Wall clock time and date at job start Tue Mar 31 2020 13:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46920 * 2 1 4 4 N 1.46899 * 109.47286 * 119.99813 * 2 1 3 5 5 C 1.46897 * 110.99928 * 291.95455 * 4 2 1 6 6 C 1.50693 * 109.47285 * 77.89226 * 5 4 2 7 7 H 1.07999 * 120.00291 * 5.41284 * 6 5 4 8 8 C 1.37887 * 119.99665 * 185.40858 * 6 5 4 9 9 N 1.31511 * 120.00222 * 359.97438 * 8 6 5 10 10 Si 1.86809 * 119.99605 * 179.72582 * 8 6 5 11 11 H 1.48497 * 109.46757 * 270.27228 * 10 8 6 12 12 H 1.48494 * 109.47184 * 30.27352 * 10 8 6 13 13 H 1.48498 * 109.46762 * 150.27690 * 10 8 6 14 14 C 1.46902 * 110.99882 * 167.99553 * 4 2 1 15 15 N 1.46497 * 109.47333 * 280.50526 * 14 4 2 16 16 C 1.46772 * 124.34839 * 99.52863 * 15 14 4 17 17 C 1.54477 * 105.47372 * 197.01820 * 16 15 14 18 18 C 1.53006 * 110.96875 * 92.74104 * 17 16 15 19 19 C 1.52996 * 110.97019 * 216.46516 * 17 16 15 20 20 C 1.54889 * 110.75905 * 296.06632 * 19 17 16 21 21 C 1.54469 * 104.10112 * 203.89244 * 20 19 17 22 22 C 1.53873 * 106.68288 * 23.34208 * 21 20 19 23 23 C 1.54267 * 106.60111 * 0.15604 * 22 21 20 24 24 C 1.54631 * 101.76578 * 334.58789 * 17 16 15 25 25 C 1.34416 * 124.35243 * 279.23493 * 15 14 4 26 26 O 1.21286 * 124.94129 * 359.57162 * 25 15 14 27 27 H 1.09001 * 109.46839 * 308.15329 * 1 2 3 28 28 H 1.08995 * 109.46899 * 68.15661 * 1 2 3 29 29 H 1.09001 * 109.46501 * 188.15629 * 1 2 3 30 30 H 1.08998 * 109.46874 * 240.00532 * 2 1 3 31 31 H 1.08993 * 109.47034 * 171.42121 * 3 2 1 32 32 H 1.09000 * 109.46878 * 291.42506 * 3 2 1 33 33 H 1.09000 * 109.46877 * 51.42229 * 3 2 1 34 34 H 1.09006 * 109.47290 * 317.88859 * 5 4 2 35 35 H 1.09004 * 109.46586 * 197.89374 * 5 4 2 36 36 H 0.97002 * 119.99475 * 359.72287 * 9 8 6 37 37 H 1.08997 * 109.46960 * 40.50977 * 14 4 2 38 38 H 1.08998 * 109.46834 * 160.50392 * 14 4 2 39 39 H 1.08997 * 110.24514 * 316.02214 * 16 15 14 40 40 H 1.09001 * 110.24146 * 78.01679 * 16 15 14 41 41 H 1.08996 * 109.47085 * 60.69878 * 18 17 16 42 42 H 1.09002 * 109.46939 * 180.70123 * 18 17 16 43 43 H 1.09003 * 109.47049 * 300.70013 * 18 17 16 44 44 H 1.09007 * 110.67067 * 59.30479 * 19 17 16 45 45 H 1.08995 * 110.48224 * 322.42139 * 20 19 17 46 46 H 1.09005 * 110.48321 * 85.06248 * 20 19 17 47 47 H 1.09001 * 109.85583 * 264.10453 * 21 20 19 48 48 H 1.08997 * 110.11750 * 142.72644 * 21 20 19 49 49 H 1.09005 * 110.02887 * 240.87438 * 22 21 20 50 50 H 1.08995 * 110.03507 * 119.44642 * 22 21 20 51 51 H 1.09004 * 110.48641 * 217.70943 * 23 22 21 52 52 H 1.08999 * 110.48276 * 95.06919 * 23 22 21 53 53 H 1.09001 * 110.48861 * 143.47386 * 24 17 16 54 54 H 1.08998 * 110.48451 * 265.98981 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0198 -0.6924 1.1994 5 6 1.7118 0.0755 2.4132 6 6 0.2615 -0.1161 2.7745 7 1 -0.3466 -0.8127 2.2165 8 6 -0.2893 0.5979 3.8177 9 7 0.4513 1.4457 4.4976 10 14 -2.0892 0.3660 4.2606 11 1 -2.9170 1.3254 3.4864 12 1 -2.5044 -1.0219 3.9343 13 1 -2.2768 0.6102 5.7133 14 6 3.4600 -0.9640 1.0994 15 7 3.6773 -2.1425 0.2567 16 6 4.0636 -2.0889 -1.1583 17 6 3.7515 -3.4920 -1.7241 18 6 2.3469 -3.5384 -2.3291 19 6 4.8021 -3.9135 -2.7533 20 6 4.7735 -2.9730 -3.9837 21 6 5.3750 -3.8253 -5.1229 22 6 5.1716 -5.2983 -4.7273 23 6 4.4502 -5.2929 -3.3637 24 6 3.8371 -4.3703 -0.4543 25 6 3.5541 -3.4118 0.6814 26 8 3.2567 -3.7408 1.8103 27 1 -0.3633 0.6349 0.8081 28 1 -0.3633 0.3824 -0.9539 29 1 -0.3632 -1.0173 0.1458 30 1 1.8933 -0.5137 -0.8900 31 1 3.1191 1.4464 0.1533 32 1 1.8072 1.9102 -0.9567 33 1 1.5569 1.9987 0.8034 34 1 1.9047 1.1331 2.2328 35 1 2.3397 -0.2736 3.2330 36 1 1.3860 1.5657 4.2678 37 1 3.9621 -0.1035 0.6572 38 1 3.8647 -1.1492 2.0943 39 1 3.4779 -1.3326 -1.6808 40 1 5.1280 -1.8731 -1.2507 41 1 2.2793 -2.8201 -3.1461 42 1 2.1479 -4.5405 -2.7090 43 1 1.6129 -3.2878 -1.5632 44 1 5.7951 -3.9320 -2.3041 45 1 3.7489 -2.6883 -4.2224 46 1 5.3838 -2.0883 -3.8018 47 1 6.4386 -3.6096 -5.2248 48 1 4.8596 -3.6158 -6.0602 49 1 6.1365 -5.7974 -4.6372 50 1 4.5575 -5.8038 -5.4726 51 1 4.8250 -6.0971 -2.7305 52 1 3.3729 -5.3853 -3.5017 53 1 3.0873 -5.1608 -0.4859 54 1 4.8352 -4.7963 -0.3518 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780427049.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:20 Heat of formation + Delta-G solvation = -59.186541 kcal Electronic energy + Delta-G solvation = -29733.370683 eV Core-core repulsion = 26089.668668 eV Total energy + Delta-G solvation = -3643.702015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.88832 -39.66716 -39.10365 -37.08707 -35.07671 -34.31779 -32.13686 -30.13234 -29.53816 -28.67630 -28.43186 -27.93030 -27.21566 -25.38903 -24.32829 -22.50812 -21.43701 -20.79303 -19.95799 -19.52063 -18.84113 -17.65863 -17.40485 -17.19879 -16.69404 -16.17130 -15.86388 -15.65685 -15.38160 -15.22942 -15.13178 -14.84227 -14.68435 -14.23388 -14.07284 -13.79567 -13.76819 -13.50418 -13.28219 -13.06732 -12.95730 -12.85930 -12.76302 -12.44193 -12.34949 -12.28274 -12.19246 -11.99481 -11.98460 -11.95957 -11.75999 -11.66923 -11.48283 -11.20733 -11.16842 -11.00339 -10.82461 -10.64861 -10.49766 -9.80947 -9.05483 -8.56184 -6.24943 1.49730 1.59219 1.61034 1.77113 2.07707 2.56096 3.19597 3.21360 3.29996 3.40479 3.66240 3.83259 3.94671 3.99633 4.04055 4.04252 4.18059 4.21599 4.29391 4.41583 4.46595 4.55711 4.63403 4.67539 4.70349 4.73684 4.78168 4.79072 4.82534 4.86558 4.88063 4.90905 4.93487 4.96321 5.06738 5.09233 5.11251 5.14201 5.22882 5.24020 5.26302 5.41679 5.45945 5.50539 5.52218 5.63446 5.67246 5.71128 5.91740 6.06830 6.20376 6.49657 6.52232 6.69929 7.25820 7.48442 8.78238 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.021331 B = 0.003209 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.298019 B = 8724.656035 C = 9004.599838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.092 3.908 3 C -0.173 4.173 4 N -0.550 5.550 5 C 0.197 3.803 6 C -0.572 4.572 7 H 0.053 0.947 8 C -0.040 4.040 9 N -0.943 5.943 10 Si 1.114 2.886 11 H -0.268 1.268 12 H -0.279 1.279 13 H -0.286 1.286 14 C 0.291 3.709 15 N -0.605 5.605 16 C 0.107 3.893 17 C -0.046 4.046 18 C -0.140 4.140 19 C -0.068 4.068 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.133 4.133 25 C 0.505 3.495 26 O -0.590 6.590 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.034 0.966 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.034 0.966 34 H -0.004 1.004 35 H -0.024 1.024 36 H 0.252 0.748 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.030 0.970 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.064 0.936 49 H 0.063 0.937 50 H 0.063 0.937 51 H 0.067 0.933 52 H 0.074 0.926 53 H 0.101 0.899 54 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.209 -9.608 -24.846 28.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.016 4.016 3 C -0.231 4.231 4 N -0.277 5.277 5 C 0.070 3.930 6 C -0.611 4.611 7 H 0.072 0.928 8 C -0.236 4.236 9 N -0.582 5.582 10 Si 0.937 3.063 11 H -0.193 1.193 12 H -0.204 1.204 13 H -0.212 1.212 14 C 0.079 3.921 15 N -0.339 5.339 16 C -0.015 4.015 17 C -0.047 4.047 18 C -0.197 4.197 19 C -0.086 4.086 20 C -0.160 4.160 21 C -0.162 4.162 22 C -0.162 4.162 23 C -0.162 4.162 24 C -0.173 4.173 25 C 0.294 3.706 26 O -0.470 6.470 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.013 0.987 35 H -0.006 1.006 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.050 0.950 44 H 0.104 0.896 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.082 0.918 48 H 0.083 0.917 49 H 0.081 0.919 50 H 0.082 0.918 51 H 0.085 0.915 52 H 0.092 0.908 53 H 0.120 0.880 54 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.636 -9.661 -23.174 26.893 hybrid contribution 1.625 0.420 -0.125 1.683 sum 11.261 -9.241 -23.299 27.478 Atomic orbital electron populations 1.21903 0.94961 1.00991 1.01070 1.21600 0.96084 0.92084 0.91810 1.22344 1.00373 0.98187 1.02238 1.61863 1.13938 1.48475 1.03384 1.19556 0.96171 0.90869 0.86402 1.22293 0.96074 1.25229 1.17459 0.92847 1.27155 1.09657 0.93329 0.93481 1.70893 1.08486 1.36780 1.42044 0.82957 0.70390 0.76649 0.76351 1.19313 1.20409 1.21179 1.21610 0.89427 0.87169 0.93847 1.48516 1.67136 1.05397 1.12837 1.22531 1.01370 0.98752 0.78846 1.21379 0.97471 0.92379 0.93470 1.21940 0.93716 1.03566 1.00470 1.22059 0.96960 0.95763 0.93857 1.22543 1.01786 0.97865 0.93817 1.22147 1.00942 0.94681 0.98383 1.22116 1.00467 0.96766 0.96818 1.22542 1.01194 0.96310 0.96151 1.22473 1.05499 0.97465 0.91865 1.21751 0.74728 0.85034 0.89101 1.90706 1.50110 1.81595 1.24591 0.92766 0.91605 0.94716 0.89559 0.92746 0.90017 0.94654 0.98659 1.00641 0.93831 0.90554 0.93246 0.89771 0.89058 0.90322 0.90337 0.95042 0.89636 0.90894 0.91063 0.91809 0.91740 0.91853 0.91794 0.91468 0.90786 0.88047 0.86193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.10 7.84 71.98 0.56 -4.54 16 2 C 0.09 3.31 2.87 44.92 0.13 3.43 16 3 C -0.17 -5.68 8.29 71.98 0.60 -5.08 16 4 N -0.55 -24.15 4.54 -887.81 -4.03 -28.18 16 5 C 0.20 10.53 3.88 85.56 0.33 10.86 16 6 C -0.57 -33.31 6.67 25.60 0.17 -33.14 16 7 H 0.05 3.16 6.19 -2.91 -0.02 3.14 16 8 C -0.04 -2.34 5.46 84.66 0.46 -1.88 16 9 N -0.94 -59.47 13.65 21.45 0.29 -59.18 16 10 Si 1.11 52.89 29.90 68.60 2.05 54.94 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 14 C 0.29 10.88 5.52 170.81 0.94 11.83 16 15 N -0.61 -18.64 3.02 -829.03 -2.50 -21.15 16 16 C 0.11 2.06 5.77 86.83 0.50 2.56 16 17 C -0.05 -0.74 0.45 -51.12 -0.02 -0.77 16 18 C -0.14 -2.33 7.82 71.98 0.56 -1.77 16 19 C -0.07 -0.74 2.02 -9.51 -0.02 -0.75 16 20 C -0.12 -1.16 5.77 31.74 0.18 -0.98 16 21 C -0.12 -1.10 6.81 31.39 0.21 -0.89 16 22 C -0.12 -1.13 6.80 31.32 0.21 -0.92 16 23 C -0.12 -1.27 5.91 31.67 0.19 -1.08 16 24 C -0.13 -2.91 5.71 30.59 0.17 -2.73 16 25 C 0.50 17.68 8.03 87.90 0.71 18.38 16 26 O -0.59 -28.26 17.72 -3.05 -0.05 -28.31 16 27 H 0.05 2.50 5.81 -2.39 -0.01 2.48 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.03 1.44 7.64 -2.39 -0.02 1.42 16 30 H 0.09 2.60 6.10 -2.39 -0.01 2.58 16 31 H 0.05 1.64 6.35 -2.39 -0.02 1.62 16 32 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.03 1.42 6.41 -2.39 -0.02 1.41 16 34 H 0.00 -0.22 5.10 -2.38 -0.01 -0.23 16 35 H -0.02 -1.47 7.51 -2.38 -0.02 -1.49 16 36 H 0.25 16.09 7.18 -92.71 -0.67 15.43 16 37 H 0.08 2.40 6.14 -2.39 -0.01 2.39 16 38 H 0.05 2.16 7.47 -2.39 -0.02 2.14 16 39 H 0.08 1.52 6.35 -2.39 -0.02 1.50 16 40 H 0.09 1.38 7.89 -2.39 -0.02 1.36 16 41 H 0.08 1.06 6.43 -2.39 -0.02 1.05 16 42 H 0.08 1.10 5.98 -2.39 -0.01 1.08 16 43 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.09 0.89 8.11 -2.38 -0.02 0.87 16 45 H 0.07 0.71 6.05 -2.39 -0.01 0.70 16 46 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 47 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 50 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 52 H 0.07 0.78 5.65 -2.39 -0.01 0.77 16 53 H 0.10 2.19 7.91 -2.39 -0.02 2.18 16 54 H 0.12 2.10 7.87 -2.39 -0.02 2.09 16 Total: -1.00 -77.05 393.18 2.63 -74.43 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.97 Total: 14.92 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 5.90 Total: -7.46 kcal Atomic # 7 Polarization: -102.27 SS G_CDS: -6.24 Total: -108.51 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.05 Total: -28.31 kcal Atomic # 14 Polarization: 52.89 SS G_CDS: 2.05 Total: 54.94 kcal Total: -77.05 2.63 -74.43 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780427049.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.241 kcal (2) G-P(sol) polarization free energy of solvation -77.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds