Wall clock time and date at job start Tue Mar 31 2020 13:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47075 * 2 1 4 4 N 1.46898 * 109.46718 * 119.99903 * 2 1 3 5 5 C 1.46900 * 110.99876 * 288.85536 * 4 2 1 6 6 C 1.50701 * 109.47145 * 163.75130 * 5 4 2 7 7 H 1.07998 * 119.99918 * 359.13323 * 6 5 4 8 8 C 1.37882 * 120.00015 * 179.12914 * 6 5 4 9 9 N 1.31511 * 120.00172 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00037 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47050 * 269.99927 * 10 8 6 12 12 H 1.48506 * 109.47254 * 29.99366 * 10 8 6 13 13 H 1.48500 * 109.47297 * 149.99676 * 10 8 6 14 14 C 1.46897 * 111.00087 * 164.90719 * 4 2 1 15 15 N 1.46502 * 109.46956 * 278.94854 * 14 4 2 16 16 C 1.46770 * 124.34620 * 89.99567 * 15 14 4 17 17 C 1.54482 * 105.47014 * 197.01800 * 16 15 14 18 18 C 1.54627 * 101.76730 * 334.58686 * 17 16 15 19 19 H 1.08995 * 110.48437 * 266.11919 * 18 17 16 20 20 C 1.53001 * 110.48541 * 143.61115 * 18 17 16 21 21 C 1.52996 * 109.46885 * 179.97438 * 20 18 17 22 22 C 1.53001 * 109.46995 * 179.97438 * 21 20 18 23 23 C 1.53001 * 109.47110 * 59.99990 * 22 21 20 24 24 C 1.52994 * 109.47075 * 300.00248 * 23 22 21 25 25 C 1.52997 * 109.47198 * 60.00027 * 20 18 17 26 26 C 1.34415 * 124.35501 * 269.70297 * 15 14 4 27 27 O 1.21284 * 124.93460 * 359.55930 * 26 15 14 28 28 H 1.08997 * 109.47093 * 299.78695 * 1 2 3 29 29 H 1.09001 * 109.46922 * 59.79034 * 1 2 3 30 30 H 1.09003 * 109.46807 * 179.78510 * 1 2 3 31 31 H 1.08993 * 109.47117 * 239.99626 * 2 1 3 32 32 H 1.09001 * 109.46669 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46768 * 299.99701 * 3 2 1 34 34 H 1.08992 * 109.47103 * 59.99419 * 3 2 1 35 35 H 1.09000 * 109.47230 * 43.75378 * 5 4 2 36 36 H 1.09000 * 109.47263 * 283.75027 * 5 4 2 37 37 H 0.97003 * 120.00633 * 180.02562 * 9 8 6 38 38 H 1.08995 * 109.47225 * 38.94856 * 14 4 2 39 39 H 1.09001 * 109.47928 * 158.95059 * 14 4 2 40 40 H 1.08996 * 110.24874 * 316.01766 * 16 15 14 41 41 H 1.09001 * 110.24444 * 78.02148 * 16 15 14 42 42 H 1.08996 * 110.96807 * 92.70554 * 17 16 15 43 43 H 1.08999 * 110.96771 * 216.46548 * 17 16 15 44 44 H 1.09002 * 109.46561 * 299.99661 * 20 18 17 45 45 H 1.08996 * 109.47538 * 299.99572 * 21 20 18 46 46 H 1.09010 * 109.47329 * 59.99740 * 21 20 18 47 47 H 1.08998 * 109.47200 * 299.99596 * 22 21 20 48 48 H 1.09008 * 109.47016 * 179.97438 * 22 21 20 49 49 H 1.08997 * 109.46933 * 179.97438 * 23 22 21 50 50 H 1.09002 * 109.46611 * 60.00134 * 23 22 21 51 51 H 1.09008 * 109.47035 * 299.99775 * 24 23 22 52 52 H 1.09001 * 109.47222 * 180.02562 * 24 23 22 53 53 H 1.08998 * 109.47143 * 299.99622 * 25 20 18 54 54 H 1.08992 * 109.47333 * 59.99891 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.7772 0.1095 2.4061 6 6 1.9129 -0.7648 3.6260 7 1 2.1413 -1.8146 3.5153 8 6 1.7457 -0.2245 4.8835 9 7 1.8646 -0.9874 5.9482 10 14 1.3501 1.5910 5.0750 11 1 2.6134 2.3642 5.1822 12 1 0.5830 2.0579 3.8923 13 1 0.5396 1.7943 6.3026 14 6 3.4435 -1.0293 1.0686 15 7 3.5851 -2.2517 0.2738 16 6 3.7293 -2.2778 -1.1866 17 6 3.4078 -3.7293 -1.6066 18 6 3.7507 -4.5135 -0.3188 19 1 4.7751 -4.8836 -0.3591 20 6 2.7715 -5.6723 -0.1208 21 6 3.1320 -6.4317 1.1576 22 6 2.1524 -7.5901 1.3560 23 6 2.2352 -8.5389 0.1586 24 6 1.8748 -7.7794 -1.1197 25 6 2.8554 -6.6212 -1.3179 26 6 3.6051 -3.4932 0.7886 27 8 3.5169 -3.7570 1.9691 28 1 -0.3633 0.5105 0.8919 29 1 -0.3633 0.5171 -0.8881 30 1 -0.3633 -1.0277 -0.0039 31 1 1.8934 -0.5139 -0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 0.7711 0.5272 2.3687 36 1 2.5052 0.9192 2.4566 37 1 1.7466 -0.6075 6.8328 38 1 3.9663 -0.2112 0.5732 39 1 3.8719 -1.1878 2.0583 40 1 3.0239 -1.5867 -1.6478 41 1 4.7502 -2.0207 -1.4694 42 1 2.3532 -3.8374 -1.8599 43 1 4.0410 -4.0448 -2.4358 44 1 1.7576 -5.2808 -0.0376 45 1 4.1458 -6.8231 1.0741 46 1 3.0726 -5.7558 2.0108 47 1 1.1387 -7.1984 1.4398 48 1 2.4095 -8.1314 2.2666 49 1 1.5376 -9.3643 0.3002 50 1 3.2490 -8.9306 0.0749 51 1 0.8610 -7.3877 -1.0360 52 1 1.9334 -8.4554 -1.9728 53 1 2.5988 -6.0805 -2.2289 54 1 3.8693 -7.0125 -1.4010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853491855.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:31 Heat of formation + Delta-G solvation = -68.254636 kcal Electronic energy + Delta-G solvation = -29688.951413 eV Core-core repulsion = 26044.856176 eV Total energy + Delta-G solvation = -3644.095237 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.68415 -39.59410 -38.73689 -37.18886 -34.84427 -34.27749 -32.54119 -31.56216 -30.80679 -29.12218 -28.04072 -27.78650 -25.82464 -24.05462 -23.66700 -23.10509 -21.71120 -20.66281 -20.62019 -19.88009 -19.06660 -17.73123 -17.46204 -16.93496 -16.43038 -16.05027 -15.82124 -15.55755 -15.24722 -15.07984 -14.91974 -14.84157 -14.60617 -14.46887 -14.09186 -14.04068 -13.94967 -13.56527 -13.28441 -13.07594 -13.01645 -12.97185 -12.85812 -12.74582 -12.46903 -12.22972 -12.18857 -12.11441 -12.09707 -11.93202 -11.81146 -11.75113 -11.46174 -11.35627 -11.32063 -11.18543 -10.82356 -10.79222 -10.22348 -9.66234 -8.97252 -8.25941 -6.29904 1.28988 1.32730 1.43261 1.73825 2.21854 2.32625 3.05311 3.26589 3.43591 3.61807 3.70791 3.94258 3.95816 4.02094 4.10055 4.15730 4.25418 4.29036 4.36362 4.40780 4.46345 4.53927 4.55751 4.63793 4.67511 4.71416 4.72476 4.77384 4.79344 4.84018 4.87310 4.90660 4.92467 5.03322 5.06098 5.09533 5.10970 5.23802 5.25553 5.29380 5.33777 5.34856 5.38679 5.39924 5.45848 5.56482 5.61501 5.64210 5.75165 6.04840 6.33920 6.42320 6.73688 6.82287 7.32535 7.44649 8.92382 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013318 B = 0.004029 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.871181 B = 6948.788511 C = 8184.716285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.069 3.931 3 C -0.180 4.180 4 N -0.554 5.554 5 C 0.187 3.813 6 C -0.514 4.514 7 H 0.024 0.976 8 C 0.001 3.999 9 N -0.954 5.954 10 Si 0.951 3.049 11 H -0.265 1.265 12 H -0.243 1.243 13 H -0.283 1.283 14 C 0.302 3.698 15 N -0.612 5.612 16 C 0.092 3.908 17 C -0.110 4.110 18 C -0.108 4.108 19 H 0.118 0.882 20 C -0.058 4.058 21 C -0.127 4.127 22 C -0.120 4.120 23 C -0.114 4.114 24 C -0.119 4.119 25 C -0.102 4.102 26 C 0.499 3.501 27 O -0.573 6.573 28 H 0.035 0.965 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.041 0.959 35 H 0.034 0.966 36 H -0.007 1.007 37 H 0.264 0.736 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.130 0.870 44 H 0.044 0.956 45 H 0.064 0.936 46 H 0.040 0.960 47 H 0.042 0.958 48 H 0.053 0.947 49 H 0.066 0.934 50 H 0.069 0.931 51 H 0.052 0.948 52 H 0.083 0.917 53 H 0.086 0.914 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.348 -5.760 -25.387 26.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.039 4.039 3 C -0.238 4.238 4 N -0.281 5.281 5 C 0.060 3.940 6 C -0.552 4.552 7 H 0.042 0.958 8 C -0.195 4.195 9 N -0.595 5.595 10 Si 0.774 3.226 11 H -0.190 1.190 12 H -0.167 1.167 13 H -0.208 1.208 14 C 0.091 3.909 15 N -0.347 5.347 16 C -0.029 4.029 17 C -0.147 4.147 18 C -0.130 4.130 19 H 0.136 0.864 20 C -0.077 4.077 21 C -0.164 4.164 22 C -0.157 4.157 23 C -0.151 4.151 24 C -0.156 4.156 25 C -0.139 4.139 26 C 0.288 3.712 27 O -0.452 6.452 28 H 0.054 0.946 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.114 0.886 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.011 0.989 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.148 0.852 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.059 0.941 47 H 0.061 0.939 48 H 0.071 0.929 49 H 0.084 0.916 50 H 0.088 0.912 51 H 0.070 0.930 52 H 0.102 0.898 53 H 0.105 0.895 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.030 -6.252 -24.514 25.479 hybrid contribution 0.129 1.355 1.758 2.223 sum 3.159 -4.897 -22.756 23.491 Atomic orbital electron populations 1.21775 0.94556 1.01348 1.01612 1.21973 0.96216 0.92987 0.92682 1.22437 1.01195 0.97509 1.02680 1.61714 1.17568 1.45810 1.02958 1.19752 0.95591 0.91347 0.87287 1.21386 1.46728 0.96135 0.90986 0.95808 1.25968 0.94982 1.03355 0.95170 1.70129 1.52327 1.38365 0.98725 0.85667 0.79225 0.79099 0.78608 1.18987 1.16684 1.20839 1.21433 0.89139 0.85703 0.94659 1.48565 1.71223 1.05683 1.09208 1.22489 1.03109 0.99430 0.77888 1.22734 1.04127 0.91610 0.96238 1.22040 1.02699 0.94278 0.93949 0.86441 1.20890 0.96891 0.93859 0.96110 1.21700 0.99234 0.97147 0.98332 1.21521 0.98579 0.96667 0.98980 1.21524 1.02130 0.97345 0.94117 1.21555 0.98959 0.97456 0.97650 1.21572 1.00550 0.95420 0.96371 1.21816 0.74468 0.85408 0.89542 1.90735 1.51180 1.82842 1.20409 0.94569 0.89570 0.93732 0.88622 0.92595 0.89535 0.94022 0.94816 0.98915 0.92702 0.90673 0.93368 0.89332 0.88953 0.89671 0.85207 0.93698 0.91771 0.94109 0.93884 0.92862 0.91554 0.91220 0.92961 0.89820 0.89531 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 9.25 71.98 0.67 -3.32 16 2 C 0.07 2.08 2.85 44.92 0.13 2.21 16 3 C -0.18 -4.69 8.42 71.98 0.61 -4.08 16 4 N -0.55 -23.21 4.46 -887.82 -3.96 -27.17 16 5 C 0.19 9.25 2.33 85.56 0.20 9.45 16 6 C -0.51 -32.37 8.88 25.60 0.23 -32.15 16 7 H 0.02 1.77 8.04 -2.91 -0.02 1.75 16 8 C 0.00 0.08 5.47 84.66 0.46 0.55 16 9 N -0.95 -64.81 13.96 21.45 0.30 -64.51 16 10 Si 0.95 46.19 27.45 68.60 1.88 48.08 16 11 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.24 -10.75 6.57 99.48 0.65 -10.10 16 13 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 14 C 0.30 11.94 5.42 170.81 0.93 12.86 16 15 N -0.61 -20.26 3.12 -829.03 -2.59 -22.85 16 16 C 0.09 1.74 7.13 86.83 0.62 2.36 16 17 C -0.11 -1.65 5.59 31.65 0.18 -1.47 16 18 C -0.11 -2.62 2.49 -10.80 -0.03 -2.65 16 19 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 20 C -0.06 -1.46 1.66 -10.80 -0.02 -1.47 16 21 C -0.13 -3.87 4.97 30.59 0.15 -3.71 16 22 C -0.12 -3.20 5.92 30.59 0.18 -3.02 16 23 C -0.11 -2.14 5.92 30.59 0.18 -1.96 16 24 C -0.12 -1.90 5.93 30.61 0.18 -1.72 16 25 C -0.10 -1.59 4.98 30.61 0.15 -1.44 16 26 C 0.50 19.16 7.43 87.90 0.65 19.81 16 27 O -0.57 -30.21 14.96 -3.04 -0.05 -30.26 16 28 H 0.04 1.22 6.50 -2.39 -0.02 1.20 16 29 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.10 2.37 5.35 -2.39 -0.01 2.35 16 32 H 0.06 1.39 6.72 -2.39 -0.02 1.37 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.04 1.27 6.61 -2.39 -0.02 1.26 16 35 H 0.03 1.66 5.26 -2.39 -0.01 1.65 16 36 H -0.01 -0.32 6.56 -2.39 -0.02 -0.34 16 37 H 0.26 16.62 8.31 -92.71 -0.77 15.85 16 38 H 0.08 2.42 6.44 -2.39 -0.02 2.40 16 39 H 0.05 2.46 6.85 -2.39 -0.02 2.44 16 40 H 0.09 1.44 5.82 -2.39 -0.01 1.43 16 41 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.08 1.28 7.76 -2.39 -0.02 1.26 16 43 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.04 1.71 5.65 -2.38 -0.01 1.69 16 47 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 49 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 52 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 53 H 0.09 0.98 7.16 -2.39 -0.02 0.97 16 54 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -87.07 394.52 1.86 -85.21 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.80 Total: 21.27 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 5.47 Total: -9.77 kcal Atomic # 7 Polarization: -108.28 SS G_CDS: -6.25 Total: -114.53 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.05 Total: -30.26 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.88 Total: 48.08 kcal Total: -87.07 1.86 -85.21 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853491855.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.960 kcal (2) G-P(sol) polarization free energy of solvation -87.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds