * 15 14 13 18 18 N 1.31512 * 120.00361 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00220 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46781 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46923 * 120.00196 * 19 17 15 22 22 H 1.48498 * 109.47414 * 240.00382 * 19 17 15 23 23 C 1.46904 * 111.27055 * 296.76349 * 13 12 11 24 24 C 1.47076 * 120.88281 * 173.77045 * 10 8 6 25 25 C 1.53875 * 106.59751 * 23.61048 * 6 5 4 26 26 C 1.53000 * 110.03010 * 119.28215 * 25 6 5 27 27 C 1.52994 * 110.03576 * 240.66711 * 25 6 5 28 28 H 1.09000 * 109.47119 * 298.84679 * 1 2 3 29 29 H 1.08997 * 109.46959 * 58.83955 * 1 2 3 30 30 H 1.08994 * 109.47057 * 178.84141 * 1 2 3 31 31 H 1.08997 * 110.76027 * 38.30067 * 4 2 1 32 32 H 1.09002 * 110.75362 * 274.93384 * 4 2 1 33 33 H 1.09003 * 110.48532 * 80.74161 * 5 4 2 34 34 H 1.09004 * 110.48337 * 203.24557 * 5 4 2 35 35 H 1.08995 * 109.47180 * 64.35372 * 7 6 5 36 36 H 1.09003 * 109.47176 * 184.35732 * 7 6 5 37 37 H 1.09005 * 109.47552 * 304.35661 * 7 6 5 38 38 H 1.09006 * 109.62900 * 248.52034 * 11 10 8 39 39 H 1.08999 * 109.63043 * 9.10047 * 11 10 8 40 40 H 1.08997 * 109.64484 * 294.07978 * 12 11 10 41 41 H 1.08998 * 109.42404 * 173.94791 * 12 11 10 42 42 H 1.09007 * 109.47185 * 179.51894 * 14 13 12 43 43 H 1.09000 * 109.47249 * 299.51729 * 14 13 12 44 44 H 0.96993 * 120.00781 * 179.97438 * 18 17 15 45 45 H 1.09001 * 109.48786 * 303.14425 * 23 13 12 46 46 H 1.08996 * 109.49330 * 183.06321 * 23 13 12 47 47 H 1.09001 * 109.62742 * 350.89567 * 24 10 8 48 48 H 1.08995 * 109.62855 * 111.47313 * 24 10 8 49 49 H 1.09003 * 109.47315 * 60.00248 * 26 25 6 50 50 H 1.09002 * 109.47060 * 180.02562 * 26 25 6 51 51 H 1.09002 * 109.47702 * 299.99841 * 26 25 6 52 52 H 1.08998 * 109.47094 * 54.76510 * 27 25 6 53 53 H 1.08999 * 109.47365 * 174.76545 * 27 25 6 54 54 H 1.09004 * 109.46871 * 294.76538 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0721 -0.7820 1.2222 5 6 3.4907 -1.1979 0.7600 6 6 3.3166 -1.5406 -0.7340 7 6 4.5465 -1.0866 -1.5226 8 6 3.1140 -3.0243 -0.9031 9 8 2.1826 -3.4381 -1.5604 10 7 3.9680 -3.8914 -0.3240 11 6 5.1814 -3.4148 0.3569 12 6 5.2233 -4.0392 1.7607 13 7 5.1093 -5.4992 1.6451 14 6 5.3201 -6.1483 2.9459 15 6 4.2920 -5.6500 3.9286 16 1 3.5042 -4.9896 3.5974 17 6 4.3571 -6.0371 5.2502 18 7 5.3167 -6.8408 5.6536 19 14 3.0830 -5.4188 6.4685 20 1 2.1174 -4.5340 5.7685 21 1 2.3587 -6.5742 7.0563 22 1 3.7597 -4.6571 7.5488 23 6 3.8168 -5.8887 1.0658 24 6 3.7142 -5.3396 -0.3612 25 6 2.0699 -0.7789 -1.2172 26 6 2.4508 0.1939 -2.3350 27 6 1.0144 -1.7661 -1.7192 28 1 -0.3633 0.4958 0.9001 29 1 -0.3633 0.5317 -0.8794 30 1 -0.3633 -1.0274 -0.0208 31 1 1.4580 -1.6600 1.4224 32 1 2.1251 -0.1381 2.1001 33 1 4.1898 -0.3707 0.8828 34 1 3.8325 -2.0708 1.3163 35 1 5.4186 -1.6506 -1.1919 36 1 4.3818 -1.2624 -2.5857 37 1 4.7155 -0.0233 -1.3521 38 1 6.0621 -3.7190 -0.2088 39 1 5.1526 -2.3283 0.4388 40 1 4.3954 -3.6559 2.3571 41 1 6.1674 -3.7851 2.2425 42 1 5.2218 -7.2281 2.8334 43 1 6.3186 -5.9107 3.3130 44 1 5.3627 -7.1129 6.5835 45 1 3.0085 -5.4795 1.6719 46 1 3.7409 -6.9758 1.0435 47 1 2.7148 -5.5262 -0.7543 48 1 4.4564 -5.8252 -0.9946 49 1 2.8775 -0.3614 -3.1703 50 1 1.5618 0.7285 -2.6699 51 1 3.1843 0.9081 -1.9610 52 1 0.7996 -2.4963 -0.9389 53 1 0.1022 -1.2255 -1.9718 54 1 1.3892 -2.2799 -2.6044 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602200336.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:55 Heat of formation + Delta-G solvation = -9.040081 kcal Electronic energy + Delta-G solvation = -30722.606363 eV Core-core repulsion = 27081.078862 eV Total energy + Delta-G solvation = -3641.527501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.59690 -39.93864 -38.58708 -36.40208 -34.65249 -33.86309 -33.10260 -31.84106 -29.96804 -28.93262 -28.30800 -27.30830 -25.27828 -24.89489 -24.32330 -24.01365 -22.50013 -21.44897 -20.09427 -19.09635 -18.45205 -17.54148 -17.01261 -16.85424 -16.75208 -16.12002 -15.97482 -15.76068 -15.56749 -15.11787 -14.94529 -14.78442 -14.47078 -14.24735 -14.09102 -14.08712 -13.68134 -13.61427 -13.24274 -13.09088 -12.99810 -12.76942 -12.75415 -12.57883 -12.50866 -12.32861 -12.21540 -12.11059 -11.96904 -11.81042 -11.72547 -11.67418 -11.52565 -11.39176 -11.25134 -11.14899 -10.99653 -10.63857 -9.72267 -9.53397 -9.03702 -8.18994 -6.38053 1.31490 1.34289 1.44444 1.65837 2.05197 2.33489 3.06191 3.27819 3.37622 3.46151 3.62282 3.91116 4.04834 4.10817 4.18826 4.20430 4.31430 4.34474 4.38734 4.47617 4.48190 4.50800 4.55823 4.61124 4.66354 4.74985 4.79710 4.80768 4.87772 4.89515 4.95174 4.98901 5.03315 5.04449 5.14088 5.16473 5.18270 5.19226 5.22723 5.27025 5.28450 5.30381 5.34388 5.40958 5.50518 5.55212 5.65386 5.71094 5.79057 5.98391 6.16998 6.44043 6.54209 6.82250 7.26166 7.33586 8.83497 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.004194 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.348961 B = 6675.294903 C = 7533.272597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 H 0.097 0.903 4 C -0.124 4.124 5 C -0.132 4.132 6 C -0.070 4.070 7 C -0.142 4.142 8 C 0.511 3.489 9 O -0.560 6.560 10 N -0.609 5.609 11 C 0.103 3.897 12 C 0.050 3.950 13 N -0.535 5.535 14 C 0.200 3.800 15 C -0.554 4.554 16 H 0.049 0.951 17 C 0.018 3.982 18 N -0.922 5.922 19 Si 0.951 3.049 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.273 1.273 23 C 0.057 3.943 24 C 0.127 3.873 25 C -0.047 4.047 26 C -0.134 4.134 27 C -0.101 4.101 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.034 0.966 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.125 0.875 40 H 0.022 0.978 41 H 0.078 0.922 42 H 0.004 0.996 43 H 0.015 0.985 44 H 0.266 0.734 45 H 0.011 0.989 46 H 0.072 0.928 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.054 0.946 50 H 0.057 0.943 51 H 0.077 0.923 52 H 0.033 0.967 53 H 0.027 0.973 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.703 17.275 -14.515 22.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.098 4.098 3 H 0.115 0.885 4 C -0.161 4.161 5 C -0.170 4.170 6 C -0.073 4.073 7 C -0.199 4.199 8 C 0.302 3.698 9 O -0.440 6.440 10 N -0.342 5.342 11 C -0.019 4.019 12 C -0.079 4.079 13 N -0.259 5.259 14 C 0.074 3.926 15 C -0.593 4.593 16 H 0.067 0.933 17 C -0.182 4.182 18 N -0.562 5.562 19 Si 0.776 3.224 20 H -0.198 1.198 21 H -0.205 1.205 22 H -0.199 1.199 23 C -0.073 4.073 24 C 0.003 3.997 25 C -0.048 4.048 26 C -0.191 4.191 27 C -0.157 4.157 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.098 0.902 33 H 0.126 0.874 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.143 0.857 40 H 0.041 0.959 41 H 0.097 0.903 42 H 0.022 0.978 43 H 0.033 0.967 44 H 0.075 0.925 45 H 0.030 0.970 46 H 0.091 0.909 47 H 0.098 0.902 48 H 0.098 0.902 49 H 0.073 0.927 50 H 0.077 0.923 51 H 0.096 0.904 52 H 0.052 0.948 53 H 0.046 0.954 54 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.736 16.791 -15.040 22.707 hybrid contribution -1.354 -0.587 1.875 2.386 sum -4.090 16.204 -13.165 21.275 Atomic orbital electron populations 1.21860 0.95237 1.01174 1.01808 1.22054 0.95554 0.99337 0.92867 0.88504 1.22559 0.95763 0.99178 0.98628 1.22948 0.98492 1.02816 0.92696 1.21391 0.98815 0.89246 0.97815 1.22178 0.94479 1.03516 0.99757 1.21379 0.80450 0.90028 0.77960 1.90855 1.30919 1.80768 1.41471 1.48395 1.24085 1.06574 1.55136 1.22559 0.86818 1.01029 0.91481 1.22399 1.00970 0.88362 0.96166 1.62420 1.30074 1.07930 1.25430 1.19436 0.95395 0.93256 0.84532 1.21924 1.12916 1.29563 0.94879 0.93278 1.25705 0.97328 0.95011 1.00170 1.70041 1.33597 1.35264 1.17282 0.85624 0.79301 0.78293 0.79167 1.19790 1.20531 1.19876 1.22196 0.90767 1.00009 0.94296 1.21571 1.02021 0.80362 0.95708 1.21133 0.92740 0.94910 0.95990 1.21982 1.01803 0.98249 0.97024 1.22176 0.96500 0.95603 1.01444 0.92431 0.91753 0.94064 0.94668 0.90227 0.87429 0.91362 0.91467 0.91898 0.88486 0.89774 0.85709 0.95937 0.90318 0.97834 0.96659 0.92524 0.97038 0.90943 0.90170 0.90154 0.92665 0.92348 0.90373 0.94834 0.95409 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 7.97 71.98 0.57 -2.20 16 2 C -0.08 -1.50 2.91 -9.72 -0.03 -1.53 16 3 H 0.10 1.42 7.84 -2.39 -0.02 1.40 16 4 C -0.12 -2.79 6.33 31.88 0.20 -2.59 16 5 C -0.13 -2.80 4.38 31.67 0.14 -2.66 16 6 C -0.07 -1.50 0.61 -52.21 -0.03 -1.54 16 7 C -0.14 -2.23 6.93 71.98 0.50 -1.74 16 8 C 0.51 15.06 6.20 87.66 0.54 15.61 16 9 O -0.56 -19.51 10.20 -3.03 -0.03 -19.54 16 10 N -0.61 -18.23 2.90 -817.07 -2.37 -20.60 16 11 C 0.10 2.73 4.35 86.50 0.38 3.11 16 12 C 0.05 1.78 4.88 86.54 0.42 2.20 16 13 N -0.53 -22.08 4.83 -898.90 -4.34 -26.42 16 14 C 0.20 10.26 5.11 85.56 0.44 10.70 16 15 C -0.55 -30.23 7.75 25.60 0.20 -30.03 16 16 H 0.05 2.71 5.88 -2.91 -0.02 2.69 16 17 C 0.02 0.99 5.46 84.65 0.46 1.45 16 18 N -0.92 -53.90 13.29 21.45 0.28 -53.61 16 19 Si 0.95 43.75 29.54 68.60 2.03 45.78 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 C 0.06 2.22 5.24 86.38 0.45 2.67 16 24 C 0.13 4.12 6.57 86.35 0.57 4.69 16 25 C -0.05 -0.97 0.86 -51.46 -0.04 -1.02 16 26 C -0.13 -2.04 7.20 71.98 0.52 -1.53 16 27 C -0.10 -2.71 5.43 71.98 0.39 -2.32 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 1.08 7.84 -2.39 -0.02 1.06 16 30 H 0.04 0.96 6.43 -2.39 -0.02 0.95 16 31 H 0.03 1.00 8.06 -2.39 -0.02 0.98 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.11 1.64 7.82 -2.39 -0.02 1.62 16 34 H 0.07 1.78 3.97 -2.38 -0.01 1.77 16 35 H 0.07 1.02 5.70 -2.39 -0.01 1.00 16 36 H 0.06 1.03 6.64 -2.39 -0.02 1.02 16 37 H 0.10 1.04 6.78 -2.38 -0.02 1.02 16 38 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 39 H 0.13 2.62 3.18 -2.39 -0.01 2.62 16 40 H 0.02 0.91 5.84 -2.39 -0.01 0.89 16 41 H 0.08 2.76 8.11 -2.39 -0.02 2.74 16 42 H 0.00 0.20 8.07 -2.38 -0.02 0.18 16 43 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 45 H 0.01 0.51 6.91 -2.39 -0.02 0.49 16 46 H 0.07 2.84 8.06 -2.39 -0.02 2.82 16 47 H 0.08 2.69 7.11 -2.39 -0.02 2.68 16 48 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 49 H 0.05 0.89 6.70 -2.39 -0.02 0.87 16 50 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.08 0.88 6.76 -2.39 -0.02 0.86 16 52 H 0.03 1.11 5.93 -4.55 -0.03 1.08 16 53 H 0.03 0.67 6.54 -2.39 -0.02 0.66 16 54 H 0.06 1.71 6.31 -14.43 -0.09 1.62 16 Total: -1.00 -64.82 373.90 2.04 -62.78 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.79 Total: 18.35 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 5.68 Total: -6.72 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -6.43 Total: -100.64 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.03 Total: -19.54 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -64.82 2.04 -62.78 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602200336.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.737 kcal (2) G-P(sol) polarization free energy of solvation -64.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds