Wall clock time and date at job start Tue Mar 31 2020 15:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47558 * 2 1 4 4 C 1.53003 * 109.47117 * 119.99633 * 2 1 3 5 5 C 1.52997 * 109.47470 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47285 * 300.00403 * 5 4 2 7 7 H 1.09004 * 109.47133 * 299.99690 * 6 5 4 8 8 C 1.50695 * 109.47651 * 179.97438 * 6 5 4 9 9 O 1.21279 * 120.00447 * 240.00285 * 8 6 5 10 10 N 1.34779 * 120.00002 * 59.99627 * 8 6 5 11 11 C 1.46500 * 120.00524 * 180.02562 * 10 8 6 12 12 C 1.52992 * 109.47740 * 180.02562 * 11 10 8 13 13 H 1.09006 * 109.42913 * 64.92521 * 12 11 10 14 14 C 1.54856 * 109.45413 * 184.86904 * 12 11 10 15 15 C 1.47094 * 110.32374 * 191.30557 * 14 12 11 16 16 C 1.52568 * 114.32617 * 297.19570 * 15 14 12 17 17 C 1.50884 * 109.35880 * 85.01022 * 16 15 14 18 18 C 1.53593 * 109.95380 * 268.02781 * 17 16 15 19 19 N 1.44582 * 109.44720 * 305.00085 * 12 11 10 20 20 C 1.36938 * 118.64485 * 329.20740 * 19 12 11 21 21 H 1.08004 * 119.99289 * 332.91730 * 20 19 12 22 22 C 1.38806 * 120.00349 * 153.19109 * 20 19 12 23 23 N 1.31621 * 119.99973 * 342.83194 * 22 20 19 24 24 Si 1.86796 * 120.00056 * 162.83179 * 22 20 19 25 25 H 1.48507 * 109.47028 * 94.26200 * 24 22 20 26 26 H 1.48500 * 109.46870 * 214.26006 * 24 22 20 27 27 H 1.48499 * 109.47392 * 334.26141 * 24 22 20 28 28 C 1.53003 * 109.47196 * 59.99429 * 6 5 4 29 29 C 1.52995 * 109.47117 * 300.00366 * 28 6 5 30 30 H 1.08999 * 109.47320 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47326 * 299.99954 * 1 2 3 32 32 H 1.09002 * 109.47116 * 60.00443 * 1 2 3 33 33 H 1.08996 * 109.47449 * 300.00422 * 4 2 1 34 34 H 1.08999 * 109.47045 * 59.99808 * 4 2 1 35 35 H 1.08993 * 109.47513 * 179.97438 * 5 4 2 36 36 H 1.08999 * 109.47069 * 59.99914 * 5 4 2 37 37 H 0.97000 * 119.99868 * 0.02562 * 10 8 6 38 38 H 1.08999 * 109.47249 * 59.99688 * 11 10 8 39 39 H 1.09005 * 109.46474 * 300.00206 * 11 10 8 40 40 H 1.09000 * 109.32851 * 311.56545 * 14 12 11 41 41 H 1.08995 * 109.32948 * 71.21512 * 14 12 11 42 42 H 1.09001 * 108.51616 * 58.45533 * 15 14 12 43 43 H 1.09006 * 108.51236 * 176.09892 * 15 14 12 44 44 H 1.08993 * 109.49116 * 204.97844 * 16 15 14 45 45 H 1.09004 * 109.48657 * 325.04879 * 16 15 14 46 46 H 1.08998 * 109.36289 * 28.30596 * 17 16 15 47 47 H 1.08994 * 109.36441 * 148.04669 * 17 16 15 48 48 H 1.09004 * 108.93738 * 280.02248 * 18 17 16 49 49 H 1.09001 * 108.75512 * 161.51602 * 18 17 16 50 50 H 0.96992 * 120.00093 * 179.97438 * 23 22 20 51 51 H 1.08999 * 109.47045 * 60.00558 * 28 6 5 52 52 H 1.09004 * 109.46852 * 180.02562 * 28 6 5 53 53 H 1.09002 * 109.47116 * 180.02562 * 29 28 6 54 54 H 1.09004 * 109.47033 * 299.99630 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5699 -0.7218 1.2491 6 6 4.0795 -1.4434 -0.0001 7 1 3.7158 -2.4710 0.0001 8 6 5.5864 -1.4435 -0.0007 9 8 6.1926 -0.9186 -0.9107 10 7 6.2607 -2.0268 1.0100 11 6 7.7257 -2.0265 1.0098 12 6 8.2362 -2.7479 2.2586 13 1 7.9466 -3.7979 2.2146 14 6 9.7798 -2.6408 2.3214 15 6 10.3131 -3.5444 3.3522 16 6 9.8542 -3.2202 4.7707 17 6 8.5170 -3.8712 5.0248 18 6 7.3838 -2.8960 4.6726 19 7 7.6595 -2.1385 3.4361 20 6 7.3620 -0.8022 3.4049 21 1 7.9147 -0.1411 2.7538 22 6 6.3540 -0.2965 4.2141 23 7 5.4684 -1.1104 4.7485 24 14 6.2544 1.5393 4.5447 25 1 5.3242 2.1676 3.5725 26 1 5.7561 1.7673 5.9249 27 1 7.6036 2.1424 4.3996 28 6 3.5695 -0.7222 -1.2494 29 6 2.0395 -0.7217 -1.2491 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6766 -0.2074 2.1393 34 1 1.6766 -1.7488 1.2494 35 1 3.9332 -1.2351 2.1393 36 1 3.9337 0.3057 1.2488 37 1 5.7760 -2.4468 1.7377 38 1 8.0888 -0.9987 1.0095 39 1 8.0889 -2.5403 0.1197 40 1 10.1998 -2.9109 1.3525 41 1 10.0608 -1.6159 2.5632 42 1 10.0054 -4.5624 3.1130 43 1 11.4018 -3.4976 3.3238 44 1 10.5849 -3.5994 5.4849 45 1 9.7604 -2.1402 4.8845 46 1 8.4292 -4.7680 4.4115 47 1 8.4422 -4.1444 6.0773 48 1 7.2526 -2.1939 5.4960 49 1 6.4617 -3.4625 4.5424 50 1 4.7643 -0.7570 5.3143 51 1 3.9332 0.3053 -1.2497 52 1 3.9322 -1.2366 -2.1394 53 1 1.6762 -0.2083 -2.1394 54 1 1.6758 -1.7493 -1.2489 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969121971.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:37 Heat of formation + Delta-G solvation = -68.522698 kcal Electronic energy + Delta-G solvation = -30045.481502 eV Core-core repulsion = 26401.374642 eV Total energy + Delta-G solvation = -3644.106861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.14209 -39.81815 -38.73477 -35.98099 -35.19139 -33.85824 -32.99251 -32.44622 -31.59466 -28.88917 -27.79508 -26.85677 -25.19322 -23.92817 -23.50631 -22.67297 -21.38838 -20.83712 -20.77800 -20.47775 -18.44664 -17.59501 -17.25737 -16.76792 -16.37029 -16.08149 -15.92602 -15.25313 -15.20931 -15.15021 -15.07262 -14.98076 -14.56247 -14.34260 -13.93385 -13.74527 -13.42228 -13.38682 -13.18358 -13.05948 -13.01585 -12.86215 -12.81780 -12.70179 -12.38982 -12.32407 -12.01506 -11.99161 -11.87206 -11.56176 -11.52558 -11.40097 -11.31430 -11.24482 -11.19443 -11.00195 -10.88512 -10.49715 -10.30721 -9.73592 -8.52902 -7.77175 -5.17267 1.38364 1.45192 1.49230 1.80379 2.51091 2.57329 3.37368 3.61550 3.73532 3.76040 3.80887 4.04771 4.10257 4.18405 4.21028 4.25844 4.30648 4.44262 4.46528 4.51090 4.53764 4.60676 4.61847 4.67423 4.69483 4.82961 4.85335 4.95766 5.01261 5.01484 5.06530 5.08911 5.14193 5.17893 5.25480 5.26398 5.27400 5.27935 5.37349 5.38558 5.43520 5.44256 5.48843 5.56043 5.61101 5.67944 5.73605 5.77763 5.83187 5.92046 6.49509 6.82840 7.29898 7.45737 8.03619 8.41812 9.26239 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.004493 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.513920 B = 6230.080165 C = 7233.211152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 H 0.053 0.947 4 C -0.103 4.103 5 C -0.100 4.100 6 C -0.094 4.094 7 H 0.111 0.889 8 C 0.506 3.494 9 O -0.600 6.600 10 N -0.689 5.689 11 C 0.132 3.868 12 C 0.175 3.825 13 H 0.057 0.943 14 C -0.129 4.129 15 C -0.100 4.100 16 C -0.104 4.104 17 C -0.133 4.133 18 C 0.190 3.810 19 N -0.586 5.586 20 C -0.232 4.232 21 H 0.042 0.958 22 C -0.015 4.015 23 N -0.907 5.907 24 Si 0.917 3.083 25 H -0.298 1.298 26 H -0.293 1.293 27 H -0.287 1.287 28 C -0.092 4.092 29 C -0.103 4.103 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.031 0.969 37 H 0.408 0.592 38 H 0.036 0.964 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.039 0.961 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.041 0.959 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.038 0.962 49 H 0.004 0.996 50 H 0.246 0.754 51 H 0.043 0.957 52 H 0.065 0.935 53 H 0.076 0.924 54 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.073 -6.362 -6.099 9.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 H 0.072 0.928 4 C -0.140 4.140 5 C -0.138 4.138 6 C -0.115 4.115 7 H 0.129 0.871 8 C 0.293 3.707 9 O -0.483 6.483 10 N -0.337 5.337 11 C 0.007 3.993 12 C 0.067 3.933 13 H 0.075 0.925 14 C -0.170 4.170 15 C -0.137 4.137 16 C -0.141 4.141 17 C -0.171 4.171 18 C 0.066 3.934 19 N -0.308 5.308 20 C -0.363 4.363 21 H 0.059 0.941 22 C -0.212 4.212 23 N -0.553 5.553 24 Si 0.749 3.251 25 H -0.225 1.225 26 H -0.220 1.220 27 H -0.213 1.213 28 C -0.131 4.131 29 C -0.140 4.140 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.049 0.951 37 H 0.244 0.756 38 H 0.054 0.946 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.056 0.944 49 H 0.022 0.978 50 H 0.055 0.945 51 H 0.061 0.939 52 H 0.083 0.917 53 H 0.095 0.905 54 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.768 -6.004 -6.590 9.678 hybrid contribution -0.022 1.550 0.995 1.842 sum -3.790 -4.454 -5.595 8.093 Atomic orbital electron populations 1.21773 0.93601 1.02472 1.01911 1.21172 0.96616 0.98874 0.94706 0.92848 1.21523 0.93055 1.01583 0.97871 1.21358 0.97253 0.99024 0.96178 1.21289 0.89653 1.02684 0.97827 0.87058 1.21154 0.91241 0.77022 0.81246 1.90581 1.71615 1.47726 1.38399 1.45769 1.07368 1.56589 1.23966 1.21417 0.80362 0.99730 0.97757 1.20637 0.92322 0.95144 0.85165 0.92515 1.21296 0.96922 0.99593 0.99156 1.20270 0.99947 0.99304 0.94199 1.20913 0.96255 1.00152 0.96803 1.21884 0.96014 0.98602 1.00627 1.20697 0.92743 0.92206 0.87798 1.43742 1.72283 1.06105 1.08715 1.18845 1.10994 0.84782 1.21632 0.94068 1.25052 0.96057 0.97839 1.02242 1.70095 1.15303 1.33184 1.36724 0.86056 0.76964 0.85402 0.76681 1.22543 1.21973 1.21320 1.21282 0.96519 0.99581 0.95673 1.21567 0.93078 1.01666 0.97721 0.91710 0.92936 0.91821 0.92503 0.90404 0.91973 0.95050 0.75565 0.94584 0.91956 0.91047 0.94186 0.91936 0.92088 0.91872 0.94049 0.92135 0.92067 0.94355 0.97809 0.94458 0.93860 0.91652 0.90508 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.19 71.98 0.66 -1.87 16 2 C -0.10 -2.20 2.72 -10.80 -0.03 -2.23 16 3 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 4 C -0.10 -2.76 5.20 30.59 0.16 -2.60 16 5 C -0.10 -3.43 5.10 30.59 0.16 -3.27 16 6 C -0.09 -2.97 2.53 -11.54 -0.03 -3.00 16 7 H 0.11 3.01 8.14 -2.38 -0.02 2.99 16 8 C 0.51 19.96 7.15 87.66 0.63 20.58 16 9 O -0.60 -27.30 15.98 -3.03 -0.05 -27.35 16 10 N -0.69 -27.00 4.61 -463.07 -2.14 -29.14 16 11 C 0.13 5.11 4.52 86.38 0.39 5.50 16 12 C 0.18 6.36 2.19 45.98 0.10 6.46 16 13 H 0.06 1.95 8.07 -2.38 -0.02 1.93 16 14 C -0.13 -4.12 5.06 29.39 0.15 -3.97 16 15 C -0.10 -2.80 5.15 28.61 0.15 -2.65 16 16 C -0.10 -3.25 5.51 29.76 0.16 -3.08 16 17 C -0.13 -4.36 5.71 30.11 0.17 -4.19 16 18 C 0.19 8.04 4.64 86.37 0.40 8.45 16 19 N -0.59 -25.08 1.79 -674.95 -1.20 -26.28 16 20 C -0.23 -11.48 7.66 84.03 0.64 -10.84 16 21 H 0.04 2.21 6.70 -2.91 -0.02 2.19 16 22 C -0.01 -0.76 4.82 84.86 0.41 -0.35 16 23 N -0.91 -47.03 11.16 21.65 0.24 -46.79 16 24 Si 0.92 44.25 29.59 68.60 2.03 46.28 16 25 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 26 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 27 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 28 C -0.09 -2.66 4.49 30.59 0.14 -2.52 16 29 C -0.10 -2.23 5.20 30.59 0.16 -2.07 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.06 2.46 7.57 -2.39 -0.02 2.45 16 36 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.41 16.44 7.50 -92.71 -0.70 15.75 16 38 H 0.04 1.60 6.82 -2.39 -0.02 1.59 16 39 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 40 H 0.07 1.97 8.11 -2.39 -0.02 1.95 16 41 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.06 1.60 7.36 -2.39 -0.02 1.58 16 43 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 44 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.04 1.57 7.48 -2.39 -0.02 1.55 16 46 H 0.06 1.82 7.32 -2.39 -0.02 1.80 16 47 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.04 1.88 6.42 -2.38 -0.02 1.86 16 49 H 0.00 0.17 8.03 -2.39 -0.02 0.16 16 50 H 0.25 12.79 8.31 -92.71 -0.77 12.02 16 51 H 0.04 1.43 8.10 -2.39 -0.02 1.41 16 52 H 0.06 1.86 8.10 -2.38 -0.02 1.84 16 53 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 54 H 0.08 1.46 8.14 -2.38 -0.02 1.45 16 Total: -1.00 -57.63 399.30 3.45 -54.19 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: 0.14 Total: 30.76 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 4.42 Total: -1.66 kcal Atomic # 7 Polarization: -99.12 SS G_CDS: -3.10 Total: -102.22 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.05 Total: -27.35 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -57.63 3.45 -54.19 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969121971.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.337 kcal (2) G-P(sol) polarization free energy of solvation -57.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds