Wall clock time and date at job start Tue Mar 31 2020 15:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46760 * 2 1 4 4 C 1.53005 * 109.46917 * 119.99579 * 2 1 3 5 5 C 1.53005 * 109.46832 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47078 * 300.00138 * 5 4 2 7 7 H 1.09000 * 109.46926 * 300.00026 * 6 5 4 8 8 C 1.50697 * 109.46820 * 180.02562 * 6 5 4 9 9 O 1.21288 * 119.99705 * 239.99639 * 8 6 5 10 10 N 1.34781 * 120.00514 * 60.00095 * 8 6 5 11 11 C 1.46492 * 120.00179 * 179.97438 * 10 8 6 12 12 C 1.53005 * 109.46840 * 179.97438 * 11 10 8 13 13 H 1.08992 * 109.45096 * 295.05037 * 12 11 10 14 14 C 1.54875 * 109.44818 * 175.13019 * 12 11 10 15 15 C 1.47149 * 110.31342 * 168.72869 * 14 12 11 16 16 C 1.52569 * 114.33991 * 62.78187 * 15 14 12 17 17 C 1.50876 * 109.35219 * 274.98744 * 16 15 14 18 18 C 1.53945 * 110.09533 * 91.88817 * 17 16 15 19 19 N 1.44579 * 109.44844 * 55.00128 * 12 11 10 20 20 C 1.36939 * 118.64292 * 30.75729 * 19 12 11 21 21 H 1.07999 * 120.00103 * 27.77100 * 20 19 12 22 22 C 1.38808 * 119.99828 * 207.77789 * 20 19 12 23 23 N 1.31618 * 120.00554 * 14.61163 * 22 20 19 24 24 Si 1.86801 * 119.99942 * 194.61279 * 22 20 19 25 25 H 1.48503 * 109.47209 * 89.99583 * 24 22 20 26 26 H 1.48500 * 109.47240 * 209.99824 * 24 22 20 27 27 H 1.48503 * 109.47241 * 329.99754 * 24 22 20 28 28 C 1.52994 * 109.47094 * 60.00186 * 6 5 4 29 29 C 1.52996 * 109.47555 * 299.99780 * 28 6 5 30 30 H 1.09000 * 109.47063 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47416 * 300.00317 * 1 2 3 32 32 H 1.09002 * 109.47364 * 60.00439 * 1 2 3 33 33 H 1.09003 * 109.47162 * 300.00259 * 4 2 1 34 34 H 1.08995 * 109.46768 * 60.00070 * 4 2 1 35 35 H 1.09003 * 109.46563 * 179.97438 * 5 4 2 36 36 H 1.09004 * 109.46960 * 60.00351 * 5 4 2 37 37 H 0.97001 * 119.99621 * 359.97438 * 10 8 6 38 38 H 1.09003 * 109.47232 * 299.99665 * 11 10 8 39 39 H 1.08999 * 109.47302 * 60.00424 * 11 10 8 40 40 H 1.08991 * 109.32901 * 288.97096 * 14 12 11 41 41 H 1.08999 * 109.32393 * 48.44665 * 14 12 11 42 42 H 1.08996 * 108.49307 * 301.53212 * 15 14 12 43 43 H 1.08999 * 108.39863 * 183.95785 * 15 14 12 44 44 H 1.09002 * 109.48988 * 155.02653 * 16 15 14 45 45 H 1.09001 * 109.51124 * 34.96764 * 16 15 14 46 46 H 1.09008 * 109.36376 * 331.70152 * 17 16 15 47 47 H 1.08998 * 109.26860 * 212.01757 * 17 16 15 48 48 H 1.08990 * 108.95050 * 198.75770 * 18 17 16 49 49 H 1.08999 * 108.94625 * 80.12206 * 18 17 16 50 50 H 0.96998 * 120.00997 * 180.02562 * 23 22 20 51 51 H 1.09004 * 109.47371 * 179.97438 * 28 6 5 52 52 H 1.09000 * 109.47365 * 60.00108 * 28 6 5 53 53 H 1.09000 * 109.47052 * 300.00519 * 29 28 6 54 54 H 1.08992 * 109.47816 * 180.02562 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5700 -0.7206 1.2497 6 6 4.0805 -1.4415 0.0005 7 1 3.7175 -2.4693 0.0003 8 6 5.5875 -1.4415 0.0011 9 8 6.1942 -0.9161 -0.9082 10 7 6.2610 -2.0253 1.0121 11 6 7.7259 -2.0257 1.0124 12 6 8.2354 -2.7467 2.2621 13 1 7.9461 -2.1835 3.1493 14 6 9.7792 -2.8551 2.2015 15 6 10.3116 -3.2970 3.5002 16 6 9.8516 -4.6873 3.9281 17 6 8.5142 -4.5810 4.6183 18 6 7.3762 -4.7605 3.5972 19 7 7.6583 -4.0708 2.3229 20 6 7.3606 -4.7117 1.1499 21 1 7.9208 -4.4866 0.2543 22 6 6.3389 -5.6504 1.1118 23 7 5.4744 -5.7229 2.1016 24 14 6.1907 -6.8111 -0.3444 25 1 6.9762 -8.0428 -0.0776 26 1 4.7640 -7.1686 -0.5493 27 1 6.7141 -6.1446 -1.5639 28 6 3.5705 -0.7204 -1.2487 29 6 2.0405 -0.7209 -1.2492 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6765 -0.2073 2.1393 34 1 1.6766 -1.7488 1.2494 35 1 3.9332 -1.2340 2.1400 36 1 3.9329 0.3072 1.2499 37 1 5.7757 -2.4452 1.7395 38 1 8.0893 -2.5397 0.1225 39 1 8.0896 -0.9982 1.0126 40 1 10.0604 -3.5747 1.4328 41 1 10.1996 -1.8810 1.9513 42 1 10.0036 -2.5809 4.2619 43 1 11.4002 -3.2946 3.4445 44 1 10.5817 -5.1169 4.6141 45 1 9.7579 -5.3262 3.0499 46 1 8.4269 -3.6013 5.0883 47 1 8.4406 -5.3558 5.3814 48 1 6.4549 -4.3599 4.0199 49 1 7.2408 -5.8241 3.4014 50 1 4.7606 -6.3791 2.0752 51 1 3.9346 -1.2337 -2.1388 52 1 3.9335 0.3074 -1.2486 53 1 1.6776 -1.7487 -1.2493 54 1 1.6772 -0.2075 -2.1393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969121972.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:41 Heat of formation + Delta-G solvation = -69.767909 kcal Electronic energy + Delta-G solvation = -29775.990661 eV Core-core repulsion = 26131.829804 eV Total energy + Delta-G solvation = -3644.160857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.15221 -39.82379 -38.73121 -35.98182 -35.21553 -33.85683 -32.98710 -32.45284 -31.62914 -28.89330 -27.80811 -26.86891 -25.20377 -23.94347 -23.53531 -22.67884 -21.40070 -20.83156 -20.78574 -20.50144 -18.46101 -17.63602 -17.24267 -16.83299 -16.34332 -16.11565 -15.84808 -15.44569 -15.21615 -15.15701 -15.09253 -14.79801 -14.62720 -14.27580 -14.08430 -13.66121 -13.45135 -13.37627 -13.18897 -13.08391 -13.04953 -12.88799 -12.81860 -12.70435 -12.38415 -12.32721 -12.01734 -11.99929 -11.86542 -11.56994 -11.53776 -11.40358 -11.32391 -11.24339 -11.20468 -11.01474 -10.90562 -10.50521 -10.34766 -9.74732 -8.54872 -7.79080 -5.22089 1.39442 1.44991 1.49022 1.80507 2.48733 2.55137 3.35408 3.60366 3.70224 3.74923 3.79944 4.04225 4.09677 4.16885 4.19862 4.26404 4.32109 4.43736 4.46199 4.50496 4.52876 4.58558 4.61461 4.66833 4.67519 4.81872 4.85961 4.94259 5.01038 5.02419 5.06679 5.08263 5.13828 5.14772 5.19002 5.25578 5.26640 5.27179 5.34365 5.38362 5.43038 5.43797 5.45549 5.55691 5.61889 5.67048 5.72049 5.77217 5.81424 5.91969 6.47781 6.81285 7.27467 7.44243 8.01366 8.39318 9.24196 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.012860 B = 0.004165 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.697307 B = 6721.663607 C = 7450.908085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.073 0.927 4 C -0.108 4.108 5 C -0.100 4.100 6 C -0.100 4.100 7 H 0.084 0.916 8 C 0.508 3.492 9 O -0.600 6.600 10 N -0.689 5.689 11 C 0.132 3.868 12 C 0.175 3.825 13 H 0.057 0.943 14 C -0.129 4.129 15 C -0.100 4.100 16 C -0.103 4.103 17 C -0.133 4.133 18 C 0.190 3.810 19 N -0.587 5.587 20 C -0.231 4.231 21 H 0.045 0.955 22 C -0.025 4.025 23 N -0.916 5.916 24 Si 0.928 3.072 25 H -0.291 1.291 26 H -0.296 1.296 27 H -0.289 1.289 28 C -0.091 4.091 29 C -0.109 4.109 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.408 0.592 38 H 0.036 0.964 39 H 0.063 0.937 40 H 0.040 0.960 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.041 0.959 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.003 0.997 49 H 0.039 0.961 50 H 0.246 0.754 51 H 0.047 0.953 52 H 0.062 0.938 53 H 0.059 0.941 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.833 10.306 3.300 11.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 H 0.091 0.909 4 C -0.145 4.145 5 C -0.138 4.138 6 C -0.121 4.121 7 H 0.102 0.898 8 C 0.295 3.705 9 O -0.483 6.483 10 N -0.337 5.337 11 C 0.007 3.993 12 C 0.067 3.933 13 H 0.075 0.925 14 C -0.170 4.170 15 C -0.137 4.137 16 C -0.141 4.141 17 C -0.172 4.172 18 C 0.066 3.934 19 N -0.310 5.310 20 C -0.362 4.362 21 H 0.063 0.937 22 C -0.221 4.221 23 N -0.563 5.563 24 Si 0.760 3.240 25 H -0.218 1.218 26 H -0.222 1.222 27 H -0.215 1.215 28 C -0.129 4.129 29 C -0.147 4.147 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.244 0.756 38 H 0.055 0.945 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.060 0.940 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.021 0.979 49 H 0.057 0.943 50 H 0.056 0.944 51 H 0.065 0.935 52 H 0.081 0.919 53 H 0.077 0.923 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.533 10.562 2.734 11.468 hybrid contribution -0.160 -1.586 -0.835 1.800 sum -3.693 8.976 1.899 9.890 Atomic orbital electron populations 1.21793 0.94028 1.01933 1.02280 1.21149 0.96281 0.99462 0.94002 0.90864 1.21573 0.93322 1.01059 0.98580 1.21439 0.97286 1.00111 0.94946 1.21292 0.89840 1.01882 0.99102 0.89810 1.21102 0.91129 0.77205 0.81066 1.90583 1.71550 1.48712 1.37412 1.45767 1.07393 1.55564 1.24966 1.21427 0.80319 0.98535 0.99006 1.20654 0.92402 0.85662 0.94583 0.92531 1.21308 0.96815 1.00675 0.98165 1.20278 0.99986 0.96454 0.97000 1.20906 0.96205 0.97503 0.99488 1.21946 0.96009 1.01150 0.98049 1.20778 0.92601 0.96107 0.83956 1.43772 1.72257 1.12858 1.02098 1.18944 1.10053 1.17870 0.89332 0.93711 1.25224 0.96103 1.02362 0.98424 1.70102 1.16097 1.36930 1.33150 0.85878 0.76247 0.80578 0.81313 1.21793 1.22227 1.21508 1.21255 0.96348 1.00103 0.95217 1.21602 0.93293 1.01019 0.98746 0.92929 0.91870 0.92037 0.90190 0.92260 0.91898 0.91411 0.75624 0.94511 0.91925 0.94108 0.91002 0.91947 0.92005 0.91817 0.94046 0.92152 0.92084 0.97872 0.94291 0.94438 0.93454 0.91922 0.92257 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.19 71.98 0.66 -1.62 16 2 C -0.09 -1.77 2.72 -10.79 -0.03 -1.80 16 3 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 4 C -0.11 -2.32 5.20 30.60 0.16 -2.16 16 5 C -0.10 -2.63 5.10 30.59 0.16 -2.47 16 6 C -0.10 -3.23 2.52 -11.54 -0.03 -3.26 16 7 H 0.08 2.93 8.14 -2.39 -0.02 2.92 16 8 C 0.51 20.15 7.15 87.66 0.63 20.77 16 9 O -0.60 -27.33 15.98 -3.05 -0.05 -27.38 16 10 N -0.69 -27.20 4.61 -463.06 -2.14 -29.34 16 11 C 0.13 5.12 4.52 86.38 0.39 5.52 16 12 C 0.17 6.39 2.19 45.99 0.10 6.49 16 13 H 0.06 1.96 8.07 -2.39 -0.02 1.94 16 14 C -0.13 -4.12 5.07 29.41 0.15 -3.97 16 15 C -0.10 -2.80 5.16 28.63 0.15 -2.66 16 16 C -0.10 -3.26 5.51 29.76 0.16 -3.09 16 17 C -0.13 -4.42 5.71 30.22 0.17 -4.24 16 18 C 0.19 8.17 4.66 86.49 0.40 8.57 16 19 N -0.59 -25.45 1.78 -674.23 -1.20 -26.65 16 20 C -0.23 -11.57 7.65 84.03 0.64 -10.93 16 21 H 0.05 2.40 6.72 -2.91 -0.02 2.38 16 22 C -0.02 -1.28 4.89 84.86 0.41 -0.87 16 23 N -0.92 -48.77 11.03 21.65 0.24 -48.53 16 24 Si 0.93 44.59 29.58 68.60 2.03 46.62 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 26 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 27 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 28 C -0.09 -2.66 4.49 30.59 0.14 -2.53 16 29 C -0.11 -2.46 5.21 30.59 0.16 -2.30 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.06 1.73 7.56 -2.39 -0.02 1.71 16 36 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.41 16.61 7.50 -92.71 -0.70 15.91 16 38 H 0.04 1.64 6.83 -2.39 -0.02 1.62 16 39 H 0.06 2.23 8.14 -2.39 -0.02 2.22 16 40 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.97 8.11 -2.39 -0.02 1.95 16 42 H 0.06 1.60 7.36 -2.39 -0.02 1.58 16 43 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.04 1.58 7.48 -2.39 -0.02 1.56 16 46 H 0.06 1.83 7.32 -2.38 -0.02 1.81 16 47 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.00 0.15 8.02 -2.39 -0.02 0.13 16 49 H 0.04 1.94 6.39 -2.39 -0.02 1.93 16 50 H 0.25 13.08 8.31 -92.71 -0.77 12.31 16 51 H 0.05 1.54 8.10 -2.38 -0.02 1.52 16 52 H 0.06 1.86 8.10 -2.39 -0.02 1.84 16 53 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 54 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -58.40 399.24 3.46 -54.94 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: 0.14 Total: 30.89 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 4.43 Total: -0.55 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -3.09 Total: -104.52 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.05 Total: -27.38 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -58.40 3.46 -54.94 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969121972.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.830 kcal (2) G-P(sol) polarization free energy of solvation -58.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds