Wall clock time and date at job start Tue Mar 31 2020 13:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47329 * 2 1 4 4 N 1.46900 * 109.47208 * 119.99624 * 2 1 3 5 5 C 1.46898 * 110.99947 * 73.26423 * 4 2 1 6 6 C 1.50703 * 109.46952 * 66.04912 * 5 4 2 7 7 O 1.21280 * 120.00032 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99679 * 179.97438 * 6 5 4 9 9 C 1.44577 * 118.64561 * 359.73576 * 8 6 5 10 10 C 1.54315 * 109.90575 * 270.85220 * 9 8 6 11 11 C 1.47096 * 110.29289 * 288.75727 * 10 9 8 12 12 C 1.52563 * 114.32493 * 62.73698 * 11 10 9 13 13 C 1.50876 * 109.35645 * 274.97520 * 12 11 10 14 14 C 1.47610 * 118.63865 * 180.02562 * 8 6 5 15 15 C 1.46907 * 111.00202 * 309.31272 * 4 2 1 16 16 C 1.52997 * 109.47515 * 199.70921 * 15 4 2 17 17 C 1.50694 * 115.54711 * 56.81326 * 16 15 4 18 18 H 1.08002 * 120.00532 * 264.42942 * 17 16 15 19 19 C 1.37881 * 119.99795 * 84.42699 * 17 16 15 20 20 N 1.31515 * 120.00162 * 357.89589 * 19 17 16 21 21 Si 1.86805 * 119.99907 * 177.88915 * 19 17 16 22 22 H 1.48493 * 109.47289 * 270.00100 * 21 19 17 23 23 H 1.48504 * 109.46768 * 30.00300 * 21 19 17 24 24 H 1.48501 * 109.47123 * 150.00145 * 21 19 17 25 25 C 1.52996 * 117.49749 * 202.48446 * 16 15 4 26 26 C 1.52998 * 117.49813 * 271.14616 * 16 15 4 27 27 H 1.08995 * 109.47219 * 300.00617 * 1 2 3 28 28 H 1.09003 * 109.46935 * 60.00452 * 1 2 3 29 29 H 1.08997 * 109.47215 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47655 * 239.99617 * 2 1 3 31 31 H 1.08999 * 109.47529 * 183.63125 * 3 2 1 32 32 H 1.09004 * 109.47067 * 303.62492 * 3 2 1 33 33 H 1.08999 * 109.47552 * 63.62291 * 3 2 1 34 34 H 1.08999 * 109.47255 * 186.04816 * 5 4 2 35 35 H 1.08996 * 109.47478 * 306.04975 * 5 4 2 36 36 H 1.08996 * 109.45173 * 30.76320 * 9 8 6 37 37 H 1.09002 * 109.44799 * 150.68351 * 9 8 6 38 38 H 1.09003 * 109.39849 * 168.47140 * 10 9 8 39 39 H 1.08995 * 109.28050 * 48.97409 * 10 9 8 40 40 H 1.08998 * 108.51651 * 301.47814 * 11 10 9 41 41 H 1.09000 * 108.50782 * 183.98589 * 11 10 9 42 42 H 1.09011 * 109.48933 * 155.01187 * 12 11 10 43 43 H 1.08995 * 109.49713 * 34.94398 * 12 11 10 44 44 H 1.09011 * 109.36585 * 331.69715 * 13 12 11 45 45 H 1.09006 * 109.37054 * 212.08429 * 13 12 11 46 46 H 1.08997 * 108.94653 * 258.55036 * 14 8 6 47 47 H 1.08995 * 108.94780 * 17.27285 * 14 8 6 48 48 H 1.09009 * 109.46765 * 79.70841 * 15 4 2 49 49 H 1.08997 * 109.46788 * 319.71689 * 15 4 2 50 50 H 0.96993 * 119.99537 * 356.30547 * 20 19 17 51 51 H 1.09002 * 117.49566 * 215.00165 * 25 16 15 52 52 H 1.09001 * 117.50149 * 0.02562 * 25 16 15 53 53 H 1.08998 * 117.50048 * 359.97438 * 26 16 15 54 54 H 1.09001 * 117.49632 * 144.97540 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.8228 -2.1438 1.0867 6 6 2.6923 -2.6842 -0.0192 7 8 3.4060 -1.9342 -0.6509 8 7 2.6774 -4.0011 -0.3056 9 6 1.8209 -4.8695 0.4705 10 6 2.5809 -5.3860 1.7102 11 6 3.6117 -6.3558 1.3092 12 6 4.7007 -5.7795 0.4095 13 6 4.2372 -5.8206 -1.0257 14 6 3.5413 -4.4981 -1.3944 15 6 1.3760 -0.1664 2.4107 16 6 2.2206 -0.5264 3.6346 17 6 3.6503 -0.0515 3.6000 18 1 4.4317 -0.7147 3.2592 19 6 3.9611 1.2299 4.0033 20 7 3.0050 2.0511 4.3789 21 14 5.7402 1.7993 4.0164 22 1 6.3452 1.5024 5.3395 23 1 6.4959 1.0864 2.9552 24 1 5.7936 3.2619 3.7646 25 6 1.5185 -0.5556 4.9936 26 6 1.9371 -1.8647 4.3197 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1281 1.4432 -0.0651 32 1 1.6246 1.9747 -0.8557 33 1 1.7307 1.9373 0.9206 34 1 2.0938 -2.6214 2.0283 35 1 0.7770 -2.3522 0.8614 36 1 0.9404 -4.3151 0.7953 37 1 1.5107 -5.7157 -0.1426 38 1 1.8786 -5.8669 2.3912 39 1 3.0542 -4.5458 2.2182 40 1 3.1272 -7.1782 0.7830 41 1 4.0809 -6.7539 2.2089 42 1 5.6103 -6.3709 0.5150 43 1 4.9020 -4.7477 0.6972 44 1 3.5373 -6.6461 -1.1561 45 1 5.0966 -5.9712 -1.6791 46 1 2.9331 -4.6550 -2.2851 47 1 4.3019 -3.7486 -1.6129 48 1 0.3827 -0.6036 2.5134 49 1 1.2897 0.9175 2.3348 50 1 2.0773 1.7739 4.3214 51 1 2.0908 -0.2313 5.8628 52 1 0.4548 -0.3187 5.0158 53 1 1.1486 -2.4885 3.8988 54 1 2.7848 -2.4018 4.7452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602825496.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:14 Heat of formation + Delta-G solvation = -26.733581 kcal Electronic energy + Delta-G solvation = -30502.548659 eV Core-core repulsion = 26860.253911 eV Total energy + Delta-G solvation = -3642.294749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.55523 -39.82701 -38.50337 -37.41082 -34.85767 -33.89318 -33.73003 -32.52883 -29.47936 -28.06934 -27.69876 -26.89934 -26.32333 -25.44557 -23.15955 -22.63088 -21.64342 -21.31334 -20.53674 -19.63357 -18.52996 -18.06281 -17.37888 -16.91358 -16.57079 -16.03965 -15.66130 -15.64112 -15.45997 -15.37621 -14.99141 -14.86191 -14.44732 -14.30749 -14.12897 -14.08906 -13.95799 -13.57782 -13.26701 -13.20758 -13.02632 -12.77338 -12.70563 -12.61014 -12.51030 -12.33203 -12.14248 -12.11832 -12.00272 -11.82551 -11.62954 -11.56130 -11.50981 -11.29396 -11.21480 -10.58005 -10.45887 -10.28268 -10.05062 -9.56344 -8.86256 -8.37997 -6.05716 1.50260 1.59511 1.66926 1.76106 2.02540 2.61756 3.00520 3.36598 3.44500 3.57184 3.85345 3.92922 3.99983 4.01886 4.05859 4.12776 4.18693 4.20746 4.30438 4.38395 4.42179 4.42774 4.50988 4.56563 4.61681 4.62355 4.69562 4.71818 4.75290 4.81596 4.84818 4.86676 4.89758 4.96892 5.00695 5.03453 5.04131 5.13632 5.22048 5.26341 5.27623 5.33435 5.38496 5.38880 5.49916 5.51213 5.61929 5.74362 6.18880 6.33407 6.41081 6.47089 6.55668 6.91556 7.30149 7.67600 9.02977 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011870 B = 0.004797 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.412326 B = 5835.506335 C = 6346.665984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.075 3.925 3 C -0.128 4.128 4 N -0.515 5.515 5 C 0.044 3.956 6 C 0.509 3.491 7 O -0.565 6.565 8 N -0.602 5.602 9 C 0.106 3.894 10 C -0.140 4.140 11 C -0.113 4.113 12 C -0.120 4.120 13 C -0.119 4.119 14 C 0.110 3.890 15 C 0.117 3.883 16 C 0.006 3.994 17 C -0.536 4.536 18 H 0.022 0.978 19 C -0.017 4.017 20 N -0.939 5.939 21 Si 1.097 2.903 22 H -0.276 1.276 23 H -0.290 1.290 24 H -0.286 1.286 25 C -0.182 4.182 26 C -0.174 4.174 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.032 0.968 32 H 0.074 0.926 33 H 0.037 0.963 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.036 0.964 40 H 0.083 0.917 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.028 0.972 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.056 0.944 48 H 0.027 0.973 49 H 0.048 0.952 50 H 0.265 0.735 51 H 0.056 0.944 52 H 0.083 0.917 53 H 0.098 0.902 54 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.600 -18.733 -10.441 22.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.033 4.033 3 C -0.186 4.186 4 N -0.239 5.239 5 C -0.087 4.087 6 C 0.297 3.703 7 O -0.443 6.443 8 N -0.336 5.336 9 C -0.017 4.017 10 C -0.179 4.179 11 C -0.150 4.150 12 C -0.158 4.158 13 C -0.157 4.157 14 C -0.012 4.012 15 C -0.010 4.010 16 C 0.005 3.995 17 C -0.575 4.575 18 H 0.040 0.960 19 C -0.216 4.216 20 N -0.577 5.577 21 Si 0.923 3.077 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.220 4.220 26 C -0.211 4.211 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.122 0.878 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.125 0.875 38 H 0.114 0.886 39 H 0.055 0.945 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.046 0.954 44 H 0.109 0.891 45 H 0.102 0.898 46 H 0.095 0.905 47 H 0.074 0.926 48 H 0.045 0.955 49 H 0.066 0.934 50 H 0.075 0.925 51 H 0.074 0.926 52 H 0.101 0.899 53 H 0.116 0.884 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.725 -17.000 -10.372 20.467 hybrid contribution -1.323 -0.859 -0.017 1.578 sum -6.049 -17.859 -10.389 21.528 Atomic orbital electron populations 1.22419 0.96312 1.02030 1.02638 1.21762 0.93069 0.95120 0.93314 1.21662 1.00266 0.95833 1.00802 1.61472 1.59109 1.01574 1.01718 1.22069 0.97768 0.90519 0.98345 1.20984 0.82667 0.82634 0.83999 1.90629 1.42533 1.58356 1.52820 1.47782 1.43627 1.06416 1.35765 1.21725 0.92225 0.95066 0.92670 1.21233 0.99254 0.99361 0.98050 1.20414 0.96117 0.98718 0.99793 1.21081 0.99062 0.99923 0.95740 1.21721 1.01041 0.96300 0.96606 1.21860 0.93897 0.96722 0.88736 1.21459 0.92441 0.98045 0.89099 1.19169 0.94688 0.96525 0.89113 1.21233 0.91521 0.99491 1.45232 0.95995 1.26509 1.07725 0.93686 0.93686 1.70795 1.01383 1.38554 1.46918 0.83163 0.72281 0.75557 0.76715 1.20244 1.21586 1.21184 1.22670 0.98672 1.02647 0.98019 1.22890 1.01790 0.90600 1.05790 0.93066 0.90725 0.92029 0.90240 0.94892 0.90752 0.94439 0.87834 0.90725 0.89793 0.87498 0.88604 0.94535 0.89879 0.92564 0.91229 0.95354 0.89113 0.89845 0.90530 0.92558 0.95546 0.93362 0.92455 0.92568 0.89881 0.88374 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.04 8.49 71.98 0.61 -4.43 16 2 C 0.08 2.77 2.50 44.91 0.11 2.89 16 3 C -0.13 -5.05 9.28 71.98 0.67 -4.39 16 4 N -0.52 -21.09 3.83 -875.52 -3.36 -24.45 16 5 C 0.04 1.45 3.66 85.56 0.31 1.77 16 6 C 0.51 17.33 7.22 87.66 0.63 17.96 16 7 O -0.57 -24.33 13.72 -3.03 -0.04 -24.37 16 8 N -0.60 -14.81 2.25 -819.36 -1.85 -16.66 16 9 C 0.11 1.80 5.13 87.18 0.45 2.25 16 10 C -0.14 -2.54 5.61 29.20 0.16 -2.37 16 11 C -0.11 -1.83 5.15 28.61 0.15 -1.68 16 12 C -0.12 -2.36 5.51 29.76 0.16 -2.20 16 13 C -0.12 -1.87 5.71 30.21 0.17 -1.70 16 14 C 0.11 2.39 6.10 86.47 0.53 2.92 16 15 C 0.12 5.03 3.34 86.30 0.29 5.32 16 16 C 0.01 0.28 0.86 -52.93 -0.05 0.24 16 17 C -0.54 -30.65 8.57 25.60 0.22 -30.43 16 18 H 0.02 1.34 7.81 -2.91 -0.02 1.31 16 19 C -0.02 -0.99 5.41 84.66 0.46 -0.53 16 20 N -0.94 -56.83 13.50 21.45 0.29 -56.55 16 21 Si 1.10 54.44 29.90 68.60 2.05 56.49 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 23 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 24 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 25 C -0.18 -8.18 8.65 30.62 0.26 -7.91 16 26 C -0.17 -6.99 8.43 30.62 0.26 -6.73 16 27 H 0.05 1.56 6.66 -2.39 -0.02 1.54 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.06 1.55 6.72 -2.39 -0.02 1.54 16 30 H 0.08 3.06 5.79 -2.39 -0.01 3.05 16 31 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.04 1.61 6.29 -2.39 -0.02 1.60 16 34 H 0.10 3.56 4.55 -2.39 -0.01 3.55 16 35 H 0.08 2.03 5.74 -2.39 -0.01 2.02 16 36 H 0.08 1.33 6.25 -2.39 -0.01 1.32 16 37 H 0.11 1.19 8.06 -2.39 -0.02 1.17 16 38 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.04 0.93 7.28 -2.39 -0.02 0.92 16 40 H 0.08 0.94 7.36 -2.39 -0.02 0.92 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 43 H 0.03 0.79 7.48 -2.39 -0.02 0.77 16 44 H 0.09 0.99 7.32 -2.38 -0.02 0.97 16 45 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 46 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.06 1.61 6.95 -2.39 -0.02 1.60 16 48 H 0.03 1.00 7.30 -2.38 -0.02 0.98 16 49 H 0.05 2.34 5.57 -2.39 -0.01 2.32 16 50 H 0.27 15.84 6.18 -92.71 -0.57 15.27 16 51 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 52 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 53 H 0.10 3.22 7.65 -2.39 -0.02 3.20 16 54 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -72.56 394.65 3.56 -69.00 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 1.06 Total: 25.55 kcal Atomic # 6 Polarization: -34.43 SS G_CDS: 5.40 Total: -29.03 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -4.91 Total: -97.65 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.04 Total: -24.37 kcal Atomic # 14 Polarization: 54.44 SS G_CDS: 2.05 Total: 56.49 kcal Total: -72.56 3.56 -69.00 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602825496.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.267 kcal (2) G-P(sol) polarization free energy of solvation -72.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds