Wall clock time and date at job start Tue Mar 31 2020 13:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47150 * 2 1 4 4 N 1.46904 * 109.47473 * 119.99961 * 2 1 3 5 5 C 1.46906 * 110.99714 * 292.79904 * 4 2 1 6 6 C 1.50702 * 109.46512 * 160.15352 * 5 4 2 7 7 H 1.07995 * 120.00519 * 4.70352 * 6 5 4 8 8 C 1.37879 * 119.99508 * 184.69742 * 6 5 4 9 9 N 1.31519 * 120.00164 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99957 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.46948 * 90.00123 * 10 8 6 12 12 H 1.48497 * 109.46998 * 210.00358 * 10 8 6 13 13 H 1.48499 * 109.47018 * 330.00282 * 10 8 6 14 14 C 1.46901 * 111.00198 * 168.84348 * 4 2 1 15 15 N 1.46496 * 109.46985 * 278.95664 * 14 4 2 16 16 C 1.46765 * 124.35394 * 90.00358 * 15 14 4 17 17 C 1.54477 * 105.47448 * 163.00146 * 16 15 14 18 18 H 1.09003 * 110.96383 * 143.57245 * 17 16 15 19 19 C 1.52997 * 110.96875 * 267.29196 * 17 16 15 20 20 C 1.52997 * 109.46996 * 180.02562 * 19 17 16 21 21 C 1.53007 * 109.46970 * 179.97438 * 20 19 17 22 22 C 1.52995 * 109.47296 * 300.00408 * 21 20 19 23 23 C 1.52997 * 109.47445 * 59.99882 * 22 21 20 24 24 C 1.52997 * 109.46996 * 300.00260 * 23 22 21 25 25 C 1.54621 * 101.76564 * 25.41788 * 17 16 15 26 26 C 1.34425 * 124.34873 * 270.01993 * 15 14 4 27 27 O 1.21279 * 124.93831 * 0.42825 * 26 15 14 28 28 H 1.09002 * 109.46831 * 300.04557 * 1 2 3 29 29 H 1.08992 * 109.47075 * 60.04838 * 1 2 3 30 30 H 1.08998 * 109.46835 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47009 * 240.00070 * 2 1 3 32 32 H 1.08999 * 109.47291 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46881 * 300.00111 * 3 2 1 34 34 H 1.09002 * 109.47107 * 60.00131 * 3 2 1 35 35 H 1.08997 * 109.46899 * 280.15238 * 5 4 2 36 36 H 1.08997 * 109.46815 * 40.15394 * 5 4 2 37 37 H 0.97001 * 120.00114 * 179.97438 * 9 8 6 38 38 H 1.08997 * 109.46976 * 158.95482 * 14 4 2 39 39 H 1.09000 * 109.46566 * 38.95332 * 14 4 2 40 40 H 1.08999 * 110.24273 * 43.99231 * 16 15 14 41 41 H 1.09006 * 110.31365 * 282.04119 * 16 15 14 42 42 H 1.08997 * 109.46742 * 60.00226 * 19 17 16 43 43 H 1.08994 * 109.47319 * 300.00330 * 20 19 17 44 44 H 1.08997 * 109.47207 * 60.00490 * 20 19 17 45 45 H 1.09001 * 109.46981 * 179.97438 * 21 20 19 46 46 H 1.08998 * 109.46763 * 60.00792 * 21 20 19 47 47 H 1.08997 * 109.47106 * 299.99590 * 22 21 20 48 48 H 1.09003 * 109.46724 * 179.97438 * 22 21 20 49 49 H 1.08994 * 109.47319 * 179.97438 * 23 22 21 50 50 H 1.09008 * 109.46844 * 59.99448 * 23 22 21 51 51 H 1.09001 * 109.47301 * 299.99318 * 24 23 22 52 52 H 1.09004 * 109.47509 * 179.97438 * 24 23 22 53 53 H 1.08996 * 110.49120 * 93.87979 * 25 17 16 54 54 H 1.08998 * 110.48434 * 216.52427 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 1.6942 0.0657 2.4149 6 6 1.7546 -0.8506 3.6097 7 1 2.0827 -1.8726 3.4905 8 6 1.3910 -0.3842 4.8552 9 7 0.9910 0.8603 5.0004 10 14 1.4665 -1.5198 6.3365 11 1 2.8079 -1.4236 6.9661 12 1 0.4282 -1.1200 7.3201 13 1 1.2233 -2.9184 5.9009 14 6 3.4638 -0.9462 1.1082 15 7 3.6993 -2.1394 0.2916 16 6 3.8911 -2.1227 -1.1634 17 6 4.5240 -3.4882 -1.5114 18 1 4.1508 -3.8590 -2.4660 19 6 6.0513 -3.3970 -1.5220 20 6 6.6414 -4.7649 -1.8703 21 6 8.1687 -4.6736 -1.8815 22 6 8.6106 -3.6465 -2.9258 23 6 8.0205 -2.2786 -2.5774 24 6 6.4933 -2.3699 -2.5663 25 6 4.0303 -4.3716 -0.3424 26 6 3.7671 -3.3905 0.7786 27 8 3.6355 -3.6892 1.9466 28 1 -0.3633 0.5146 0.8896 29 1 -0.3633 0.5130 -0.8904 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.4128 0.8755 2.5413 36 1 0.6904 0.4812 2.3259 37 1 0.7349 1.1883 5.8766 38 1 3.8688 -1.1042 2.1077 39 1 3.9549 -0.0886 0.6484 40 1 4.5632 -1.3123 -1.4459 41 1 2.9326 -2.0110 -1.6702 42 1 6.4036 -3.0889 -0.5376 43 1 6.3262 -5.4967 -1.1266 44 1 6.2890 -5.0726 -2.8548 45 1 8.5891 -5.6483 -2.1292 46 1 8.5214 -4.3659 -0.8971 47 1 8.2579 -3.9544 -3.9101 48 1 9.6986 -3.5812 -2.9333 49 1 8.3357 -1.5469 -3.3211 50 1 8.3732 -1.9708 -1.5930 51 1 6.1405 -2.6777 -3.5506 52 1 6.0727 -1.3955 -2.3176 53 1 3.1127 -4.8913 -0.6180 54 1 4.8013 -5.0852 -0.0516 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872570267.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:35 Heat of formation + Delta-G solvation = -72.488113 kcal Electronic energy + Delta-G solvation = -29405.798650 eV Core-core repulsion = 25761.519836 eV Total energy + Delta-G solvation = -3644.278814 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.66511 -39.53015 -38.98761 -37.06512 -34.90636 -34.13233 -32.22243 -31.67872 -30.52521 -28.75991 -28.12854 -27.95875 -25.89237 -24.37545 -23.72342 -23.31896 -21.28532 -20.72095 -20.57373 -19.92544 -18.68949 -17.56982 -17.44460 -16.83447 -16.62244 -16.25033 -15.84203 -15.50586 -15.18880 -15.08329 -14.87938 -14.72355 -14.59287 -14.27638 -14.19932 -13.98056 -13.82355 -13.55599 -13.32681 -13.11263 -12.96991 -12.91680 -12.82234 -12.73797 -12.46772 -12.36120 -12.17922 -12.14562 -12.12103 -12.07867 -11.88089 -11.69373 -11.34774 -11.33232 -11.21879 -10.84368 -10.77818 -10.65102 -10.57541 -9.68038 -8.96133 -8.21494 -6.28258 1.32318 1.33018 1.47463 1.73747 2.17022 2.38326 3.08959 3.36967 3.46531 3.50869 3.66198 3.93127 4.00143 4.06241 4.12971 4.16924 4.25820 4.28061 4.43534 4.46824 4.51084 4.56036 4.60603 4.68580 4.71412 4.74054 4.75754 4.77386 4.84410 4.86106 4.91165 4.92573 4.92747 5.03024 5.05199 5.10225 5.24992 5.27547 5.28358 5.35746 5.38384 5.40191 5.41473 5.43966 5.49857 5.57789 5.63005 5.70145 5.75417 6.09933 6.34272 6.38500 6.71615 6.88197 7.36791 7.40633 8.87619 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.014609 B = 0.003534 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.117364 B = 7920.864508 C = 8899.661091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.073 3.927 3 C -0.176 4.176 4 N -0.556 5.556 5 C 0.222 3.778 6 C -0.518 4.518 7 H 0.043 0.957 8 C 0.010 3.990 9 N -0.928 5.928 10 Si 0.953 3.047 11 H -0.275 1.275 12 H -0.272 1.272 13 H -0.281 1.281 14 C 0.303 3.697 15 N -0.604 5.604 16 C 0.096 3.904 17 C -0.076 4.076 18 H 0.132 0.868 19 C -0.076 4.076 20 C -0.112 4.112 21 C -0.122 4.122 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.112 4.112 25 C -0.140 4.140 26 C 0.499 3.501 27 O -0.591 6.591 28 H 0.031 0.969 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.095 0.905 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.033 0.967 35 H -0.031 1.031 36 H 0.021 0.979 37 H 0.264 0.736 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.043 0.957 43 H 0.058 0.942 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.044 0.956 47 H 0.072 0.928 48 H 0.059 0.941 49 H 0.069 0.931 50 H 0.044 0.956 51 H 0.083 0.917 52 H 0.063 0.937 53 H 0.115 0.885 54 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.082 -6.979 -24.438 28.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.035 4.035 3 C -0.234 4.234 4 N -0.282 5.282 5 C 0.096 3.904 6 C -0.557 4.557 7 H 0.061 0.939 8 C -0.188 4.188 9 N -0.569 5.569 10 Si 0.779 3.221 11 H -0.201 1.201 12 H -0.197 1.197 13 H -0.207 1.207 14 C 0.091 3.909 15 N -0.338 5.338 16 C -0.025 4.025 17 C -0.095 4.095 18 H 0.149 0.851 19 C -0.095 4.095 20 C -0.149 4.149 21 C -0.160 4.160 22 C -0.154 4.154 23 C -0.159 4.159 24 C -0.149 4.149 25 C -0.180 4.180 26 C 0.288 3.712 27 O -0.471 6.471 28 H 0.050 0.950 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.113 0.887 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.052 0.948 35 H -0.013 1.013 36 H 0.039 0.961 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.063 0.937 47 H 0.091 0.909 48 H 0.077 0.923 49 H 0.087 0.913 50 H 0.063 0.937 51 H 0.101 0.899 52 H 0.082 0.918 53 H 0.134 0.866 54 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 11.708 -7.380 -23.638 27.392 hybrid contribution 0.204 0.574 1.832 1.930 sum 11.912 -6.806 -21.807 25.763 Atomic orbital electron populations 1.21766 0.94746 1.01356 1.01314 1.21864 0.96016 0.92621 0.92955 1.22389 1.00924 0.97938 1.02197 1.61936 1.14334 1.48799 1.03146 1.19214 0.94539 0.90715 0.85936 1.21513 1.43043 0.97832 0.93317 0.93873 1.25658 0.95160 0.96527 1.01450 1.70035 1.46374 1.16070 1.24420 0.85630 0.78101 0.78996 0.79357 1.20084 1.19666 1.20656 1.21439 0.88986 0.86225 0.94243 1.48511 1.69484 1.06370 1.09428 1.22578 1.01581 0.99949 0.78407 1.22241 0.95509 0.92693 0.99046 0.85051 1.21099 0.92819 0.96735 0.98818 1.21588 0.95038 0.95792 1.02496 1.21543 0.96043 0.99494 0.98902 1.21517 1.00022 0.94637 0.99175 1.21538 0.95810 0.97537 1.01048 1.21620 0.95435 0.98494 0.99349 1.22460 1.04653 0.97395 0.93516 1.21837 0.74670 0.85208 0.89473 1.90722 1.52707 1.82039 1.21634 0.95033 0.89799 0.93410 0.88724 0.92768 0.89763 0.94809 1.01307 0.96053 0.92690 0.93156 0.91353 0.88737 0.90031 0.93860 0.92311 0.89935 0.91392 0.93709 0.90900 0.92264 0.91270 0.93691 0.89862 0.91799 0.86644 0.87657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 9.18 71.98 0.66 -3.79 16 2 C 0.07 2.44 2.88 44.91 0.13 2.57 16 3 C -0.18 -5.37 8.53 71.98 0.61 -4.75 16 4 N -0.56 -24.36 4.46 -887.80 -3.96 -28.32 16 5 C 0.22 12.07 3.26 85.56 0.28 12.35 16 6 C -0.52 -32.13 8.53 25.60 0.22 -31.91 16 7 H 0.04 2.87 7.81 -2.91 -0.02 2.85 16 8 C 0.01 0.62 5.46 84.65 0.46 1.08 16 9 N -0.93 -57.73 13.29 21.45 0.28 -57.45 16 10 Si 0.95 49.23 29.54 68.60 2.03 51.26 16 11 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 12 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 13 H -0.28 -14.86 7.11 99.48 0.71 -14.15 16 14 C 0.30 12.14 5.40 170.81 0.92 13.07 16 15 N -0.60 -19.64 3.12 -829.04 -2.59 -22.23 16 16 C 0.10 1.88 6.00 86.83 0.52 2.41 16 17 C -0.08 -1.14 2.68 -9.74 -0.03 -1.16 16 18 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 19 C -0.08 -1.12 1.76 -10.80 -0.02 -1.14 16 20 C -0.11 -1.39 5.05 30.60 0.15 -1.24 16 21 C -0.12 -1.59 5.92 30.59 0.18 -1.41 16 22 C -0.12 -1.30 5.92 30.59 0.18 -1.12 16 23 C -0.12 -1.52 5.92 30.59 0.18 -1.34 16 24 C -0.11 -1.30 4.97 30.59 0.15 -1.15 16 25 C -0.14 -3.14 6.27 30.58 0.19 -2.95 16 26 C 0.50 18.39 8.02 87.90 0.71 19.10 16 27 O -0.59 -29.83 17.60 -3.03 -0.05 -29.88 16 28 H 0.03 1.24 6.30 -2.39 -0.02 1.22 16 29 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.09 2.57 5.94 -2.39 -0.01 2.55 16 32 H 0.05 1.56 6.49 -2.39 -0.02 1.54 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.03 1.25 6.73 -2.39 -0.02 1.24 16 35 H -0.03 -1.76 7.33 -2.39 -0.02 -1.78 16 36 H 0.02 1.24 5.89 -2.39 -0.01 1.23 16 37 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 38 H 0.05 2.52 7.04 -2.39 -0.02 2.50 16 39 H 0.07 2.36 6.18 -2.39 -0.01 2.34 16 40 H 0.09 1.55 5.82 -2.39 -0.01 1.54 16 41 H 0.08 1.42 6.95 -2.38 -0.02 1.41 16 42 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.06 0.81 6.58 -2.39 -0.02 0.80 16 44 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 46 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.04 0.70 8.14 -2.38 -0.02 0.69 16 51 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 52 H 0.06 0.78 6.14 -2.39 -0.01 0.76 16 53 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 54 H 0.11 2.21 6.35 -2.39 -0.02 2.20 16 Total: -1.00 -79.31 398.94 2.07 -77.24 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 0.86 Total: 10.78 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 5.51 Total: -1.40 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -6.27 Total: -108.00 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.05 Total: -29.88 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 2.03 Total: 51.26 kcal Total: -79.31 2.07 -77.24 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872570267.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.754 kcal (2) G-P(sol) polarization free energy of solvation -79.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds