Wall clock time and date at job start Tue Mar 31 2020 15:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.42963 * 2 1 4 4 C 1.54888 * 110.48626 * 122.54145 * 2 1 3 5 5 C 1.54893 * 102.74360 * 156.62265 * 4 2 1 6 6 C 1.54262 * 104.19880 * 322.05427 * 5 4 2 7 7 C 1.52996 * 110.03441 * 142.89667 * 6 5 4 8 8 C 1.50701 * 110.03423 * 264.28216 * 6 5 4 9 9 O 1.21281 * 119.99964 * 97.11684 * 8 6 5 10 10 N 1.34769 * 119.99842 * 277.11911 * 8 6 5 11 11 C 1.47429 * 125.65249 * 6.51937 * 10 8 6 12 12 C 1.55121 * 104.72623 * 155.81912 * 11 10 8 13 13 C 1.55160 * 101.48612 * 37.29395 * 12 11 10 14 14 H 1.09001 * 110.71503 * 82.70018 * 13 12 11 15 15 N 1.46503 * 110.87196 * 205.89576 * 13 12 11 16 16 C 1.46506 * 119.99524 * 53.61840 * 15 13 12 17 17 C 1.36935 * 120.00155 * 233.61234 * 15 13 12 18 18 H 1.08000 * 119.99606 * 20.88904 * 17 15 13 19 19 C 1.38807 * 119.99958 * 200.89417 * 17 15 13 20 20 N 1.31624 * 119.99929 * 12.65609 * 19 17 15 21 21 Si 1.86800 * 120.00140 * 192.66037 * 19 17 15 22 22 H 1.48500 * 109.47037 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47346 * 119.99781 * 21 19 17 24 24 H 1.48500 * 109.47148 * 239.99936 * 21 19 17 25 25 C 1.47023 * 125.64965 * 186.82866 * 10 8 6 26 26 C 1.53880 * 106.59543 * 23.61269 * 6 5 4 27 27 C 1.53003 * 110.02970 * 119.28323 * 26 6 5 28 28 C 1.52999 * 110.03127 * 240.70933 * 26 6 5 29 29 H 1.08997 * 109.47433 * 298.91263 * 1 2 3 30 30 H 1.09005 * 109.47048 * 58.91092 * 1 2 3 31 31 H 1.09002 * 109.46851 * 178.91294 * 1 2 3 32 32 H 1.08997 * 110.75730 * 38.30799 * 4 2 1 33 33 H 1.09000 * 110.91217 * 275.00568 * 4 2 1 34 34 H 1.09001 * 110.47927 * 203.37564 * 5 4 2 35 35 H 1.08995 * 110.48759 * 80.74149 * 5 4 2 36 36 H 1.09006 * 109.46797 * 61.45297 * 7 6 5 37 37 H 1.09002 * 109.47258 * 301.45904 * 7 6 5 38 38 H 1.09001 * 109.47478 * 181.45384 * 7 6 5 39 39 H 1.09005 * 110.36401 * 274.75314 * 11 10 8 40 40 H 1.09004 * 110.36345 * 37.07049 * 11 10 8 41 41 H 1.09001 * 111.19035 * 279.19525 * 12 11 10 42 42 H 1.09005 * 110.94100 * 155.29197 * 12 11 10 43 43 H 1.09000 * 109.47357 * 87.07037 * 16 15 13 44 44 H 1.09006 * 109.46332 * 207.06872 * 16 15 13 45 45 H 1.08992 * 109.46959 * 327.06539 * 16 15 13 46 46 H 0.97004 * 119.99360 * 180.02562 * 20 19 17 47 47 H 1.08995 * 109.88507 * 300.44018 * 25 10 8 48 48 H 1.09000 * 109.88192 * 61.44975 * 25 10 8 49 49 H 1.09005 * 109.47209 * 60.00086 * 27 26 6 50 50 H 1.08999 * 109.46965 * 179.97438 * 27 26 6 51 51 H 1.08996 * 109.47462 * 300.00242 * 27 26 6 52 52 H 1.09006 * 109.46735 * 70.13884 * 28 26 6 53 53 H 1.09003 * 109.47162 * 190.13253 * 28 26 6 54 54 H 1.08996 * 109.47609 * 310.13577 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0721 -0.7805 1.2231 5 6 3.4907 -1.1969 0.7614 6 6 3.3166 -1.5414 -0.7322 7 6 4.5465 -1.0883 -1.5214 8 6 3.1141 -3.0253 -0.8996 9 8 1.9932 -3.4762 -1.0057 10 7 4.1785 -3.8513 -0.9313 11 6 5.5775 -3.4601 -0.6799 12 6 6.2761 -4.7670 -0.2213 13 6 5.5831 -5.8211 -1.1246 14 1 6.0531 -5.8553 -2.1075 15 7 5.6059 -7.1438 -0.4951 16 6 5.0876 -7.3170 0.8643 17 6 6.1114 -8.2182 -1.1772 18 1 6.7843 -8.0626 -2.0075 19 6 5.7588 -9.5071 -0.8017 20 7 4.7598 -9.6992 0.0336 21 14 6.7021 -10.9691 -1.4815 22 1 7.7705 -10.4880 -2.3937 23 1 7.3123 -11.7289 -0.3610 24 1 5.7729 -11.8527 -2.2307 25 6 4.1377 -5.2906 -1.2285 26 6 2.0699 -0.7803 -1.2163 27 6 2.4506 0.1912 -2.3353 28 6 1.0139 -1.7683 -1.7160 29 1 -0.3634 0.4968 0.8995 30 1 -0.3633 0.5307 -0.8801 31 1 -0.3633 -1.0275 -0.0195 32 1 1.4581 -1.6583 1.4243 33 1 2.1250 -0.1382 2.1022 34 1 3.8316 -2.0704 1.3171 35 1 4.1898 -0.3696 0.8831 36 1 5.4277 -1.6148 -1.1547 37 1 4.6852 -0.0148 -1.3934 38 1 4.4029 -1.3126 -2.5784 39 1 6.0360 -3.0827 -1.5940 40 1 5.6255 -2.7082 0.1079 41 1 6.0830 -4.9681 0.8325 42 1 7.3472 -4.7263 -0.4192 43 1 4.0149 -7.5060 0.8229 44 1 5.5874 -8.1617 1.3387 45 1 5.2752 -6.4124 1.4426 46 1 4.5137 -10.6000 0.2963 47 1 3.5026 -5.8008 -0.5044 48 1 3.7533 -5.4503 -2.2359 49 1 2.8773 -0.3651 -3.1699 50 1 1.5615 0.7247 -2.6714 51 1 3.1842 0.9058 -1.9622 52 1 0.6012 -2.3178 -0.8699 53 1 0.2155 -1.2231 -2.2193 54 1 1.4726 -2.4679 -2.4147 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972484158.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:38 Heat of formation + Delta-G solvation = 7.827420 kcal Electronic energy + Delta-G solvation = -30155.462491 eV Core-core repulsion = 26514.666420 eV Total energy + Delta-G solvation = -3640.796071 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.42508 -39.97849 -38.39033 -36.74837 -34.42325 -33.30881 -33.02617 -31.17778 -29.80516 -28.66074 -28.20710 -28.02011 -26.05691 -24.77692 -24.58085 -23.63298 -21.96710 -20.91123 -20.39699 -18.98945 -18.95610 -17.60588 -17.40000 -16.97485 -16.45357 -16.25510 -15.69532 -15.37678 -15.09117 -14.88374 -14.80923 -14.48539 -14.42579 -14.31291 -14.25647 -14.07523 -13.70586 -13.40426 -13.25016 -13.18458 -12.82274 -12.71840 -12.54831 -12.44225 -12.39554 -12.28132 -12.16448 -12.07117 -11.96289 -11.89169 -11.70708 -11.60664 -11.59632 -11.40000 -11.29808 -11.16007 -10.97632 -10.63087 -9.89680 -9.45200 -8.85516 -7.87167 -5.33707 1.46486 1.47319 1.58230 1.68075 2.04929 2.50199 3.26944 3.38060 3.49449 3.59584 3.62314 3.83908 3.92237 4.14196 4.22068 4.25505 4.30935 4.33925 4.39533 4.43374 4.48478 4.49392 4.56444 4.64469 4.68354 4.77464 4.80901 4.81719 4.87973 4.93106 4.95794 5.01154 5.02125 5.02959 5.11469 5.16774 5.18038 5.20924 5.26804 5.27909 5.30146 5.33300 5.39647 5.41866 5.47718 5.51716 5.59652 5.60899 5.67919 5.78886 6.29257 6.69021 7.10266 7.27955 7.81709 8.26196 9.17993 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.025472 B = 0.003080 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.978616 B = 9089.875225 C = 9289.913827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 H 0.100 0.900 4 C -0.122 4.122 5 C -0.106 4.106 6 C -0.064 4.064 7 C -0.164 4.164 8 C 0.517 3.483 9 O -0.571 6.571 10 N -0.613 5.613 11 C 0.104 3.896 12 C -0.143 4.143 13 C 0.165 3.835 14 H 0.082 0.918 15 N -0.602 5.602 16 C 0.181 3.819 17 C -0.263 4.263 18 H 0.081 0.919 19 C -0.057 4.057 20 N -0.943 5.943 21 Si 0.974 3.026 22 H -0.260 1.260 23 H -0.291 1.291 24 H -0.297 1.297 25 C 0.100 3.900 26 C -0.049 4.049 27 C -0.135 4.135 28 C -0.107 4.107 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.040 0.960 32 H 0.037 0.963 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.053 0.947 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.065 0.935 42 H 0.102 0.898 43 H -0.019 1.019 44 H 0.036 0.964 45 H 0.027 0.973 46 H 0.247 0.753 47 H 0.027 0.973 48 H 0.036 0.964 49 H 0.049 0.951 50 H 0.057 0.943 51 H 0.083 0.917 52 H 0.053 0.947 53 H 0.029 0.971 54 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.121 26.140 -0.241 26.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 H 0.118 0.882 4 C -0.160 4.160 5 C -0.143 4.143 6 C -0.067 4.067 7 C -0.221 4.221 8 C 0.308 3.692 9 O -0.452 6.452 10 N -0.347 5.347 11 C -0.017 4.017 12 C -0.182 4.182 13 C 0.057 3.943 14 H 0.100 0.900 15 N -0.323 5.323 16 C 0.036 3.964 17 C -0.393 4.393 18 H 0.099 0.901 19 C -0.252 4.252 20 N -0.590 5.590 21 Si 0.802 3.198 22 H -0.184 1.184 23 H -0.218 1.218 24 H -0.225 1.225 25 C -0.026 4.026 26 C -0.050 4.050 27 C -0.192 4.192 28 C -0.163 4.163 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.130 0.870 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.072 0.928 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.083 0.917 42 H 0.120 0.880 43 H -0.001 1.001 44 H 0.054 0.946 45 H 0.046 0.954 46 H 0.057 0.943 47 H 0.045 0.955 48 H 0.055 0.945 49 H 0.068 0.932 50 H 0.076 0.924 51 H 0.101 0.899 52 H 0.072 0.928 53 H 0.047 0.953 54 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.434 25.779 -0.245 25.784 hybrid contribution -0.527 -2.130 -0.330 2.219 sum -0.093 23.649 -0.575 23.656 Atomic orbital electron populations 1.21878 0.95349 1.01240 1.01873 1.22022 0.95499 0.99294 0.92735 0.88223 1.22566 0.95510 0.99378 0.98525 1.22455 0.98555 1.01976 0.91348 1.21406 0.98579 0.87918 0.98846 1.22629 0.96065 1.03936 0.99438 1.21297 0.82563 0.90018 0.75298 1.90817 1.23850 1.78993 1.51499 1.48720 1.08589 1.08239 1.69146 1.22869 0.79681 0.97048 1.02121 1.23302 1.01055 0.93748 1.00128 1.21562 0.91281 0.84868 0.96636 0.89973 1.44142 1.71323 1.04325 1.12488 1.20465 0.94925 0.96246 0.84765 1.19719 1.20495 0.85464 1.13624 0.90128 1.25841 0.98114 1.00613 1.00610 1.70294 1.29231 1.20418 1.39023 0.85102 0.78028 0.79167 0.77520 1.18445 1.21755 1.22458 1.22390 1.00852 0.81297 0.98052 1.21152 0.92690 0.94697 0.96420 1.22012 1.01853 0.98330 0.96976 1.22158 0.97630 0.96063 1.00493 0.91915 0.92226 0.94116 0.94364 0.89302 0.92811 0.86998 0.89240 0.88596 0.92835 0.88415 0.87861 0.91652 0.87995 1.00121 0.94553 0.95436 0.94344 0.95453 0.94514 0.93219 0.92438 0.89871 0.92826 0.95251 0.95312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 8.16 71.98 0.59 -2.08 16 2 C -0.08 -1.33 2.89 -9.72 -0.03 -1.35 16 3 H 0.10 1.24 7.84 -2.39 -0.02 1.22 16 4 C -0.12 -2.30 6.33 31.89 0.20 -2.10 16 5 C -0.11 -1.89 5.24 31.67 0.17 -1.72 16 6 C -0.06 -1.37 0.62 -52.20 -0.03 -1.41 16 7 C -0.16 -2.46 6.43 71.98 0.46 -2.00 16 8 C 0.52 16.63 5.99 87.66 0.52 17.16 16 9 O -0.57 -23.38 11.52 -3.03 -0.03 -23.42 16 10 N -0.61 -19.52 3.28 -811.37 -2.66 -22.18 16 11 C 0.10 2.35 4.77 86.93 0.41 2.76 16 12 C -0.14 -4.09 6.63 32.06 0.21 -3.88 16 13 C 0.17 6.45 3.43 46.18 0.16 6.61 16 14 H 0.08 3.10 7.91 -2.39 -0.02 3.08 16 15 N -0.60 -29.91 2.94 -696.14 -2.05 -31.95 16 16 C 0.18 9.22 8.02 127.77 1.02 10.25 16 17 C -0.26 -14.25 9.64 84.03 0.81 -13.44 16 18 H 0.08 4.13 7.81 -2.91 -0.02 4.11 16 19 C -0.06 -3.22 5.07 84.86 0.43 -2.79 16 20 N -0.94 -57.04 10.61 21.65 0.23 -56.81 16 21 Si 0.97 45.06 29.57 68.60 2.03 47.09 16 22 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 24 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 25 C 0.10 4.10 6.51 86.73 0.56 4.66 16 26 C -0.05 -1.02 0.86 -51.46 -0.04 -1.07 16 27 C -0.13 -2.10 7.19 71.98 0.52 -1.59 16 28 C -0.11 -3.09 5.49 71.98 0.40 -2.70 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 0.99 8.00 -2.38 -0.02 0.97 16 31 H 0.04 0.94 6.09 -2.39 -0.01 0.93 16 32 H 0.04 0.96 8.06 -2.39 -0.02 0.94 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.05 1.14 7.46 -2.39 -0.02 1.12 16 35 H 0.11 1.25 7.85 -2.39 -0.02 1.23 16 36 H 0.09 1.17 3.48 -2.38 -0.01 1.17 16 37 H 0.10 0.92 6.65 -2.39 -0.02 0.90 16 38 H 0.05 0.91 6.82 -2.39 -0.02 0.90 16 39 H 0.10 1.72 6.98 -2.38 -0.02 1.71 16 40 H 0.10 1.76 5.97 -2.38 -0.01 1.75 16 41 H 0.06 2.06 6.02 -2.39 -0.01 2.04 16 42 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 43 H -0.02 -1.13 7.48 -2.39 -0.02 -1.15 16 44 H 0.04 2.00 6.62 -2.38 -0.02 1.99 16 45 H 0.03 1.21 6.00 -2.39 -0.01 1.19 16 46 H 0.25 14.56 8.31 -92.71 -0.77 13.78 16 47 H 0.03 1.34 6.94 -2.39 -0.02 1.33 16 48 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.05 0.86 6.78 -2.38 -0.02 0.84 16 50 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.08 0.89 6.68 -2.39 -0.02 0.87 16 52 H 0.05 1.84 5.18 -2.42 -0.01 1.83 16 53 H 0.03 0.76 7.54 -2.39 -0.02 0.74 16 54 H 0.03 0.99 6.14 -2.55 -0.02 0.97 16 Total: -1.00 -71.68 377.83 4.75 -66.92 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.87 Total: 15.03 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 6.37 Total: 5.32 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -4.48 Total: -110.94 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.03 Total: -23.42 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -71.68 4.75 -66.92 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972484158.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.751 kcal (2) G-P(sol) polarization free energy of solvation -71.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds