Wall clock time and date at job start Tue Mar 31 2020 13:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47348 * 2 1 4 4 N 1.46897 * 109.47064 * 120.00448 * 2 1 3 5 5 C 1.46899 * 111.00487 * 72.23703 * 4 2 1 6 6 C 1.50692 * 109.47282 * 66.04182 * 5 4 2 7 7 H 1.07995 * 120.00550 * 0.02562 * 6 5 4 8 8 C 1.37883 * 120.00065 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99945 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00051 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46747 * 60.00300 * 10 8 6 12 12 H 1.48497 * 109.46721 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47272 * 299.99999 * 10 8 6 14 14 C 1.46897 * 111.00133 * 308.27668 * 4 2 1 15 15 N 1.46499 * 109.47441 * 209.07570 * 14 4 2 16 16 C 1.46768 * 124.34941 * 80.77639 * 15 14 4 17 17 C 1.54480 * 105.47330 * 162.96943 * 16 15 14 18 18 C 1.52999 * 110.96954 * 267.29276 * 17 16 15 19 19 C 1.53008 * 110.99647 * 143.54766 * 17 16 15 20 20 C 1.54886 * 110.75194 * 176.55832 * 19 17 16 21 21 C 1.54460 * 104.10180 * 203.89423 * 20 19 17 22 22 C 1.53877 * 106.68610 * 23.34149 * 21 20 19 23 23 C 1.54272 * 106.59375 * 0.16139 * 22 21 20 24 24 C 1.54621 * 101.76470 * 25.41732 * 17 16 15 25 25 C 1.34738 * 124.30258 * 260.71806 * 15 14 4 26 26 O 1.21282 * 125.11878 * 0.43885 * 25 15 14 27 27 H 1.09002 * 109.47059 * 307.16311 * 1 2 3 28 28 H 1.08995 * 109.47351 * 67.16739 * 1 2 3 29 29 H 1.08996 * 109.47586 * 187.17054 * 1 2 3 30 30 H 1.09001 * 109.47175 * 239.99831 * 2 1 3 31 31 H 1.09003 * 109.47110 * 175.85855 * 3 2 1 32 32 H 1.08994 * 109.46908 * 295.85753 * 3 2 1 33 33 H 1.08996 * 109.46836 * 55.85751 * 3 2 1 34 34 H 1.09002 * 109.47478 * 186.05061 * 5 4 2 35 35 H 1.09006 * 109.46972 * 306.04106 * 5 4 2 36 36 H 0.97001 * 120.00302 * 180.02562 * 9 8 6 37 37 H 1.09003 * 109.47122 * 89.07803 * 14 4 2 38 38 H 1.09007 * 109.47104 * 329.08076 * 14 4 2 39 39 H 1.09003 * 110.24695 * 43.97020 * 16 15 14 40 40 H 1.09000 * 110.24118 * 281.97576 * 16 15 14 41 41 H 1.08997 * 109.46635 * 173.07943 * 18 17 16 42 42 H 1.08995 * 109.47580 * 293.08047 * 18 17 16 43 43 H 1.08999 * 109.47092 * 53.08458 * 18 17 16 44 44 H 1.08995 * 110.66887 * 299.79008 * 19 17 16 45 45 H 1.09005 * 110.48863 * 322.41954 * 20 19 17 46 46 H 1.09000 * 110.49206 * 85.06484 * 20 19 17 47 47 H 1.09004 * 109.86251 * 264.10229 * 21 20 19 48 48 H 1.09000 * 110.13081 * 142.72471 * 21 20 19 49 49 H 1.08997 * 110.03418 * 240.87784 * 22 21 20 50 50 H 1.08999 * 110.03713 * 119.44136 * 22 21 20 51 51 H 1.09008 * 110.48435 * 217.70903 * 23 22 21 52 52 H 1.08999 * 110.48714 * 95.07165 * 23 22 21 53 53 H 1.08995 * 110.49025 * 93.87999 * 24 17 16 54 54 H 1.09000 * 110.48912 * 216.38918 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 1.8007 -2.1415 1.0969 6 6 2.6525 -2.7011 -0.0130 7 1 3.2929 -2.0461 -0.5850 8 6 2.6144 -4.0495 -0.2985 9 7 1.8342 -4.8472 0.3976 10 14 3.6709 -4.7432 -1.6740 11 1 5.1023 -4.4791 -1.3799 12 1 3.4485 -6.2078 -1.7783 13 1 3.3013 -4.0943 -2.9575 14 6 1.3941 -0.1501 2.4128 15 7 2.3113 -0.3026 3.5449 16 6 3.4316 0.6015 3.8308 17 6 3.8208 0.3238 5.2997 18 6 3.0884 1.2739 6.2492 19 6 5.3355 0.4208 5.4932 20 6 5.7120 0.2267 6.9830 21 6 7.0774 0.9354 7.1216 22 6 7.1569 1.9678 5.9833 23 6 5.8363 1.8555 5.1936 24 6 3.3313 -1.1310 5.4859 25 6 2.2331 -1.2906 4.4577 26 8 1.4062 -2.1778 4.4565 27 1 -0.3633 0.6208 0.8190 28 1 -0.3634 0.3987 -0.9471 29 1 -0.3634 -1.0196 0.1283 30 1 1.8933 -0.5139 -0.8900 31 1 3.1275 1.4433 0.0742 32 1 1.7386 1.9344 -0.9247 33 1 1.6173 1.9773 0.8505 34 1 2.0726 -2.6176 2.0390 35 1 0.7499 -2.3359 0.8818 36 1 1.8077 -5.7959 0.1971 37 1 0.4703 -0.6909 2.6182 38 1 1.1714 0.9067 2.2653 39 1 3.1185 1.6390 3.7132 40 1 4.2706 0.3828 3.1703 41 1 3.2839 0.9792 7.2802 42 1 3.4426 2.2922 6.0891 43 1 2.0169 1.2271 6.0549 44 1 5.8508 -0.3071 4.8666 45 1 4.9714 0.6993 7.6284 46 1 5.8034 -0.8336 7.2185 47 1 7.8837 0.2084 7.0231 48 1 7.1431 1.4379 8.0866 49 1 8.0015 1.7418 5.3325 50 1 7.2609 2.9713 6.3959 51 1 6.0183 1.9809 4.1262 52 1 5.1160 2.5929 5.5480 53 1 4.1412 -1.8340 5.2914 54 1 2.9360 -1.2748 6.4916 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780427051.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:23 Heat of formation + Delta-G solvation = -65.654342 kcal Electronic energy + Delta-G solvation = -29622.478342 eV Core-core repulsion = 25978.495862 eV Total energy + Delta-G solvation = -3643.982479 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.82023 -39.62174 -38.95637 -37.06492 -34.94270 -34.25910 -32.16679 -30.18243 -29.61257 -28.60750 -28.39389 -28.00681 -27.24494 -25.61864 -24.00309 -22.45997 -21.43733 -20.76422 -19.91219 -19.52397 -18.38685 -17.86417 -17.21058 -17.05408 -16.59740 -16.38550 -16.06861 -15.68971 -15.33254 -15.07936 -14.88744 -14.67112 -14.59013 -14.28099 -14.10856 -13.96799 -13.79139 -13.56921 -13.22779 -13.13104 -12.83217 -12.75806 -12.72702 -12.61925 -12.44432 -12.30285 -12.22522 -12.11396 -11.96022 -11.80166 -11.74248 -11.63406 -11.52197 -11.32904 -11.23230 -11.14438 -11.00913 -10.68519 -10.62721 -9.74000 -9.04847 -8.20006 -6.32569 1.35565 1.40200 1.48073 1.60741 2.15390 2.37374 3.10861 3.31163 3.36661 3.41678 3.72550 3.84989 3.98987 4.04576 4.08692 4.16545 4.20928 4.28067 4.39669 4.49060 4.52546 4.63268 4.66090 4.67484 4.76919 4.79212 4.79758 4.81607 4.85077 4.90730 4.93532 4.97585 4.99937 5.05103 5.10041 5.17149 5.22217 5.24701 5.25745 5.26445 5.28349 5.39637 5.47923 5.52186 5.52673 5.59120 5.64957 5.67310 5.73061 6.03424 6.21869 6.41204 6.59546 6.85590 7.26053 7.37101 8.90576 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.012247 B = 0.003799 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.763232 B = 7367.748764 C = 7925.496252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.078 3.922 3 C -0.126 4.126 4 N -0.542 5.542 5 C 0.220 3.780 6 C -0.520 4.520 7 H 0.066 0.934 8 C -0.003 4.003 9 N -0.937 5.937 10 Si 0.971 3.029 11 H -0.267 1.267 12 H -0.286 1.286 13 H -0.262 1.262 14 C 0.289 3.711 15 N -0.603 5.603 16 C 0.118 3.882 17 C -0.047 4.047 18 C -0.136 4.136 19 C -0.074 4.074 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.119 4.119 24 C -0.136 4.136 25 C 0.498 3.502 26 O -0.593 6.593 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.020 0.980 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.064 0.936 34 H -0.012 1.012 35 H -0.044 1.044 36 H 0.262 0.738 37 H 0.021 0.979 38 H 0.117 0.883 39 H 0.101 0.899 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.044 0.956 44 H 0.064 0.936 45 H 0.084 0.916 46 H 0.059 0.941 47 H 0.055 0.945 48 H 0.071 0.929 49 H 0.056 0.944 50 H 0.072 0.928 51 H 0.064 0.936 52 H 0.085 0.915 53 H 0.097 0.903 54 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.500 20.760 11.841 25.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.031 4.031 3 C -0.183 4.183 4 N -0.268 5.268 5 C 0.094 3.906 6 C -0.559 4.559 7 H 0.084 0.916 8 C -0.201 4.201 9 N -0.578 5.578 10 Si 0.795 3.205 11 H -0.192 1.192 12 H -0.211 1.211 13 H -0.187 1.187 14 C 0.077 3.923 15 N -0.336 5.336 16 C -0.004 4.004 17 C -0.048 4.048 18 C -0.192 4.192 19 C -0.093 4.093 20 C -0.159 4.159 21 C -0.162 4.162 22 C -0.161 4.161 23 C -0.156 4.156 24 C -0.176 4.176 25 C 0.287 3.713 26 O -0.474 6.474 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.006 0.994 35 H -0.026 1.026 36 H 0.070 0.930 37 H 0.039 0.961 38 H 0.135 0.865 39 H 0.119 0.881 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.063 0.937 44 H 0.082 0.918 45 H 0.102 0.898 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.090 0.910 49 H 0.075 0.925 50 H 0.091 0.909 51 H 0.083 0.917 52 H 0.103 0.897 53 H 0.115 0.885 54 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.483 20.251 11.822 24.936 hybrid contribution -0.821 -1.836 -0.908 2.207 sum 7.662 18.415 10.914 22.736 Atomic orbital electron populations 1.22393 0.97677 1.00219 1.03010 1.21691 0.92646 0.96023 0.92726 1.21764 1.01412 0.92657 1.02500 1.62042 1.57930 1.04663 1.02172 1.19212 0.92547 0.83735 0.95131 1.21430 1.24560 0.93206 1.16659 0.91580 1.26022 0.97106 0.97499 0.99457 1.70168 1.40505 1.04801 1.42309 0.85412 0.79027 0.76897 0.79126 1.19184 1.21121 1.18690 1.21724 0.87952 1.00163 0.82417 1.48555 1.31582 1.28523 1.24924 1.22313 0.88067 0.94255 0.95734 1.21417 0.96542 0.92747 0.94068 1.21924 0.98978 0.99411 0.98921 1.22055 0.91315 0.98333 0.97552 1.22558 0.97540 1.00504 0.95345 1.22154 0.97013 0.97919 0.99083 1.22116 0.97505 0.99529 0.96979 1.22491 0.97245 0.95633 1.00262 1.22473 0.96660 0.99648 0.98832 1.21847 0.85347 0.79893 0.84231 1.90707 1.42721 1.36294 1.77677 0.91594 0.90416 0.96122 0.91621 0.92362 0.90590 0.91668 0.99385 1.02616 0.92956 0.96132 0.86546 0.88055 0.91827 0.90447 0.89510 0.93680 0.91757 0.89763 0.92267 0.92603 0.91044 0.92472 0.90930 0.91745 0.89671 0.88471 0.87162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.98 8.53 71.98 0.61 -5.37 16 2 C 0.08 2.86 2.75 44.91 0.12 2.99 16 3 C -0.13 -3.23 9.14 71.98 0.66 -2.57 16 4 N -0.54 -23.71 4.53 -887.83 -4.02 -27.73 16 5 C 0.22 12.74 4.45 85.55 0.38 13.12 16 6 C -0.52 -31.02 8.34 25.60 0.21 -30.80 16 7 H 0.07 3.77 7.21 -2.91 -0.02 3.75 16 8 C 0.00 -0.20 5.46 84.66 0.46 0.27 16 9 N -0.94 -61.28 13.29 21.45 0.28 -60.99 16 10 Si 0.97 46.37 29.54 68.60 2.03 48.40 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 13 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 14 C 0.29 10.95 4.36 170.81 0.75 11.69 16 15 N -0.60 -21.11 3.18 -828.55 -2.64 -23.75 16 16 C 0.12 2.85 5.99 86.83 0.52 3.37 16 17 C -0.05 -0.92 0.45 -51.12 -0.02 -0.94 16 18 C -0.14 -1.96 7.76 71.98 0.56 -1.40 16 19 C -0.07 -1.21 2.03 -9.50 -0.02 -1.23 16 20 C -0.12 -1.69 5.94 31.73 0.19 -1.50 16 21 C -0.12 -1.54 6.81 31.39 0.21 -1.33 16 22 C -0.12 -1.49 6.80 31.32 0.21 -1.27 16 23 C -0.12 -1.53 5.73 31.67 0.18 -1.35 16 24 C -0.14 -3.76 5.72 30.58 0.18 -3.58 16 25 C 0.50 20.03 7.57 87.85 0.66 20.69 16 26 O -0.59 -31.27 16.86 -3.04 -0.05 -31.32 16 27 H 0.07 1.94 6.98 -2.39 -0.02 1.92 16 28 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.02 0.86 6.45 -2.39 -0.02 0.85 16 30 H 0.07 2.80 6.62 -2.39 -0.02 2.79 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.40 6.49 -2.39 -0.02 1.39 16 34 H -0.01 -0.80 6.94 -2.39 -0.02 -0.82 16 35 H -0.04 -2.81 6.41 -2.38 -0.02 -2.82 16 36 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 37 H 0.02 0.93 7.39 -2.39 -0.02 0.92 16 38 H 0.12 3.38 5.51 -2.38 -0.01 3.36 16 39 H 0.10 1.84 7.91 -2.39 -0.02 1.82 16 40 H 0.06 1.70 7.89 -2.39 -0.02 1.68 16 41 H 0.08 0.94 6.30 -2.39 -0.02 0.93 16 42 H 0.09 0.89 6.20 -2.39 -0.01 0.88 16 43 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.06 1.31 8.09 -2.39 -0.02 1.29 16 45 H 0.08 0.98 5.73 -2.38 -0.01 0.97 16 46 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 48 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 52 H 0.08 0.87 5.99 -2.39 -0.01 0.86 16 53 H 0.10 2.78 7.86 -2.39 -0.02 2.76 16 54 H 0.11 2.66 7.91 -2.39 -0.02 2.64 16 Total: -1.00 -81.04 400.13 2.33 -78.71 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.86 Total: 15.90 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 5.87 Total: 0.78 kcal Atomic # 7 Polarization: -106.10 SS G_CDS: -6.37 Total: -112.47 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.05 Total: -31.32 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -81.04 2.33 -78.71 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780427051.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.055 kcal (2) G-P(sol) polarization free energy of solvation -81.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds